Wall clock time and date at job start Tue Mar 9 2021 13:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99699 * 2 1 4 4 O 1.20834 * 120.00114 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00134 * 179.97438 * 3 2 1 6 6 N 1.46501 * 108.88684 * 323.63769 * 5 3 2 7 7 C 1.34780 * 119.99913 * 61.35924 * 6 5 3 8 8 O 1.21692 * 120.00216 * 356.25170 * 7 6 5 9 9 C 1.46677 * 119.99521 * 176.25802 * 7 6 5 10 10 C 1.37876 * 126.23719 * 354.66718 * 9 7 6 11 11 C 1.39831 * 107.08448 * 179.85078 * 10 9 7 12 12 C 1.50702 * 126.06787 * 180.13935 * 11 10 9 13 13 O 1.42907 * 109.46848 * 65.30273 * 12 11 10 14 14 Si 1.86294 * 109.47180 * 185.30346 * 12 11 10 15 15 H 1.48507 * 109.46740 * 180.02562 * 14 12 11 16 16 H 1.48497 * 109.47320 * 299.99836 * 14 12 11 17 17 H 1.48501 * 109.47142 * 60.00424 * 14 12 11 18 18 C 1.35452 * 107.86799 * 0.41975 * 11 10 9 19 19 N 1.35539 * 108.86979 * 359.73905 * 18 11 10 20 20 C 1.46497 * 125.67647 * 179.97438 * 19 18 11 21 21 C 1.52595 * 108.83381 * 82.22880 * 5 3 2 22 22 C 1.54354 * 109.20649 * 198.44008 * 21 5 3 23 23 Si 1.85201 * 107.06227 * 303.26642 * 22 21 5 24 24 C 1.87772 * 111.37935 * 278.83871 * 23 22 21 25 25 C 1.56402 * 98.96520 * 221.41493 * 24 23 22 26 26 C 1.53767 * 109.78307 * 39.37083 * 25 24 23 27 27 C 1.55692 * 111.40110 * 312.18981 * 26 25 24 28 28 C 1.85203 * 110.01107 * 42.83503 * 23 22 21 29 29 C 1.52600 * 108.91121 * 204.99967 * 5 3 2 30 30 H 1.08994 * 109.47358 * 300.00207 * 1 2 3 31 31 H 1.09007 * 109.47070 * 60.00309 * 1 2 3 32 32 H 1.09003 * 109.46851 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00067 * 241.36573 * 6 5 3 34 34 H 1.08001 * 126.45519 * 359.97012 * 10 9 7 35 35 H 1.08999 * 109.47199 * 305.30898 * 12 11 10 36 36 H 0.96702 * 113.99629 * 179.97438 * 13 12 11 37 37 H 1.07994 * 125.56762 * 179.70517 * 18 11 10 38 38 H 1.09000 * 109.47422 * 264.50459 * 20 19 18 39 39 H 1.09003 * 109.47428 * 24.50807 * 20 19 18 40 40 H 1.09004 * 109.47111 * 144.49985 * 20 19 18 41 41 H 1.08996 * 109.51389 * 78.51683 * 21 5 3 42 42 H 1.08997 * 109.51281 * 318.35727 * 21 5 3 43 43 H 1.09001 * 109.93243 * 183.88189 * 22 21 5 44 44 H 1.08993 * 109.93930 * 62.65831 * 22 21 5 45 45 H 1.09005 * 111.49598 * 338.85683 * 24 23 22 46 46 H 1.09006 * 111.49222 * 103.97634 * 24 23 22 47 47 H 1.09002 * 109.42089 * 279.27245 * 25 24 23 48 48 H 1.08999 * 109.41825 * 159.46843 * 25 24 23 49 49 H 1.08993 * 109.10699 * 191.67532 * 26 25 24 50 50 H 1.09009 * 109.10511 * 72.69693 * 26 25 24 51 51 H 1.09002 * 111.14673 * 270.09161 * 27 26 25 52 52 H 1.09005 * 111.14942 * 145.87989 * 27 26 25 53 53 H 1.08999 * 109.93757 * 76.54893 * 28 23 22 54 54 H 1.08994 * 109.93630 * 197.69759 * 28 23 22 55 55 H 1.09001 * 109.51747 * 41.68742 * 29 5 3 56 56 H 1.09002 * 109.51289 * 281.52649 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.0980 0.1854 0.8228 7 6 3.8538 -1.0959 0.4835 8 8 3.1354 -1.3476 -0.4660 9 6 4.4538 -2.1870 1.2587 10 6 5.3627 -2.0524 2.2867 11 6 5.6630 -3.3404 2.7407 12 6 6.6110 -3.6883 3.8594 13 8 6.0971 -3.1834 5.0936 14 14 6.7873 -5.5395 3.9709 15 1 7.7211 -5.8822 5.0737 16 1 5.4597 -6.1479 4.2401 17 1 7.3215 -6.0640 2.6884 18 6 4.9554 -4.2203 1.9925 19 7 4.2166 -3.5322 1.0883 20 6 3.3160 -4.1219 0.0947 21 6 4.0690 1.1056 -1.4302 22 6 5.5639 0.7219 -1.4010 23 14 6.4475 2.0502 -0.4604 24 6 6.7939 3.5428 -1.5458 25 6 8.2469 3.8628 -1.0636 26 6 9.0231 2.5535 -0.8453 27 6 8.1927 1.5328 -0.0131 28 6 5.4711 2.5198 1.0416 29 6 3.9914 2.6077 0.6106 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 4.6258 0.3860 1.6116 34 1 5.7652 -1.1266 2.6703 35 1 7.5855 -3.2417 3.6619 36 1 6.6572 -3.3715 5.8591 37 1 4.9769 -5.2948 2.0987 38 1 3.8419 -4.2291 -0.8541 39 1 2.9857 -5.1017 0.4398 40 1 2.4502 -3.4737 -0.0410 41 1 3.9439 2.0422 -1.9734 42 1 3.5006 0.3181 -1.9249 43 1 5.9528 0.6650 -2.4177 44 1 5.6918 -0.2370 -0.8989 45 1 6.7727 3.2809 -2.6037 46 1 6.1105 4.3632 -1.3265 47 1 8.2038 4.4190 -0.1271 48 1 8.7549 4.4638 -1.8178 49 1 9.9512 2.7727 -0.3176 50 1 9.2610 2.1140 -1.8141 51 1 8.3771 1.6533 1.0544 52 1 8.3933 0.5098 -0.3317 53 1 5.5886 1.7597 1.8140 54 1 5.8081 3.4860 1.4169 55 1 3.3710 2.8245 1.4802 56 1 3.8737 3.4003 -0.1283 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339704_10803934.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:23:02 Heat of formation + Delta-G solvation = -121.510107 kcal Electronic energy + Delta-G solvation = -38070.344907 eV Core-core repulsion = 33490.585007 eV Total energy + Delta-G solvation = -4579.759900 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 394.193 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.70098 -42.04435 -40.23712 -38.23252 -37.57221 -37.17286 -36.09336 -34.25011 -33.35413 -32.32638 -30.82338 -29.62824 -29.44706 -28.29518 -27.66544 -25.60461 -24.80168 -24.05994 -23.71884 -23.02251 -21.37384 -20.96413 -20.58117 -20.24337 -18.99084 -18.68392 -18.23233 -17.99404 -17.50908 -17.05583 -16.58052 -16.53371 -15.94663 -15.90202 -15.67533 -15.51952 -15.26909 -14.95868 -14.87867 -14.79755 -14.53104 -14.42886 -14.28382 -14.17878 -14.03242 -13.59472 -13.55702 -13.35736 -13.18973 -13.17233 -13.08382 -13.01513 -12.89361 -12.44482 -12.38349 -12.29034 -12.25765 -12.05957 -12.05588 -11.93743 -11.81156 -11.78075 -11.60351 -11.29551 -10.93294 -10.44946 -10.27729 -10.18666 -10.15327 -10.10968 -9.61664 -9.21518 0.47965 0.94307 1.30177 1.48746 1.54469 1.60771 1.65023 1.70602 1.81562 1.88671 1.96325 2.01971 2.28818 2.41692 2.68012 3.31809 3.59613 3.69739 3.71651 3.82648 3.96446 4.04583 4.16156 4.16860 4.19197 4.20829 4.21263 4.21686 4.32750 4.38719 4.39984 4.46708 4.47420 4.49876 4.59005 4.71947 4.72245 4.72517 4.74493 4.80187 4.86458 5.01176 5.06526 5.07604 5.16783 5.19390 5.22962 5.24749 5.27581 5.32920 5.39421 5.43780 5.44909 5.60777 5.61819 5.71396 5.95666 6.17328 6.46067 6.61296 6.99576 7.20048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.329 6.329 3 C 0.449 3.551 4 O -0.534 6.534 5 C 0.198 3.802 6 N -0.703 5.703 7 C 0.589 3.411 8 O -0.530 6.530 9 C -0.070 4.070 10 C -0.113 4.113 11 C -0.179 4.179 12 C -0.042 4.042 13 O -0.565 6.565 14 Si 0.970 3.030 15 H -0.258 1.258 16 H -0.272 1.272 17 H -0.259 1.259 18 C 0.014 3.986 19 N -0.411 5.411 20 C 0.068 3.932 21 C -0.117 4.117 22 C -0.408 4.408 23 Si 1.048 2.952 24 C -0.420 4.420 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.411 4.411 28 C -0.410 4.410 29 C -0.103 4.103 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.419 0.581 34 H 0.166 0.834 35 H 0.092 0.908 36 H 0.394 0.606 37 H 0.182 0.818 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.055 0.945 51 H 0.089 0.911 52 H 0.078 0.922 53 H 0.096 0.904 54 H 0.109 0.891 55 H 0.077 0.923 56 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.954 -1.801 2.543 5.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.243 6.243 3 C 0.292 3.708 4 O -0.423 6.423 5 C 0.110 3.890 6 N -0.362 5.362 7 C 0.378 3.622 8 O -0.407 6.407 9 C -0.183 4.183 10 C -0.139 4.139 11 C -0.185 4.185 12 C -0.154 4.154 13 O -0.373 6.373 14 Si 0.795 3.205 15 H -0.182 1.182 16 H -0.196 1.196 17 H -0.183 1.183 18 C -0.123 4.123 19 N -0.083 5.083 20 C -0.073 4.073 21 C -0.155 4.155 22 C -0.492 4.492 23 Si 1.239 2.761 24 C -0.505 4.505 25 C -0.164 4.164 26 C -0.162 4.162 27 C -0.497 4.497 28 C -0.496 4.496 29 C -0.141 4.141 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.261 0.739 34 H 0.184 0.816 35 H 0.110 0.890 36 H 0.244 0.756 37 H 0.199 0.801 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.102 0.898 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.107 0.893 52 H 0.096 0.904 53 H 0.115 0.885 54 H 0.128 0.872 55 H 0.096 0.904 56 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.503 -2.577 1.225 4.518 hybrid contribution -0.006 0.245 0.322 0.404 sum 3.496 -2.332 1.547 4.479 Atomic orbital electron populations 1.23431 0.76809 1.04723 1.02030 1.86931 1.23148 1.31881 1.82370 1.24828 0.93104 0.81577 0.71297 1.90665 1.67566 1.37255 1.46824 1.20388 0.83898 0.89991 0.94709 1.45802 1.56260 1.03456 1.30652 1.16990 0.79646 0.82342 0.83229 1.90815 1.36788 1.83776 1.29322 1.20078 1.08534 0.84199 1.05478 1.21473 0.98254 0.98791 0.95396 1.18952 1.05078 0.93578 1.00942 1.23984 0.97384 1.10220 0.83780 1.86478 1.52522 1.81454 1.16895 0.85448 0.79578 0.74753 0.80730 1.18150 1.19647 1.18280 1.22113 0.97325 0.98642 0.94202 1.43922 1.32766 1.04924 1.26692 1.22336 0.93675 1.00319 0.90922 1.21697 0.98051 1.03526 0.92216 1.26418 0.99775 1.13146 1.09868 0.78890 0.65621 0.65274 0.66345 1.26838 0.99591 1.15759 1.08349 1.22070 0.95218 0.97567 1.01505 1.21892 0.99337 0.95022 0.99958 1.26562 1.18140 1.01555 1.03475 1.26338 1.00136 1.08422 1.14685 1.21574 0.98048 0.92216 1.02273 0.92269 0.92272 0.86565 0.73948 0.81643 0.89010 0.75621 0.80098 0.90010 0.87623 0.89461 0.89060 0.91444 0.89837 0.90883 0.90769 0.89757 0.90932 0.92406 0.92050 0.92590 0.89255 0.90361 0.88539 0.87214 0.90442 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.56 113.37 1.20 1.32 16 2 O -0.33 -3.17 6.63 -43.63 -0.29 -3.45 16 3 C 0.45 3.98 6.46 71.24 0.46 4.44 16 4 O -0.53 -6.98 15.88 21.94 0.35 -6.63 16 5 C 0.20 0.38 0.62 2.59 0.00 0.38 16 6 N -0.70 -0.04 3.46 -431.47 -1.49 -1.53 16 7 C 0.59 2.81 5.38 86.45 0.46 3.28 16 8 O -0.53 -5.00 10.12 19.31 0.20 -4.81 16 9 C -0.07 -0.27 6.89 40.35 0.28 0.00 16 10 C -0.11 -0.13 10.28 22.57 0.23 0.10 16 11 C -0.18 -0.28 5.46 -20.12 -0.11 -0.39 16 12 C -0.04 0.11 3.01 71.24 0.21 0.32 16 13 O -0.57 0.73 12.86 -148.98 -1.92 -1.18 16 14 Si 0.97 -2.70 25.88 68.60 1.78 -0.93 16 15 H -0.26 0.66 7.11 99.48 0.71 1.37 16 16 H -0.27 -0.18 7.11 99.48 0.71 0.52 16 17 H -0.26 0.42 7.11 99.48 0.71 1.12 16 18 C 0.01 0.02 9.92 83.48 0.83 0.85 16 19 N -0.41 -1.29 3.16 -534.31 -1.69 -2.98 16 20 C 0.07 -0.02 10.37 127.77 1.33 1.31 16 21 C -0.12 -0.22 4.16 30.92 0.13 -0.09 16 22 C -0.41 0.67 4.68 72.44 0.34 1.01 16 23 Si 1.05 -6.77 10.16 68.60 0.70 -6.08 16 24 C -0.42 1.49 5.95 73.17 0.44 1.93 16 25 C -0.13 0.32 5.97 32.04 0.19 0.51 16 26 C -0.12 0.29 6.09 31.78 0.19 0.49 16 27 C -0.41 1.99 5.84 72.91 0.43 2.41 16 28 C -0.41 3.14 4.70 72.45 0.34 3.48 16 29 C -0.10 0.25 4.26 30.93 0.13 0.38 16 30 H 0.06 0.29 8.13 -2.39 -0.02 0.27 16 31 H 0.06 0.32 8.13 -2.38 -0.02 0.30 16 32 H 0.12 0.09 8.14 -2.39 -0.02 0.08 16 33 H 0.42 -2.08 5.16 -92.71 -0.48 -2.56 16 34 H 0.17 -0.71 7.48 -2.91 -0.02 -0.74 16 35 H 0.09 -0.61 7.96 -2.39 -0.02 -0.62 16 36 H 0.39 -3.95 8.74 -74.06 -0.65 -4.60 16 37 H 0.18 -0.51 6.21 -2.91 -0.02 -0.53 16 38 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.11 -0.56 8.12 -2.39 -0.02 -0.58 16 40 H 0.09 0.25 6.76 -2.38 -0.02 0.24 16 41 H 0.09 -0.05 7.76 -2.39 -0.02 -0.07 16 42 H 0.07 0.49 6.55 -2.39 -0.02 0.48 16 43 H 0.08 -0.13 7.97 -2.39 -0.02 -0.15 16 44 H 0.07 0.01 6.12 -2.39 -0.01 0.00 16 45 H 0.07 -0.18 8.04 -2.38 -0.02 -0.20 16 46 H 0.08 -0.37 8.04 -2.38 -0.02 -0.39 16 47 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 49 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 50 H 0.06 -0.08 8.14 -2.38 -0.02 -0.10 16 51 H 0.09 -0.59 8.03 -2.39 -0.02 -0.61 16 52 H 0.08 -0.32 8.03 -2.38 -0.02 -0.34 16 53 H 0.10 -1.02 5.98 -2.39 -0.01 -1.04 16 54 H 0.11 -1.07 7.97 -2.39 -0.02 -1.09 16 55 H 0.08 -0.06 7.85 -2.39 -0.02 -0.07 16 56 H 0.10 -0.32 7.76 -2.39 -0.02 -0.34 16 Total: 0.00 -21.42 425.73 5.24 -16.18 By element: Atomic # 1 Polarization: -10.85 SS G_CDS: 0.53 Total: -10.32 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 7.08 Total: 21.73 kcal Atomic # 7 Polarization: -1.33 SS G_CDS: -3.18 Total: -4.51 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -1.66 Total: -16.08 kcal Atomic # 14 Polarization: -9.48 SS G_CDS: 2.47 Total: -7.01 kcal Total: -21.42 5.24 -16.18 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339704_10803934.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.328 kcal (2) G-P(sol) polarization free energy of solvation -21.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds