Wall clock time and date at job start Tue Mar 9 2021 12:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86294 * 109.47316 * 2 1 4 4 C 1.50704 * 109.46786 * 239.99867 * 2 1 3 5 5 C 1.38249 * 119.96661 * 120.02554 * 4 2 1 6 6 C 1.38296 * 120.10926 * 179.97438 * 5 4 2 7 7 C 1.38127 * 120.05172 * 359.67845 * 6 5 4 8 8 C 1.38746 * 119.94474 * 0.59340 * 7 6 5 9 9 O 1.35905 * 120.05362 * 179.69986 * 8 7 6 10 10 C 1.42896 * 117.00269 * 359.72999 * 9 8 7 11 11 C 1.52998 * 109.47507 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47262 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46927 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00142 * 0.02562 * 13 12 11 15 15 N 1.34784 * 119.99658 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99715 * 184.87174 * 15 13 12 17 17 C 1.52994 * 112.84960 * 284.71995 * 16 15 13 18 18 O 1.42905 * 109.47194 * 312.30975 * 17 16 15 19 19 C 1.53780 * 113.61300 * 55.91561 * 16 15 13 20 20 C 1.53787 * 87.08105 * 89.11218 * 19 16 15 21 21 H 1.09004 * 113.61196 * 140.06163 * 20 19 16 22 22 O 1.42892 * 113.61445 * 270.88187 * 20 19 16 23 23 C 1.53779 * 113.61270 * 153.41148 * 16 15 13 24 24 C 1.38166 * 119.97705 * 300.00028 * 4 2 1 25 25 H 0.96696 * 114.00121 * 300.00028 * 1 2 3 26 26 H 1.08999 * 109.47030 * 120.00763 * 2 1 3 27 27 H 1.48505 * 110.00020 * 300.00139 * 3 2 1 28 28 H 1.48507 * 109.99671 * 61.31891 * 3 2 1 29 29 H 1.08001 * 119.94689 * 359.97438 * 5 4 2 30 30 H 1.07991 * 119.96907 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.02563 * 180.32209 * 7 6 5 32 32 H 1.09000 * 109.47111 * 59.99573 * 10 9 8 33 33 H 1.09003 * 109.47040 * 299.99827 * 10 9 8 34 34 H 1.09008 * 109.46794 * 60.00088 * 11 10 9 35 35 H 1.08995 * 109.47213 * 300.00450 * 11 10 9 36 36 H 1.09000 * 109.47192 * 60.00023 * 12 11 10 37 37 H 1.09003 * 109.47203 * 300.00128 * 12 11 10 38 38 H 0.97003 * 120.00124 * 4.87553 * 15 13 12 39 39 H 1.08996 * 109.47096 * 72.31083 * 17 16 15 40 40 H 1.08995 * 109.47108 * 192.31239 * 17 16 15 41 41 H 0.96697 * 113.99716 * 180.02562 * 18 17 16 42 42 H 1.09004 * 113.61353 * 334.56822 * 19 16 15 43 43 H 1.08998 * 113.68948 * 203.67260 * 19 16 15 44 44 H 0.96703 * 113.99645 * 179.97438 * 22 20 19 45 45 H 1.08992 * 113.61324 * 156.33522 * 23 16 15 46 46 H 1.09006 * 113.61097 * 25.43228 * 23 16 15 47 47 H 1.07998 * 120.02402 * 0.04339 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 -1.2305 5 6 2.7264 -0.0381 -2.1399 6 6 3.1894 -0.6874 -3.2698 7 6 2.8636 -2.0117 -3.4889 8 6 2.0610 -2.6869 -2.5806 9 8 1.7341 -3.9882 -2.7972 10 6 2.2468 -4.5971 -3.9840 11 6 1.7771 -6.0515 -4.0548 12 6 2.3255 -6.7032 -5.3258 13 6 1.8624 -8.1355 -5.3958 14 8 1.1622 -8.5902 -4.5160 15 7 2.2255 -8.9110 -6.4367 16 6 1.6896 -10.2689 -6.5604 17 6 2.3357 -11.2538 -5.5841 18 8 3.7565 -11.1082 -5.6310 19 6 0.1528 -10.3264 -6.5668 20 6 0.2314 -10.1609 -8.0938 21 1 -0.4864 -10.7755 -8.6370 22 8 0.2315 -8.7978 -8.5225 23 6 1.6364 -10.7804 -8.0097 24 6 1.5971 -2.0333 -1.4486 25 1 -0.3933 0.4417 0.7650 26 1 1.7923 -0.5139 0.8899 27 1 1.5615 2.4679 -1.2085 28 1 1.5878 2.4584 1.2243 29 1 2.9865 0.9958 -1.9676 30 1 3.8100 -0.1599 -3.9788 31 1 3.2297 -2.5198 -4.3688 32 1 3.3362 -4.5679 -3.9658 33 1 1.8833 -4.0546 -4.8568 34 1 0.6876 -6.0809 -4.0728 35 1 2.1408 -6.5936 -3.1820 36 1 3.4150 -6.6736 -5.3082 37 1 1.9614 -6.1609 -6.1984 38 1 2.8416 -8.5701 -7.1038 39 1 1.9825 -11.0483 -4.5737 40 1 2.0655 -12.2722 -5.8633 41 1 4.2327 -11.7034 -5.0360 42 1 -0.3178 -9.4839 -6.0600 43 1 -0.2507 -11.2888 -6.2521 44 1 0.2811 -8.6873 -9.4819 45 1 1.6398 -11.8674 -8.0894 46 1 2.3635 -10.3044 -8.6676 47 1 0.9756 -2.5579 -0.7381 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341542_4549616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:34 Heat of formation + Delta-G solvation = -152.350538 kcal Electronic energy + Delta-G solvation = -28840.344142 eV Core-core repulsion = 24569.961101 eV Total energy + Delta-G solvation = -4270.383041 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.76891 -41.24896 -39.68282 -39.08830 -37.57191 -37.48420 -35.90954 -34.89734 -33.79051 -32.59246 -31.24221 -28.97146 -28.01438 -26.96078 -26.80242 -24.08020 -23.65235 -22.95242 -21.78583 -21.39913 -20.30976 -18.96964 -18.60120 -18.33844 -18.31515 -17.97207 -17.46106 -17.26530 -17.06273 -16.87807 -16.51699 -16.08415 -15.86428 -15.68679 -15.55673 -15.12249 -14.86046 -14.54366 -14.49812 -14.23992 -13.94023 -13.76138 -13.55817 -13.41043 -13.33089 -13.20699 -13.04923 -12.70784 -12.66289 -12.41292 -12.23512 -12.14159 -11.96980 -11.67197 -11.62113 -11.46875 -11.11407 -10.93449 -10.62599 -10.58310 -9.91227 -9.89220 -9.25145 -4.92248 0.20805 0.40351 1.27767 1.61209 1.68435 1.90712 1.97107 2.36560 2.63894 3.04406 3.14010 3.35734 3.51937 3.56882 3.64579 3.74983 3.79441 3.85073 3.86736 3.98375 4.10713 4.13531 4.21285 4.26617 4.33686 4.34678 4.39144 4.40582 4.45623 4.51948 4.59556 4.64258 4.65503 4.69886 4.82057 4.89513 4.98050 4.98425 5.00551 5.06348 5.13997 5.27275 5.37893 5.46226 5.64755 5.73251 6.41445 6.55735 6.59855 6.77147 6.89035 7.31309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.097 4.097 3 Si 0.781 3.219 4 C -0.048 4.048 5 C -0.162 4.162 6 C -0.071 4.071 7 C -0.207 4.207 8 C 0.115 3.885 9 O -0.338 6.338 10 C 0.059 3.941 11 C -0.097 4.097 12 C -0.127 4.127 13 C 0.513 3.487 14 O -0.586 6.586 15 N -0.681 5.681 16 C 0.147 3.853 17 C 0.077 3.923 18 O -0.581 6.581 19 C -0.141 4.141 20 C 0.084 3.916 21 H 0.090 0.910 22 O -0.565 6.565 23 C -0.150 4.150 24 C -0.153 4.153 25 H 0.395 0.605 26 H 0.092 0.908 27 H -0.295 1.295 28 H -0.285 1.285 29 H 0.148 0.852 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.413 0.587 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.393 0.607 42 H 0.056 0.944 43 H 0.115 0.885 44 H 0.397 0.603 45 H 0.118 0.882 46 H 0.088 0.912 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.279 -1.296 -5.806 8.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.204 4.204 3 Si 0.685 3.315 4 C -0.048 4.048 5 C -0.179 4.179 6 C -0.089 4.089 7 C -0.225 4.225 8 C 0.070 3.930 9 O -0.253 6.253 10 C -0.015 4.015 11 C -0.135 4.135 12 C -0.166 4.166 13 C 0.301 3.699 14 O -0.466 6.466 15 N -0.332 5.332 16 C 0.060 3.940 17 C -0.002 4.002 18 O -0.388 6.388 19 C -0.179 4.179 20 C 0.025 3.975 21 H 0.108 0.892 22 O -0.373 6.373 23 C -0.188 4.188 24 C -0.172 4.172 25 H 0.245 0.755 26 H 0.110 0.890 27 H -0.223 1.223 28 H -0.213 1.213 29 H 0.165 0.835 30 H 0.180 0.820 31 H 0.172 0.828 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.249 0.751 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.243 0.757 42 H 0.074 0.926 43 H 0.134 0.866 44 H 0.248 0.752 45 H 0.137 0.863 46 H 0.107 0.893 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.353 -0.695 -5.445 7.667 hybrid contribution -1.078 -0.794 0.387 1.394 sum 4.275 -1.489 -5.058 6.787 Atomic orbital electron populations 1.86554 1.18637 1.80876 1.50981 1.25234 0.84098 1.12804 0.98262 0.93965 0.90107 0.70966 0.76487 1.19301 0.96936 0.92746 0.95863 1.21152 1.00849 1.00694 0.95218 1.21302 0.97497 0.93472 0.96648 1.21604 1.02719 0.96881 1.01327 1.19196 0.95249 0.83591 0.94970 1.86045 1.71706 1.22853 1.44689 1.22973 0.99727 0.93041 0.85776 1.21102 1.01331 0.92956 0.98112 1.21490 1.04303 0.91092 0.99753 1.20996 0.79245 0.88893 0.80745 1.90685 1.40205 1.75980 1.39737 1.45265 1.47920 1.13224 1.26773 1.21369 0.93356 0.82688 0.96599 1.22482 0.81296 0.98299 0.98145 1.86395 1.18045 1.66161 1.68215 1.23426 0.94882 1.03459 0.96144 1.22688 0.96490 0.83513 0.94829 0.89178 1.86462 1.96724 1.24598 1.29543 1.23930 0.98318 1.02859 0.93669 1.20324 1.03929 0.95042 0.97908 0.75463 0.89038 1.22297 1.21257 0.83534 0.82032 0.82827 0.89623 0.90179 0.92488 0.92051 0.85939 0.86209 0.75066 0.95174 0.90674 0.75731 0.92551 0.86649 0.75228 0.86337 0.89301 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.39 12.74 -148.98 -1.90 -5.29 16 2 C -0.10 -0.27 2.81 71.24 0.20 -0.07 16 3 Si 0.78 -0.60 29.79 68.60 2.04 1.45 16 4 C -0.05 -0.30 5.42 -19.88 -0.11 -0.41 16 5 C -0.16 -0.38 8.67 22.29 0.19 -0.18 16 6 C -0.07 -0.02 10.04 22.26 0.22 0.20 16 7 C -0.21 -0.49 9.04 22.36 0.20 -0.29 16 8 C 0.12 0.94 6.69 22.50 0.15 1.09 16 9 O -0.34 -3.13 10.14 -92.48 -0.94 -4.07 16 10 C 0.06 0.07 4.74 71.98 0.34 0.41 16 11 C -0.10 -0.38 4.87 30.59 0.15 -0.23 16 12 C -0.13 0.17 5.70 29.85 0.17 0.34 16 13 C 0.51 3.09 7.34 87.66 0.64 3.74 16 14 O -0.59 -8.76 14.00 -3.03 -0.04 -8.81 16 15 N -0.68 -1.05 4.35 -420.53 -1.83 -2.88 16 16 C 0.15 0.19 0.81 4.13 0.00 0.20 16 17 C 0.08 0.13 6.47 71.98 0.47 0.60 16 18 O -0.58 -0.86 13.40 -148.98 -2.00 -2.85 16 19 C -0.14 -0.38 6.71 31.12 0.21 -0.18 16 20 C 0.08 -0.22 5.28 31.12 0.16 -0.05 16 21 H 0.09 -0.54 8.14 -2.38 -0.02 -0.56 16 22 O -0.57 0.73 13.09 -148.98 -1.95 -1.22 16 23 C -0.15 0.68 7.22 31.12 0.22 0.91 16 24 C -0.15 -1.50 9.55 22.37 0.21 -1.29 16 25 H 0.39 -1.03 8.74 -74.06 -0.65 -1.68 16 26 H 0.09 -0.05 7.96 -2.39 -0.02 -0.07 16 27 H -0.30 -1.77 7.11 99.48 0.71 -1.06 16 28 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 29 H 0.15 -0.34 4.87 -2.91 -0.01 -0.36 16 30 H 0.16 -1.02 8.06 -2.92 -0.02 -1.04 16 31 H 0.15 -0.51 6.30 -2.91 -0.02 -0.53 16 32 H 0.09 -0.27 7.65 -2.39 -0.02 -0.29 16 33 H 0.08 -0.18 7.67 -2.39 -0.02 -0.19 16 34 H 0.06 0.50 8.10 -2.38 -0.02 0.48 16 35 H 0.06 0.49 8.10 -2.39 -0.02 0.47 16 36 H 0.12 -0.80 8.14 -2.39 -0.02 -0.82 16 37 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.41 -1.25 8.75 -92.71 -0.81 -2.06 16 39 H 0.03 0.21 7.68 -2.39 -0.02 0.19 16 40 H 0.08 -0.23 7.93 -2.39 -0.02 -0.25 16 41 H 0.39 -2.25 9.12 -74.06 -0.68 -2.93 16 42 H 0.06 0.60 6.72 -2.38 -0.02 0.58 16 43 H 0.12 -0.08 8.10 -2.39 -0.02 -0.10 16 44 H 0.40 -3.94 9.12 -74.05 -0.68 -4.62 16 45 H 0.12 -0.89 7.95 -2.39 -0.02 -0.91 16 46 H 0.09 -0.50 8.13 -2.38 -0.02 -0.52 16 47 H 0.12 1.34 8.06 -2.91 -0.02 1.31 16 Total: 0.00 -29.79 386.52 -4.90 -34.70 By element: Atomic # 1 Polarization: -14.05 SS G_CDS: -1.74 Total: -15.79 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 3.45 Total: 4.78 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -1.83 Total: -2.88 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -6.82 Total: -22.24 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: 2.04 Total: 1.45 kcal Total: -29.79 -4.90 -34.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_4549616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.654 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds