Wall clock time and date at job start Tue Mar 9 2021 12:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 113.99950 * 2 1 4 4 H 1.09007 * 112.91059 * 341.24391 * 3 2 1 5 5 C 1.53777 * 113.61763 * 112.50388 * 3 2 1 6 6 C 1.53780 * 87.08559 * 139.97959 * 5 3 2 7 7 C 1.53002 * 113.61420 * 89.11481 * 6 5 3 8 8 O 1.42891 * 109.47181 * 86.46998 * 7 6 5 9 9 N 1.46501 * 113.69103 * 220.01126 * 6 5 3 10 10 C 1.34773 * 120.00039 * 163.25565 * 9 6 5 11 11 O 1.21574 * 119.99943 * 4.92928 * 10 9 6 12 12 C 1.47693 * 120.00059 * 184.93555 * 10 9 6 13 13 C 1.39806 * 120.15761 * 179.97438 * 12 10 9 14 14 F 1.35101 * 120.07889 * 359.97438 * 13 12 10 15 15 C 1.38315 * 119.83354 * 179.97438 * 13 12 10 16 16 C 1.38182 * 120.14231 * 359.97438 * 15 13 12 17 17 C 1.50705 * 119.83919 * 180.02562 * 16 15 13 18 18 O 1.42898 * 109.47010 * 15.00384 * 17 16 15 19 19 Si 1.86306 * 109.46821 * 134.99883 * 17 16 15 20 20 C 1.38651 * 120.31672 * 359.97438 * 16 15 13 21 21 F 1.35106 * 119.91432 * 180.02562 * 20 16 15 22 22 C 1.38062 * 120.16898 * 359.76391 * 20 16 15 23 23 C 1.53779 * 113.61245 * 210.00080 * 3 2 1 24 24 H 1.09003 * 109.47417 * 60.00302 * 1 2 3 25 25 H 1.09000 * 109.47513 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47887 * 300.00398 * 1 2 3 27 27 H 1.08995 * 113.61517 * 25.42331 * 5 3 2 28 28 H 1.09006 * 113.60930 * 254.53141 * 5 3 2 29 29 H 1.08997 * 109.47129 * 326.46964 * 7 6 5 30 30 H 1.09002 * 109.46686 * 206.47193 * 7 6 5 31 31 H 0.96693 * 114.00385 * 179.97438 * 8 7 6 32 32 H 0.96993 * 119.99488 * 343.24720 * 9 6 5 33 33 H 1.07999 * 119.92624 * 180.02562 * 15 13 12 34 34 H 1.08996 * 109.47128 * 255.00234 * 17 16 15 35 35 H 0.96696 * 114.00273 * 59.99487 * 18 17 16 36 36 H 1.48496 * 110.00000 * 58.68534 * 19 17 16 37 37 H 1.48503 * 109.99576 * 179.97438 * 19 17 16 38 38 H 1.07998 * 120.08074 * 180.27532 * 22 20 16 39 39 H 1.09003 * 113.61591 * 105.47066 * 23 3 2 40 40 H 1.08995 * 113.61424 * 334.56663 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0798 -0.3229 5 6 2.7534 1.6489 1.3017 6 6 3.8227 2.3181 0.4222 7 6 3.5413 3.7936 0.1311 8 8 4.0720 4.5970 1.1870 9 7 5.1941 2.0798 0.8789 10 6 6.2302 2.3050 0.0470 11 8 6.0343 2.7901 -1.0504 12 6 7.6036 1.9622 0.4683 13 6 8.6808 2.1938 -0.3924 14 9 8.4684 2.7319 -1.6133 15 6 9.9643 1.8707 0.0093 16 6 10.1828 1.3208 1.2580 17 6 11.5842 0.9719 1.6889 18 8 12.5223 1.6056 0.8168 19 14 11.8623 1.5618 3.4341 20 6 9.1192 1.0895 2.1168 21 9 9.3423 0.5520 3.3361 22 6 7.8333 1.4121 1.7313 23 6 3.3755 1.3718 -0.7045 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3635 0.5139 0.8899 27 1 3.1165 0.7741 1.8410 28 1 2.2139 2.3477 1.9411 29 1 2.4651 3.9512 0.0605 30 1 4.0122 4.0743 -0.8110 31 1 3.9301 5.5461 1.0684 32 1 5.3564 1.7602 1.7802 33 1 10.7975 2.0494 -0.6542 34 1 11.7195 -0.1087 1.6446 35 1 12.4591 2.5704 0.8054 36 1 10.8724 0.9344 4.3460 37 1 13.2405 1.2232 3.8710 38 1 7.0064 1.2354 2.4031 39 1 3.3383 1.8470 -1.6848 40 1 3.9087 0.4212 -0.7138 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_12360598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:17 Heat of formation + Delta-G solvation = -172.327014 kcal Electronic energy + Delta-G solvation = -28996.582855 eV Core-core repulsion = 24416.183048 eV Total energy + Delta-G solvation = -4580.399807 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.44542 -50.08228 -41.92835 -40.63838 -39.56602 -38.02327 -37.60689 -36.69500 -34.60394 -32.77309 -31.42428 -28.85182 -27.82004 -27.27743 -26.88933 -24.72274 -24.19480 -23.26587 -21.78229 -20.29672 -19.61681 -19.03429 -18.65415 -18.47051 -18.03570 -17.69295 -17.48205 -17.18903 -16.85665 -16.72148 -16.25195 -16.07751 -16.05847 -15.87724 -15.74607 -15.70819 -15.40411 -15.10369 -14.84316 -14.43859 -14.18331 -13.70914 -13.66395 -13.51387 -13.29400 -13.09601 -12.96238 -12.70584 -12.53859 -12.43735 -11.92064 -11.79620 -11.56865 -11.26778 -10.99478 -10.74728 -10.52723 -10.29695 -10.17450 -9.71667 -5.00082 -0.76595 -0.27795 1.14942 1.50201 1.65471 1.81817 1.98550 2.30901 2.77732 2.81569 2.88633 2.97276 3.14531 3.19296 3.22575 3.52105 3.52888 3.55727 3.65388 3.82213 3.95864 4.15813 4.20420 4.34310 4.37388 4.40438 4.47240 4.54545 4.57073 4.61627 4.65317 4.66738 4.74792 4.78605 4.83156 4.88459 4.90139 4.98917 5.37143 5.42114 6.22082 6.34350 6.63843 6.77723 7.03230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.397 6.397 3 C 0.066 3.934 4 H 0.111 0.889 5 C -0.139 4.139 6 C 0.153 3.847 7 C 0.086 3.914 8 O -0.579 6.579 9 N -0.688 5.688 10 C 0.562 3.438 11 O -0.554 6.554 12 C -0.158 4.158 13 C 0.140 3.860 14 F -0.126 7.126 15 C -0.115 4.115 16 C -0.084 4.084 17 C -0.071 4.071 18 O -0.546 6.546 19 Si 0.764 3.236 20 C 0.072 3.928 21 F -0.122 7.122 22 C -0.072 4.072 23 C -0.135 4.135 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.397 0.603 32 H 0.413 0.587 33 H 0.176 0.824 34 H 0.128 0.872 35 H 0.400 0.600 36 H -0.255 1.255 37 H -0.302 1.302 38 H 0.175 0.825 39 H 0.075 0.925 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.281 2.727 3.823 5.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.316 6.316 3 C 0.008 3.992 4 H 0.129 0.871 5 C -0.177 4.177 6 C 0.066 3.934 7 C 0.007 3.993 8 O -0.387 6.387 9 N -0.340 5.340 10 C 0.349 3.651 11 O -0.433 6.433 12 C -0.162 4.162 13 C 0.120 3.880 14 F -0.104 7.104 15 C -0.134 4.134 16 C -0.086 4.086 17 C -0.180 4.180 18 O -0.355 6.355 19 Si 0.667 3.333 20 C 0.052 3.948 21 F -0.100 7.100 22 C -0.091 4.091 23 C -0.174 4.174 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.247 0.753 32 H 0.251 0.749 33 H 0.194 0.806 34 H 0.145 0.855 35 H 0.251 0.749 36 H -0.180 1.180 37 H -0.230 1.230 38 H 0.192 0.808 39 H 0.094 0.906 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.823 1.482 3.974 5.095 hybrid contribution -0.343 -0.002 -0.527 0.629 sum -3.166 1.481 3.447 4.909 Atomic orbital electron populations 1.22990 0.79530 1.03786 1.01064 1.87925 1.21450 1.27591 1.94633 1.23631 0.93575 0.85923 0.96086 0.87144 1.23772 0.95384 1.01166 0.97388 1.21512 0.81104 0.93576 0.97195 1.22225 0.98311 0.88615 0.90108 1.86374 1.82648 1.22976 1.46669 1.45508 1.04665 1.67067 1.16765 1.18032 0.84625 0.77901 0.84554 1.90823 1.85505 1.44305 1.22687 1.19843 0.93181 1.07221 0.95937 1.17923 0.93586 0.95681 0.80834 1.91591 1.95643 1.82705 1.40494 1.20889 0.95685 1.00278 0.96535 1.20467 0.96449 0.98203 0.93442 1.25174 0.84550 1.01717 1.06553 1.86497 1.56225 1.26647 1.66107 0.94263 0.76761 0.89713 0.72578 1.17299 0.93676 1.01638 0.82182 1.91601 1.94450 1.83844 1.40135 1.21268 0.96917 0.96181 0.94741 1.23567 0.96012 0.99408 0.98420 0.93022 0.89043 0.92690 0.87952 0.88533 0.90379 0.93676 0.75336 0.74872 0.80644 0.85505 0.74873 1.18024 1.22969 0.80793 0.90617 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 10.85 113.37 1.23 1.16 16 2 O -0.40 -1.00 10.71 -148.98 -1.60 -2.59 16 3 C 0.07 -0.08 3.96 31.12 0.12 0.04 16 4 H 0.11 -0.56 7.43 -2.38 -0.02 -0.57 16 5 C -0.14 0.42 7.17 31.12 0.22 0.65 16 6 C 0.15 0.06 0.93 4.13 0.00 0.06 16 7 C 0.09 0.01 6.06 71.98 0.44 0.45 16 8 O -0.58 -0.15 13.34 -148.98 -1.99 -2.14 16 9 N -0.69 -0.54 4.88 -423.50 -2.07 -2.60 16 10 C 0.56 3.57 7.43 86.74 0.64 4.22 16 11 O -0.55 -7.61 13.77 -3.95 -0.05 -7.66 16 12 C -0.16 -0.44 5.88 -20.06 -0.12 -0.56 16 13 C 0.14 0.58 7.28 22.67 0.17 0.75 16 14 F -0.13 -1.27 15.55 44.97 0.70 -0.57 16 15 C -0.12 0.14 9.20 22.27 0.20 0.35 16 16 C -0.08 0.20 5.14 -19.78 -0.10 0.10 16 17 C -0.07 0.23 2.96 71.24 0.21 0.44 16 18 O -0.55 1.98 11.63 -148.98 -1.73 0.25 16 19 Si 0.76 -2.45 30.81 68.60 2.11 -0.34 16 20 C 0.07 -0.12 6.65 22.33 0.15 0.03 16 21 F -0.12 -0.03 12.80 44.97 0.58 0.54 16 22 C -0.07 0.18 9.51 22.57 0.21 0.39 16 23 C -0.14 -0.31 6.69 31.12 0.21 -0.10 16 24 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.05 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.10 -0.49 8.10 -2.38 -0.02 -0.51 16 29 H 0.08 -0.38 7.38 -2.39 -0.02 -0.40 16 30 H 0.04 0.21 7.16 -2.39 -0.02 0.20 16 31 H 0.40 -2.78 9.12 -74.06 -0.68 -3.45 16 32 H 0.41 -1.86 6.75 -92.71 -0.63 -2.49 16 33 H 0.18 -0.75 7.06 -2.91 -0.02 -0.77 16 34 H 0.13 -0.32 7.96 -2.39 -0.02 -0.34 16 35 H 0.40 -4.80 8.42 -74.06 -0.62 -5.42 16 36 H -0.25 -0.35 5.26 99.48 0.52 0.17 16 37 H -0.30 -1.34 7.11 99.48 0.71 -0.63 16 38 H 0.17 -1.41 6.42 -2.91 -0.02 -1.43 16 39 H 0.08 0.30 8.10 -2.39 -0.02 0.28 16 40 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 Total: 0.00 -22.00 340.16 -1.39 -23.40 By element: Atomic # 1 Polarization: -15.31 SS G_CDS: -0.94 Total: -16.25 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 3.59 Total: 7.97 kcal Atomic # 7 Polarization: -0.54 SS G_CDS: -2.07 Total: -2.60 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -5.37 Total: -12.15 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 1.27 Total: -0.03 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.11 Total: -0.34 kcal Total: -22.00 -1.39 -23.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_12360598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.929 kcal (2) G-P(sol) polarization free energy of solvation -22.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds