Wall clock time and date at job start Tue Mar 9 2021 12:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35966 * 116.99819 * 2 1 4 4 C 1.39450 * 120.11760 * 180.02562 * 3 2 1 5 5 O 1.34777 * 133.24473 * 0.35936 * 4 3 2 6 6 C 1.34926 * 110.84516 * 180.02562 * 5 4 3 7 7 C 1.46991 * 125.14195 * 179.87616 * 6 5 4 8 8 O 1.21655 * 119.99907 * 179.69267 * 7 6 5 9 9 N 1.34776 * 119.99724 * 359.69482 * 7 6 5 10 10 C 1.46500 * 119.99722 * 185.00243 * 9 7 6 11 11 C 1.53009 * 112.84738 * 284.14932 * 10 9 7 12 12 O 1.42901 * 109.46928 * 304.68448 * 11 10 9 13 13 C 1.53782 * 113.61694 * 55.34136 * 10 9 7 14 14 C 1.53778 * 87.07937 * 139.98393 * 13 10 9 15 15 H 1.09003 * 113.61642 * 89.11730 * 14 13 10 16 16 O 1.42902 * 113.61254 * 219.93623 * 14 13 10 17 17 C 1.53776 * 87.08381 * 334.56999 * 14 13 10 18 18 C 1.35816 * 109.71519 * 359.60805 * 6 5 4 19 19 C 1.40605 * 119.13682 * 180.02562 * 4 3 2 20 20 C 1.39780 * 120.11760 * 359.97438 * 19 4 3 21 21 C 1.50709 * 120.09227 * 179.97438 * 20 19 4 22 22 O 1.42892 * 109.47161 * 285.00480 * 21 20 19 23 23 Si 1.86295 * 109.46839 * 165.00173 * 21 20 19 24 24 C 1.36633 * 119.81399 * 359.97438 * 20 19 4 25 25 C 1.38260 * 120.12501 * 0.02562 * 3 2 1 26 26 H 1.08994 * 109.47017 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47053 * 300.00182 * 1 2 3 28 28 H 1.08999 * 109.47317 * 59.99692 * 1 2 3 29 29 H 0.96994 * 120.00466 * 4.99234 * 9 7 6 30 30 H 1.08993 * 109.47071 * 64.68596 * 11 10 9 31 31 H 1.09002 * 109.46985 * 184.68837 * 11 10 9 32 32 H 0.96693 * 114.00338 * 179.97438 * 12 11 10 33 33 H 1.09003 * 113.61409 * 254.53274 * 13 10 9 34 34 H 1.09002 * 113.61298 * 25.34963 * 13 10 9 35 35 H 0.96711 * 113.99816 * 180.02562 * 16 14 13 36 36 H 1.09002 * 113.61686 * 270.88793 * 17 14 13 37 37 H 1.09000 * 113.62000 * 139.98506 * 17 14 13 38 38 H 1.07999 * 126.95295 * 180.19354 * 18 6 5 39 39 H 1.09003 * 109.46829 * 45.00632 * 21 20 19 40 40 H 0.96700 * 114.00520 * 300.00084 * 22 21 20 41 41 H 1.48507 * 109.99787 * 58.68732 * 23 21 20 42 42 H 1.48497 * 110.00076 * 180.02562 * 23 21 20 43 43 H 1.07999 * 119.75350 * 179.97438 * 24 20 19 44 44 H 1.08003 * 119.65614 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2874 -0.0005 5 8 4.4141 0.3573 -0.0073 6 6 5.6318 0.9386 -0.0039 7 6 6.9131 0.2184 -0.0067 8 8 7.9596 0.8388 -0.0088 9 7 6.9286 -1.1293 -0.0070 10 6 8.2011 -1.8472 0.1008 11 6 9.0017 -1.8362 -1.2030 12 8 8.1960 -2.3589 -2.2611 13 6 9.0288 -1.4520 1.3352 14 6 9.3805 -2.9421 1.4788 15 1 10.2737 -3.2351 0.9269 16 8 9.3894 -3.4003 2.8323 17 6 8.0695 -3.2427 0.7333 18 6 5.4944 2.2898 -0.0034 19 6 4.0555 2.5509 0.0000 20 6 3.2765 3.7116 0.0006 21 6 3.9382 5.0657 0.0017 22 8 4.4603 5.3396 1.3034 23 14 2.6866 6.3687 -0.4523 24 6 1.9136 3.6151 0.0000 25 6 1.2957 2.3726 0.0005 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 6.0973 -1.6239 -0.0784 30 1 9.2950 -0.8137 -1.4407 31 1 9.8934 -2.4523 -1.0870 32 1 8.6404 -2.3815 -3.1196 33 1 9.8867 -0.8213 1.1020 34 1 8.4281 -1.0625 2.1572 35 1 9.6104 -4.3368 2.9292 36 1 7.2064 -3.3441 1.3913 37 1 8.1530 -4.0577 0.0144 38 1 6.2874 3.0230 -0.0038 39 1 4.7508 5.0736 -0.7247 40 1 3.7914 5.3483 2.0017 41 1 1.5578 6.3468 0.5124 42 1 3.3267 7.7087 -0.4553 43 1 1.3128 4.5125 0.0009 44 1 0.2174 2.3120 0.0005 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341542_6672420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:17 Heat of formation + Delta-G solvation = -131.866670 kcal Electronic energy + Delta-G solvation = -31405.895166 eV Core-core repulsion = 26872.341137 eV Total energy + Delta-G solvation = -4533.554029 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.80542 -41.83909 -40.70821 -39.71632 -39.14986 -37.58431 -37.13947 -36.25659 -34.28416 -33.69566 -31.95273 -31.02473 -28.71438 -28.18390 -27.08171 -26.37822 -25.57155 -24.04281 -23.58958 -22.00911 -21.75823 -20.15632 -19.89328 -19.10013 -18.97474 -18.61744 -18.18033 -17.89494 -17.80006 -17.13608 -16.99834 -16.67501 -16.40636 -16.22365 -16.16672 -15.89174 -15.81775 -15.14328 -14.81537 -14.75269 -14.60882 -14.58253 -14.24415 -13.82801 -13.66496 -13.50539 -13.42876 -13.31514 -13.28843 -12.93907 -12.49563 -12.28744 -12.14606 -12.01864 -11.95729 -11.67348 -11.52488 -11.06737 -11.02364 -10.89125 -10.62278 -10.39326 -9.87486 -9.04613 -4.89431 -0.71303 0.06191 0.57497 1.14046 1.29393 1.59123 1.80980 1.84159 1.97279 2.10811 2.35819 2.84455 3.06133 3.22109 3.31126 3.37294 3.52332 3.58020 3.62589 3.65019 3.78142 3.83661 3.92658 3.99558 4.13246 4.19364 4.30521 4.35728 4.40122 4.40947 4.47065 4.48925 4.59883 4.65100 4.74412 4.79737 4.82898 4.83452 4.87669 4.99896 5.01317 5.17707 5.23103 5.34345 5.54994 6.14208 6.25276 6.48619 6.73517 6.78680 6.85054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.335 6.335 3 C 0.137 3.863 4 C 0.019 3.981 5 O -0.183 6.183 6 C -0.035 4.035 7 C 0.603 3.397 8 O -0.536 6.536 9 N -0.686 5.686 10 C 0.145 3.855 11 C 0.086 3.914 12 O -0.581 6.581 13 C -0.126 4.126 14 C 0.088 3.912 15 H 0.115 0.885 16 O -0.576 6.576 17 C -0.152 4.152 18 C -0.112 4.112 19 C -0.096 4.096 20 C -0.100 4.100 21 C -0.091 4.091 22 O -0.548 6.548 23 Si 0.784 3.216 24 C -0.088 4.088 25 C -0.165 4.165 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.414 0.586 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.399 0.601 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.400 0.600 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.173 0.827 39 H 0.114 0.886 40 H 0.386 0.614 41 H -0.261 1.261 42 H -0.304 1.304 43 H 0.167 0.833 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.272 -3.081 -3.381 6.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.249 6.249 3 C 0.091 3.909 4 C -0.029 4.029 5 O -0.086 6.086 6 C -0.085 4.085 7 C 0.389 3.611 8 O -0.415 6.415 9 N -0.336 5.336 10 C 0.059 3.941 11 C 0.007 3.993 12 O -0.390 6.390 13 C -0.165 4.165 14 C 0.028 3.972 15 H 0.132 0.868 16 O -0.385 6.385 17 C -0.191 4.191 18 C -0.133 4.133 19 C -0.097 4.097 20 C -0.100 4.100 21 C -0.198 4.198 22 O -0.356 6.356 23 Si 0.687 3.313 24 C -0.106 4.106 25 C -0.183 4.183 26 H 0.133 0.867 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.251 0.749 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.250 0.750 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.251 0.749 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.190 0.810 39 H 0.132 0.868 40 H 0.236 0.764 41 H -0.187 1.187 42 H -0.232 1.232 43 H 0.184 0.816 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.933 -1.900 -2.852 6.007 hybrid contribution 0.403 -0.729 0.679 1.074 sum -4.530 -2.629 -2.173 5.671 Atomic orbital electron populations 1.23495 0.75249 1.06034 1.03217 1.86151 1.24399 1.25882 1.88442 1.18001 0.86060 0.86896 0.99959 1.19265 0.88309 0.87159 1.08166 1.84021 1.12819 1.35220 1.76491 1.21999 0.84026 0.92820 1.09630 1.16694 0.85184 0.82594 0.76672 1.90863 1.31013 1.68075 1.51587 1.45687 1.10764 1.04786 1.72391 1.21722 0.84191 0.94081 0.94064 1.22234 0.92701 0.98590 0.85739 1.86396 1.44732 1.86598 1.21269 1.23324 1.00303 0.96964 0.95882 1.23244 0.96981 0.93769 0.83169 0.86790 1.86507 1.93331 1.32785 1.25893 1.23928 1.00252 0.95115 0.99756 1.22844 0.95459 0.94252 1.00704 1.19579 0.92272 0.92804 1.05017 1.19571 0.93485 0.93854 1.03137 1.25419 1.07814 0.98655 0.87924 1.86604 1.38981 1.92797 1.17247 0.93860 0.75382 0.73334 0.88723 1.20894 0.92890 0.98836 0.97931 1.21379 1.01826 0.89532 1.05576 0.86663 0.90776 0.90373 0.74893 0.93598 0.89506 0.75023 0.89855 0.90490 0.74949 0.88822 0.88236 0.80983 0.86765 0.76442 1.18698 1.23236 0.81590 0.80187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -1.33 10.50 -93.17 -0.98 -2.31 16 3 C 0.14 0.61 6.70 22.57 0.15 0.76 16 4 C 0.02 0.17 7.35 23.14 0.17 0.34 16 5 O -0.18 -2.03 10.29 -13.40 -0.14 -2.17 16 6 C -0.03 -0.38 7.07 24.00 0.17 -0.21 16 7 C 0.60 6.58 7.47 86.54 0.65 7.22 16 8 O -0.54 -8.10 15.38 -4.21 -0.06 -8.16 16 9 N -0.69 -4.26 5.09 -424.15 -2.16 -6.42 16 10 C 0.15 0.44 0.86 4.13 0.00 0.44 16 11 C 0.09 0.07 6.35 71.99 0.46 0.53 16 12 O -0.58 -0.62 13.54 -148.98 -2.02 -2.63 16 13 C -0.13 -0.58 6.02 31.12 0.19 -0.40 16 14 C 0.09 -0.07 4.86 31.12 0.15 0.08 16 15 H 0.11 -0.68 7.61 -2.39 -0.02 -0.70 16 16 O -0.58 -0.82 13.67 -148.98 -2.04 -2.85 16 17 C -0.15 0.14 7.26 31.12 0.23 0.36 16 18 C -0.11 -1.11 10.68 23.79 0.25 -0.86 16 19 C -0.10 -0.74 6.16 -20.25 -0.12 -0.87 16 20 C -0.10 -0.23 5.26 -19.86 -0.10 -0.33 16 21 C -0.09 -0.09 2.70 71.24 0.19 0.10 16 22 O -0.55 -2.44 12.88 -148.98 -1.92 -4.35 16 23 Si 0.78 -2.69 30.25 68.60 2.08 -0.62 16 24 C -0.09 0.21 8.62 22.02 0.19 0.40 16 25 C -0.16 0.36 9.03 22.40 0.20 0.56 16 26 H 0.12 -0.95 8.14 -2.39 -0.02 -0.97 16 27 H 0.07 -0.66 7.66 -2.38 -0.02 -0.67 16 28 H 0.08 -0.73 7.66 -2.39 -0.02 -0.75 16 29 H 0.41 1.81 8.49 -92.71 -0.79 1.02 16 30 H 0.05 0.21 7.55 -2.39 -0.02 0.19 16 31 H 0.09 -0.41 7.31 -2.39 -0.02 -0.43 16 32 H 0.40 -2.79 9.12 -74.06 -0.68 -3.46 16 33 H 0.08 0.43 8.10 -2.39 -0.02 0.41 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.40 -3.11 9.12 -74.05 -0.68 -3.79 16 36 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.10 -0.33 8.10 -2.39 -0.02 -0.35 16 38 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.11 0.13 7.96 -2.39 -0.02 0.11 16 40 H 0.39 -0.78 8.70 -74.06 -0.64 -1.42 16 41 H -0.26 0.72 6.69 99.48 0.67 1.39 16 42 H -0.30 -1.49 7.11 99.48 0.71 -0.79 16 43 H 0.17 -1.32 4.81 -2.91 -0.01 -1.33 16 44 H 0.18 -1.69 6.26 -2.91 -0.02 -1.71 16 Total: 0.00 -26.35 372.55 -5.02 -31.38 By element: Atomic # 1 Polarization: -9.37 SS G_CDS: -1.67 Total: -11.04 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 3.88 Total: 9.18 kcal Atomic # 7 Polarization: -4.26 SS G_CDS: -2.16 Total: -6.42 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -7.15 Total: -22.48 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.08 Total: -0.62 kcal Total: -26.35 -5.02 -31.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341542_6672420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.491 kcal (2) G-P(sol) polarization free energy of solvation -26.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds