Wall clock time and date at job start Tue Mar 9 2021 12:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 114.00005 * 2 1 4 4 H 1.09000 * 112.84797 * 18.80754 * 3 2 1 5 5 C 1.53783 * 113.61354 * 149.99942 * 3 2 1 6 6 C 1.53780 * 87.07579 * 89.20144 * 5 3 2 7 7 C 1.53001 * 113.61219 * 140.06901 * 6 5 3 8 8 O 1.42896 * 109.47105 * 186.24697 * 7 6 5 9 9 N 1.46505 * 113.61563 * 270.87918 * 6 5 3 10 10 C 1.34772 * 119.99990 * 285.90421 * 9 6 5 11 11 O 1.21283 * 120.00304 * 5.37924 * 10 9 6 12 12 C 1.50702 * 119.99827 * 185.38306 * 10 9 6 13 13 N 1.46499 * 109.47192 * 179.97438 * 12 10 9 14 14 C 1.35045 * 125.93303 * 124.99689 * 13 12 10 15 15 C 1.35080 * 107.98055 * 179.97438 * 14 13 12 16 16 C 1.50701 * 126.07409 * 179.97438 * 15 14 13 17 17 O 1.42901 * 109.46750 * 103.98043 * 16 15 14 18 18 Si 1.86297 * 109.47307 * 343.97580 * 16 15 14 19 19 C 1.40847 * 107.85069 * 0.02562 * 15 14 13 20 20 C 1.48418 * 126.04030 * 180.02562 * 19 15 14 21 21 C 1.39329 * 120.11910 * 319.31156 * 20 19 15 22 22 C 1.38017 * 119.87885 * 179.72192 * 21 20 19 23 23 C 1.38321 * 120.11998 * 0.57846 * 22 21 20 24 24 C 1.38317 * 120.24124 * 359.69043 * 23 22 21 25 25 C 1.38022 * 120.11828 * 0.02562 * 24 23 22 26 26 N 1.31627 * 107.92035 * 359.71458 * 19 15 14 27 27 C 1.53774 * 87.17846 * 25.47242 * 6 5 3 28 28 H 1.09003 * 109.46619 * 299.99981 * 1 2 3 29 29 H 1.08995 * 109.47343 * 59.99564 * 1 2 3 30 30 H 1.08997 * 109.47044 * 180.02562 * 1 2 3 31 31 H 1.08999 * 113.61312 * 334.65361 * 5 3 2 32 32 H 1.08994 * 113.61083 * 203.74629 * 5 3 2 33 33 H 1.08997 * 109.46964 * 306.24468 * 7 6 5 34 34 H 1.08996 * 109.47421 * 66.24579 * 7 6 5 35 35 H 0.96703 * 114.00675 * 179.97438 * 8 7 6 36 36 H 0.97002 * 119.99924 * 105.89479 * 9 6 5 37 37 H 1.09005 * 109.47169 * 59.99743 * 12 10 9 38 38 H 1.09002 * 109.47358 * 299.99578 * 12 10 9 39 39 H 1.08002 * 126.00836 * 0.02562 * 14 13 12 40 40 H 1.09010 * 109.46982 * 223.97607 * 16 15 14 41 41 H 0.96704 * 113.99721 * 180.02562 * 17 16 15 42 42 H 1.48505 * 109.99574 * 59.99811 * 18 16 15 43 43 H 1.48494 * 110.00273 * 181.31682 * 18 16 15 44 44 H 1.08002 * 120.05936 * 359.97438 * 21 20 19 45 45 H 1.08003 * 119.94112 * 180.27192 * 22 21 20 46 46 H 1.07995 * 119.87833 * 179.72103 * 23 22 21 47 47 H 1.07997 * 119.94497 * 180.02562 * 24 23 22 48 48 H 1.08002 * 120.06189 * 180.02562 * 25 24 23 49 49 H 1.09003 * 113.61240 * 89.07235 * 27 6 5 50 50 H 1.09000 * 113.61903 * 219.97891 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 0.3238 5 6 3.3756 1.3719 0.7045 6 6 4.0062 1.0353 -0.6570 7 6 5.2916 1.8131 -0.9462 8 8 5.7207 1.5443 -2.2824 9 7 4.1448 -0.4028 -0.9002 10 6 5.0987 -1.1059 -0.2584 11 8 5.7782 -0.5705 0.5917 12 6 5.3213 -2.5574 -0.5971 13 7 6.4050 -3.0916 0.2314 14 6 6.3300 -4.1778 1.0304 15 6 7.5325 -4.3432 1.6231 16 6 7.8993 -5.4330 2.5971 17 8 8.7013 -6.4132 1.9352 18 14 6.3476 -6.2348 3.2453 19 6 8.3823 -3.3154 1.1699 20 6 9.7985 -3.1149 1.5661 21 6 10.1867 -3.3005 2.8913 22 6 11.5061 -3.1184 3.2531 23 6 12.4400 -2.7405 2.3053 24 6 12.0590 -2.5494 0.9894 25 6 10.7433 -2.7346 0.6155 26 7 7.7005 -2.5680 0.3278 27 6 2.7545 1.6516 -1.3036 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.5176 0.5949 1.4556 32 1 3.6305 2.3667 1.0697 33 1 5.1035 2.8807 -0.8328 34 1 6.0682 1.5047 -0.2463 35 1 6.5320 2.0057 -2.5354 36 1 3.5497 -0.8489 -1.5230 37 1 5.5905 -2.6478 -1.6495 38 1 4.4069 -3.1194 -0.4065 39 1 5.4616 -4.8044 1.1703 40 1 8.4609 -5.0045 3.4273 41 1 8.9745 -7.1467 2.5032 42 1 5.5730 -6.8228 2.1230 43 1 6.6946 -7.2900 4.2308 44 1 9.4574 -3.5904 3.6332 45 1 11.8090 -3.2663 4.2792 46 1 13.4705 -2.5947 2.5936 47 1 12.7922 -2.2548 0.2532 48 1 10.4469 -2.5855 -0.4123 49 1 2.8400 2.7228 -1.4864 50 1 2.3955 1.1002 -2.1726 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_12622748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:24 Heat of formation + Delta-G solvation = -6.597343 kcal Electronic energy + Delta-G solvation = -34885.492755 eV Core-core repulsion = 30269.044377 eV Total energy + Delta-G solvation = -4616.448378 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.51454 -41.70218 -39.94377 -39.55649 -37.92358 -37.75067 -36.58440 -34.85890 -34.04221 -32.40853 -31.92951 -31.45366 -29.30169 -28.39590 -27.28999 -26.84445 -26.00890 -24.43392 -23.51990 -23.29417 -21.92701 -21.51271 -20.85048 -20.33689 -18.61319 -18.46028 -18.33694 -18.20951 -17.59246 -17.50633 -16.78206 -16.65672 -16.53989 -16.21425 -16.05558 -15.97229 -15.73665 -15.62944 -15.19372 -15.02804 -14.87926 -14.68279 -14.39513 -14.29678 -14.19395 -13.84200 -13.69990 -13.59425 -13.50004 -13.31088 -13.24999 -12.74343 -12.68304 -12.35508 -12.18769 -12.15478 -11.98324 -11.96063 -11.58476 -11.50728 -11.31325 -10.89424 -10.53487 -10.51794 -10.24156 -10.00224 -9.88004 -9.80355 -9.29838 -4.86900 0.09810 0.45679 0.79471 1.23125 1.37243 1.54002 1.62826 1.66871 1.97073 2.08237 2.70341 2.88797 3.04127 3.28206 3.46770 3.56253 3.59030 3.61034 3.75240 3.77935 3.89539 3.93740 4.05076 4.07973 4.12975 4.14034 4.25015 4.33430 4.34478 4.41844 4.51949 4.52188 4.56218 4.58868 4.63519 4.64454 4.70096 4.75385 4.82340 4.87231 4.92107 4.97761 4.99869 5.02949 5.10912 5.28423 5.55356 5.56260 5.56481 5.60566 5.87094 6.03137 6.27290 6.51978 6.57698 6.70619 6.72660 7.21338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.383 6.383 3 C 0.067 3.933 4 H 0.096 0.904 5 C -0.141 4.141 6 C 0.156 3.844 7 C 0.075 3.925 8 O -0.581 6.581 9 N -0.681 5.681 10 C 0.504 3.496 11 O -0.554 6.554 12 C 0.110 3.890 13 N -0.357 5.357 14 C 0.070 3.930 15 C -0.224 4.224 16 C -0.052 4.052 17 O -0.558 6.558 18 Si 0.764 3.236 19 C 0.108 3.892 20 C -0.026 4.026 21 C -0.106 4.106 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.127 4.127 25 C -0.115 4.115 26 N -0.289 5.289 27 C -0.139 4.139 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.391 0.609 36 H 0.415 0.585 37 H 0.131 0.869 38 H 0.171 0.829 39 H 0.211 0.789 40 H 0.080 0.920 41 H 0.389 0.611 42 H -0.278 1.278 43 H -0.282 1.282 44 H 0.138 0.862 45 H 0.152 0.848 46 H 0.148 0.852 47 H 0.141 0.859 48 H 0.110 0.890 49 H 0.119 0.881 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.817 1.508 0.817 7.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.302 6.302 3 C 0.009 3.991 4 H 0.114 0.886 5 C -0.179 4.179 6 C 0.069 3.931 7 C -0.004 4.004 8 O -0.388 6.388 9 N -0.333 5.333 10 C 0.289 3.711 11 O -0.431 6.431 12 C -0.014 4.014 13 N -0.138 5.138 14 C -0.075 4.075 15 C -0.235 4.235 16 C -0.161 4.161 17 O -0.367 6.367 18 Si 0.667 3.333 19 C -0.057 4.057 20 C -0.028 4.028 21 C -0.125 4.125 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.145 4.145 25 C -0.135 4.135 26 N -0.110 5.110 27 C -0.177 4.177 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.240 0.760 36 H 0.252 0.748 37 H 0.149 0.851 38 H 0.188 0.812 39 H 0.227 0.773 40 H 0.098 0.902 41 H 0.239 0.761 42 H -0.204 1.204 43 H -0.208 1.208 44 H 0.155 0.845 45 H 0.170 0.830 46 H 0.166 0.834 47 H 0.158 0.842 48 H 0.128 0.872 49 H 0.137 0.863 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.445 2.100 0.092 7.736 hybrid contribution 1.198 -0.964 -0.124 1.543 sum -6.247 1.135 -0.032 6.350 Atomic orbital electron populations 1.22966 0.79534 1.03756 1.00751 1.87847 1.21055 1.26693 1.94560 1.23146 0.94235 0.85879 0.95850 0.88601 1.23584 0.94934 1.03262 0.96147 1.21288 0.93818 0.80842 0.97194 1.22445 0.95812 0.98501 0.83634 1.86387 1.48022 1.74320 1.30093 1.45225 1.34559 1.07764 1.45759 1.20764 0.79907 0.89091 0.81292 1.90763 1.47701 1.71534 1.33085 1.21890 0.89943 0.92778 0.96775 1.48039 1.08918 1.21624 1.35243 1.22736 1.00452 0.91226 0.93064 1.19584 0.93800 1.01072 1.09055 1.24468 1.05339 0.90529 0.95733 1.86604 1.70999 1.37074 1.42024 0.94243 0.77875 0.82561 0.78642 1.20899 0.94210 0.94311 0.96301 1.17996 0.88673 1.01515 0.94617 1.21371 0.97311 0.99389 0.94412 1.21428 0.92324 0.99087 1.01029 1.21588 1.00959 0.98321 0.92830 1.21346 0.95401 1.00135 0.97572 1.21257 0.93821 0.99428 0.98958 1.77689 0.90449 1.21230 1.21634 1.23796 0.92945 1.02808 0.98146 0.93538 0.93000 0.88676 0.92151 0.86776 0.90890 0.94815 0.75971 0.74800 0.85090 0.81211 0.77272 0.90229 0.76113 1.20448 1.20798 0.84466 0.83047 0.83411 0.84167 0.87154 0.86251 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.14 10.85 113.37 1.23 1.09 16 2 O -0.38 0.44 10.14 -148.98 -1.51 -1.07 16 3 C 0.07 -0.19 4.38 31.21 0.14 -0.06 16 4 H 0.10 -0.58 7.87 -2.39 -0.02 -0.60 16 5 C -0.14 -0.12 6.95 31.12 0.22 0.09 16 6 C 0.16 0.20 0.75 4.13 0.00 0.20 16 7 C 0.07 0.27 6.10 71.98 0.44 0.71 16 8 O -0.58 -2.34 13.53 -148.98 -2.02 -4.36 16 9 N -0.68 -0.73 4.57 -420.54 -1.92 -2.65 16 10 C 0.50 2.94 7.49 87.66 0.66 3.59 16 11 O -0.55 -8.45 13.79 -3.04 -0.04 -8.49 16 12 C 0.11 0.00 6.99 85.63 0.60 0.60 16 13 N -0.36 -2.85 3.40 -351.90 -1.19 -4.04 16 14 C 0.07 0.35 9.96 83.47 0.83 1.18 16 15 C -0.22 -1.97 5.37 -19.95 -0.11 -2.08 16 16 C -0.05 -0.20 2.49 71.24 0.18 -0.02 16 17 O -0.56 -3.62 12.86 -148.98 -1.92 -5.54 16 18 Si 0.76 -0.92 30.81 68.60 2.11 1.19 16 19 C 0.11 1.53 6.68 42.53 0.28 1.81 16 20 C -0.03 -0.34 5.76 -20.04 -0.12 -0.45 16 21 C -0.11 -0.84 8.90 22.48 0.20 -0.64 16 22 C -0.12 -0.52 10.03 22.24 0.22 -0.30 16 23 C -0.12 -0.51 10.04 22.31 0.22 -0.29 16 24 C -0.13 -0.91 10.03 22.24 0.22 -0.69 16 25 C -0.12 -1.40 9.77 22.48 0.22 -1.18 16 26 N -0.29 -4.54 11.68 -48.15 -0.56 -5.10 16 27 C -0.14 0.50 7.20 31.21 0.22 0.72 16 28 H 0.05 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.05 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 31 H 0.06 0.40 8.00 -2.39 -0.02 0.38 16 32 H 0.11 -0.24 8.10 -2.39 -0.02 -0.25 16 33 H 0.07 -0.07 8.08 -2.39 -0.02 -0.09 16 34 H 0.03 0.35 6.60 -2.39 -0.02 0.33 16 35 H 0.39 -0.89 9.12 -74.06 -0.68 -1.56 16 36 H 0.41 -1.52 8.63 -92.71 -0.80 -2.32 16 37 H 0.13 -0.40 8.14 -2.38 -0.02 -0.42 16 38 H 0.17 -1.61 8.07 -2.39 -0.02 -1.63 16 39 H 0.21 -0.69 6.37 -2.91 -0.02 -0.71 16 40 H 0.08 0.12 5.36 -2.38 -0.01 0.10 16 41 H 0.39 -0.78 8.74 -74.05 -0.65 -1.43 16 42 H -0.28 -0.76 7.02 99.48 0.70 -0.06 16 43 H -0.28 -0.70 7.11 99.48 0.71 0.00 16 44 H 0.14 0.59 5.99 -2.91 -0.02 0.57 16 45 H 0.15 -0.24 8.06 -2.91 -0.02 -0.27 16 46 H 0.15 -0.18 8.06 -2.91 -0.02 -0.20 16 47 H 0.14 0.39 8.06 -2.91 -0.02 0.36 16 48 H 0.11 1.45 8.06 -2.91 -0.02 1.42 16 49 H 0.12 -0.76 8.06 -2.39 -0.02 -0.78 16 50 H 0.08 -0.31 8.09 -2.39 -0.02 -0.33 16 Total: 0.00 -32.13 416.52 -2.47 -34.60 By element: Atomic # 1 Polarization: -7.77 SS G_CDS: -1.09 Total: -8.86 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.67 Total: 4.31 kcal Atomic # 7 Polarization: -8.11 SS G_CDS: -3.68 Total: -11.79 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -5.48 Total: -19.45 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.11 Total: 1.19 kcal Total: -32.13 -2.47 -34.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_12622748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.005 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds