Wall clock time and date at job start Tue Mar 9 2021 18:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86303 * 109.46797 * 2 1 4 4 C 1.50698 * 109.47474 * 239.99833 * 2 1 3 5 5 C 1.36449 * 120.29136 * 240.00037 * 4 2 1 6 6 C 1.40098 * 119.25225 * 180.23178 * 5 4 2 7 7 C 1.40849 * 132.86618 * 180.37847 * 6 5 4 8 8 C 1.46575 * 126.57783 * 359.35286 * 7 6 5 9 9 O 1.21719 * 119.99451 * 0.25298 * 8 7 6 10 10 N 1.34772 * 119.99814 * 180.24840 * 8 7 6 11 11 C 1.46500 * 119.99487 * 175.07306 * 10 8 7 12 12 C 1.52995 * 112.85437 * 65.39346 * 11 10 8 13 13 O 1.42897 * 109.47369 * 55.28601 * 12 11 10 14 14 C 1.53782 * 113.61064 * 196.58940 * 11 10 8 15 15 C 1.54051 * 86.98961 * 89.15845 * 14 11 10 16 16 H 1.08997 * 113.69798 * 139.98632 * 15 14 11 17 17 O 1.42902 * 113.61349 * 270.88706 * 15 14 11 18 18 C 1.53783 * 87.07560 * 25.43125 * 15 14 11 19 19 C 1.40549 * 106.84563 * 179.58452 * 7 6 5 20 20 N 1.30743 * 108.74178 * 359.76735 * 19 7 6 21 21 N 1.36581 * 120.22986 * 359.50357 * 6 5 4 22 22 C 1.36243 * 120.07780 * 0.50343 * 21 6 5 23 23 C 1.35193 * 120.70800 * 359.72739 * 22 21 6 24 24 H 0.96708 * 113.99946 * 60.00881 * 1 2 3 25 25 H 1.08998 * 109.46839 * 119.99212 * 2 1 3 26 26 H 1.48508 * 109.99684 * 298.67467 * 3 2 1 27 27 H 1.48496 * 110.00284 * 59.99548 * 3 2 1 28 28 H 1.07996 * 120.37729 * 359.95460 * 5 4 2 29 29 H 0.96993 * 120.00175 * 355.06877 * 10 8 7 30 30 H 1.09000 * 109.47355 * 175.28814 * 12 11 10 31 31 H 1.09000 * 109.46729 * 295.28302 * 12 11 10 32 32 H 0.96694 * 114.00202 * 180.02562 * 13 12 11 33 33 H 1.09005 * 113.61312 * 203.66228 * 14 11 10 34 34 H 1.08998 * 113.61541 * 334.56452 * 14 11 10 35 35 H 0.96699 * 113.99436 * 277.48517 * 17 15 14 36 36 H 1.08995 * 113.61516 * 220.02713 * 18 15 14 37 37 H 1.08997 * 113.69098 * 89.12850 * 18 15 14 38 38 H 1.07995 * 125.63148 * 179.73547 * 19 7 6 39 39 H 1.08005 * 119.64812 * 179.72003 * 22 21 6 40 40 H 1.07998 * 119.84189 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7162 -1.8203 -1.1120 6 6 3.1753 -2.4609 -2.2704 7 6 3.9748 -3.6010 -2.4819 8 6 4.5755 -4.4504 -1.4494 9 8 4.3964 -4.1965 -0.2726 10 7 5.3258 -5.5126 -1.8032 11 6 6.0144 -6.2977 -0.7758 12 6 5.0493 -7.0241 0.1632 13 8 4.1584 -7.8360 -0.6043 14 6 7.1278 -7.2001 -1.3333 15 6 8.0819 -6.0068 -1.1365 16 1 9.0646 -6.2892 -0.7590 17 8 8.1511 -5.1367 -2.2680 18 6 7.1185 -5.5183 -0.0419 19 6 4.0907 -3.7647 -3.8730 20 7 3.4178 -2.8131 -4.4655 21 7 2.8309 -1.9832 -3.5027 22 6 2.0468 -0.8742 -3.6105 23 6 1.5962 -0.2373 -2.5064 24 1 -0.3933 0.4416 -0.7652 25 1 1.7923 -0.5137 0.8901 26 1 1.5878 2.4585 -1.2244 27 1 1.5613 2.4680 1.2084 28 1 2.9843 -2.1981 -0.1365 29 1 5.4099 -5.7572 -2.7380 30 1 5.6152 -7.6542 0.8494 31 1 4.4755 -6.2921 0.7316 32 1 3.5167 -8.3265 -0.0728 33 1 7.3586 -8.0534 -0.6955 34 1 6.9831 -7.4777 -2.3774 35 1 8.7555 -5.4386 -2.9599 36 1 6.9662 -4.4391 -0.0441 37 1 7.3458 -5.9117 0.9489 38 1 4.6446 -4.5471 -4.3704 39 1 1.7824 -0.4999 -4.5885 40 1 0.9751 0.6403 -2.6081 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18341542_11618758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 18:32:43 Heat of formation + Delta-G solvation = -17.504722 kcal Electronic energy + Delta-G solvation = -27447.690431 eV Core-core repulsion = 23425.608070 eV Total energy + Delta-G solvation = -4022.082360 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.21630 -41.49853 -39.53168 -38.94540 -37.43305 -37.27101 -35.80937 -34.19263 -33.60056 -32.02843 -30.25572 -28.49742 -27.19705 -26.91761 -25.06800 -24.06077 -23.12398 -22.82124 -21.22377 -20.15837 -19.05526 -18.62498 -18.24876 -18.10605 -17.84502 -17.46006 -16.87815 -16.67359 -16.49659 -16.33494 -15.85367 -15.52693 -15.47332 -15.36042 -14.88619 -14.69850 -14.52541 -14.18768 -13.81042 -13.64757 -13.46573 -13.35336 -13.20268 -13.19361 -12.55736 -12.41053 -12.12236 -12.04820 -11.85929 -11.49912 -11.33147 -11.00423 -10.93165 -10.85439 -10.37162 -10.30242 -9.74609 -8.67161 -5.03139 -0.48530 -0.09087 1.07449 1.12621 1.21428 1.50474 1.83243 2.12694 2.32128 2.73903 3.01511 3.12062 3.13172 3.19887 3.33127 3.48734 3.50708 3.66021 3.69615 3.82990 3.91728 4.08077 4.15792 4.21705 4.31529 4.39192 4.46051 4.55804 4.60754 4.61081 4.72965 4.78695 4.84561 4.90810 5.08228 5.10086 5.13871 5.23994 5.34565 5.71510 5.80479 6.24460 6.40184 6.65529 6.75014 6.82157 7.57859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.522 6.522 2 C -0.075 4.075 3 Si 0.696 3.304 4 C -0.069 4.069 5 C -0.088 4.088 6 C 0.167 3.833 7 C -0.308 4.308 8 C 0.609 3.391 9 O -0.553 6.553 10 N -0.688 5.688 11 C 0.169 3.831 12 C 0.072 3.928 13 O -0.568 6.568 14 C -0.165 4.165 15 C 0.079 3.921 16 H 0.073 0.927 17 O -0.545 6.545 18 C -0.131 4.131 19 C 0.122 3.878 20 N -0.315 5.315 21 N -0.267 5.267 22 C 0.123 3.877 23 C -0.163 4.163 24 H 0.375 0.625 25 H 0.126 0.874 26 H -0.253 1.253 27 H -0.248 1.248 28 H 0.164 0.836 29 H 0.400 0.600 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.378 0.622 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.380 0.620 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.198 0.802 39 H 0.176 0.824 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.115 -0.369 -0.683 3.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.183 4.183 3 Si 0.594 3.406 4 C -0.075 4.075 5 C -0.107 4.107 6 C 0.046 3.954 7 C -0.322 4.322 8 C 0.398 3.602 9 O -0.433 6.433 10 N -0.338 5.338 11 C 0.081 3.919 12 C -0.007 4.007 13 O -0.373 6.373 14 C -0.203 4.203 15 C 0.020 3.980 16 H 0.091 0.909 17 O -0.350 6.350 18 C -0.169 4.169 19 C -0.059 4.059 20 N -0.135 5.135 21 N -0.032 5.032 22 C -0.003 4.003 23 C -0.185 4.185 24 H 0.223 0.777 25 H 0.144 0.856 26 H -0.177 1.177 27 H -0.172 1.172 28 H 0.182 0.818 29 H 0.235 0.765 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.225 0.775 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.227 0.773 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.214 0.786 39 H 0.193 0.807 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.503 1.340 -0.683 2.920 hybrid contribution -0.676 -1.329 -0.274 1.516 sum 1.827 0.012 -0.957 2.062 Atomic orbital electron populations 1.86703 1.16920 1.80044 1.49135 1.25066 0.84267 1.11310 0.97706 0.94396 0.91701 0.73295 0.81225 1.20383 0.96446 0.95144 0.95486 1.20684 0.97823 0.94065 0.98144 1.19283 0.95711 0.94223 0.86163 1.19633 1.15783 1.03209 0.93616 1.16705 0.77032 0.79221 0.87215 1.90733 1.61720 1.72344 1.18463 1.45014 1.49982 1.29335 1.09482 1.21064 0.89982 0.91431 0.89377 1.22513 0.92067 0.93145 0.92929 1.86448 1.49562 1.63549 1.37765 1.23997 0.95568 0.97699 1.03026 1.22758 0.97210 0.90073 0.87985 0.90921 1.86526 1.68600 1.49443 1.30398 1.23366 0.93508 1.02766 0.97279 1.24058 0.94084 0.95619 0.92092 1.77633 1.18649 1.06497 1.10725 1.46071 1.32142 1.19054 1.05889 1.21496 0.91966 0.85175 1.01679 1.20677 1.04452 1.02631 0.90730 0.77726 0.85650 1.17686 1.17166 0.81811 0.76491 0.93003 0.91675 0.77492 0.87897 0.90059 0.77253 0.89290 0.87759 0.78585 0.80666 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.19 12.88 -35.23 -0.45 -0.65 16 2 C -0.07 0.07 2.84 36.00 0.10 0.17 16 3 Si 0.70 -1.27 31.97 -169.99 -5.43 -6.71 16 4 C -0.07 0.00 4.53 -104.55 -0.47 -0.47 16 5 C -0.09 -0.18 9.35 -39.53 -0.37 -0.55 16 6 C 0.17 0.60 6.76 -84.07 -0.57 0.04 16 7 C -0.31 -1.14 6.17 -104.68 -0.65 -1.78 16 8 C 0.61 2.56 7.28 -12.90 -0.09 2.47 16 9 O -0.55 -3.52 13.69 5.17 0.07 -3.45 16 10 N -0.69 -1.22 4.52 -48.17 -0.22 -1.44 16 11 C 0.17 0.16 0.74 -131.01 -0.10 0.06 16 12 C 0.07 0.09 6.24 37.15 0.23 0.32 16 13 O -0.57 -0.98 13.54 -35.23 -0.48 -1.45 16 14 C -0.16 0.21 7.22 -25.78 -0.19 0.03 16 15 C 0.08 -0.08 5.28 -25.78 -0.14 -0.22 16 16 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 17 O -0.54 0.21 13.09 -35.23 -0.46 -0.25 16 18 C -0.13 -0.08 6.86 -25.91 -0.18 -0.26 16 19 C 0.12 0.26 11.44 -17.14 -0.20 0.06 16 20 N -0.31 -1.14 12.57 30.75 0.39 -0.75 16 21 N -0.27 -0.77 3.86 -10.54 -0.04 -0.81 16 22 C 0.12 -0.03 11.17 -16.68 -0.19 -0.21 16 23 C -0.16 0.23 8.38 -39.95 -0.33 -0.10 16 24 H 0.37 -1.21 8.08 45.56 0.37 -0.84 16 25 H 0.13 -0.16 7.71 -51.93 -0.40 -0.56 16 26 H -0.25 0.19 7.05 56.52 0.40 0.59 16 27 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 28 H 0.16 0.38 7.01 -52.49 -0.37 0.01 16 29 H 0.40 0.03 7.59 -40.82 -0.31 -0.28 16 30 H 0.05 -0.04 8.08 -51.93 -0.42 -0.46 16 31 H 0.07 0.21 6.80 -51.93 -0.35 -0.15 16 32 H 0.38 -0.72 9.12 45.56 0.42 -0.30 16 33 H 0.10 -0.24 8.06 -51.93 -0.42 -0.66 16 34 H 0.08 -0.12 8.09 -51.93 -0.42 -0.54 16 35 H 0.38 -1.67 9.12 45.56 0.42 -1.26 16 36 H 0.09 0.29 7.54 -51.93 -0.39 -0.10 16 37 H 0.10 -0.12 8.10 -51.93 -0.42 -0.54 16 38 H 0.20 -0.33 7.47 -52.49 -0.39 -0.72 16 39 H 0.18 -0.52 8.06 -52.48 -0.42 -0.94 16 40 H 0.16 -0.66 7.26 -52.49 -0.38 -1.04 16 LS Contribution 340.77 15.07 5.14 5.14 Total: 0.00 -11.37 340.77 -7.75 -19.12 By element: Atomic # 1 Polarization: -5.18 SS G_CDS: -3.12 Total: -8.30 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -3.13 Total: -0.45 kcal Atomic # 7 Polarization: -3.12 SS G_CDS: 0.13 Total: -3.00 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -1.32 Total: -5.80 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: -5.43 Total: -6.71 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -11.37 -7.75 -19.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_11618758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.613 kcal (2) G-P(sol) polarization free energy of solvation -11.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds