Wall clock time and date at job start Tue Mar 9 2021 12:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99906 * 2 1 4 4 H 1.08999 * 112.85155 * 18.80825 * 3 2 1 5 5 C 1.53780 * 113.61609 * 150.00214 * 3 2 1 6 6 C 1.53777 * 87.08225 * 89.19746 * 5 3 2 7 7 C 1.53006 * 113.61234 * 140.06473 * 6 5 3 8 8 O 1.42899 * 109.47021 * 186.55244 * 7 6 5 9 9 N 1.46491 * 113.61742 * 270.88650 * 6 5 3 10 10 C 1.34783 * 120.00293 * 294.76871 * 9 6 5 11 11 O 1.21579 * 119.99733 * 5.03682 * 10 9 6 12 12 C 1.47664 * 120.00031 * 185.03646 * 10 9 6 13 13 C 1.39998 * 120.45310 * 353.90218 * 12 10 9 14 14 N 1.31316 * 121.37412 * 179.97438 * 13 12 10 15 15 C 1.32822 * 121.88483 * 0.02562 * 14 13 12 16 16 N 1.37155 * 132.95659 * 179.97438 * 15 14 13 17 17 C 1.36945 * 110.11402 * 179.97438 * 16 15 14 18 18 C 1.34178 * 109.95044 * 0.02562 * 17 16 15 19 19 C 1.50705 * 126.59873 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.46691 * 105.02600 * 19 18 17 21 21 Si 1.86294 * 109.47148 * 345.03106 * 19 18 17 22 22 C 1.41016 * 120.09089 * 0.25903 * 15 14 13 23 23 C 1.39285 * 119.61405 * 359.47569 * 22 15 14 24 24 C 1.50702 * 121.03125 * 180.25095 * 23 22 15 25 25 C 1.53784 * 87.08114 * 25.43683 * 6 5 3 26 26 H 1.08996 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47009 * 299.99933 * 1 2 3 28 28 H 1.09003 * 109.47139 * 59.99547 * 1 2 3 29 29 H 1.09006 * 113.60846 * 334.64830 * 5 3 2 30 30 H 1.08996 * 113.61936 * 203.75191 * 5 3 2 31 31 H 1.08995 * 109.47324 * 306.56000 * 7 6 5 32 32 H 1.09001 * 109.46580 * 66.55545 * 7 6 5 33 33 H 0.96697 * 113.99472 * 179.97438 * 8 7 6 34 34 H 0.97002 * 120.00271 * 114.76656 * 9 6 5 35 35 H 1.08001 * 119.31810 * 359.97438 * 13 12 10 36 36 H 0.97002 * 124.94250 * 0.02562 * 16 15 14 37 37 H 1.08000 * 125.02843 * 179.97438 * 17 16 15 38 38 H 1.08995 * 109.47611 * 225.02769 * 19 18 17 39 39 H 0.96692 * 114.00440 * 300.00456 * 20 19 18 40 40 H 1.48503 * 110.00443 * 58.67620 * 21 19 18 41 41 H 1.48502 * 110.00166 * 179.97438 * 21 19 18 42 42 H 1.09003 * 109.47222 * 263.86739 * 24 23 22 43 43 H 1.09007 * 109.46853 * 23.86610 * 24 23 22 44 44 H 1.08998 * 109.47038 * 143.85936 * 24 23 22 45 45 H 1.09007 * 113.61378 * 89.10986 * 25 6 5 46 46 H 1.08997 * 113.61603 * 220.01601 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 0.3238 5 6 3.3756 1.3719 0.7045 6 6 4.0063 1.0352 -0.6570 7 6 5.2916 1.8132 -0.9462 8 8 5.7169 1.5498 -2.2848 9 7 4.1447 -0.4027 -0.9001 10 6 4.9730 -1.1393 -0.1332 11 8 5.5349 -0.6302 0.8172 12 6 5.1979 -2.5645 -0.4473 13 6 4.4615 -3.1930 -1.4585 14 7 4.6470 -4.4592 -1.7532 15 6 5.5378 -5.2058 -1.1104 16 7 5.9126 -6.5202 -1.2252 17 6 6.8929 -6.8116 -0.3145 18 6 7.1839 -5.7204 0.4100 19 6 8.2045 -5.6209 1.5144 20 8 9.3539 -4.9177 1.0386 21 14 8.7035 -7.3325 2.0548 22 6 6.3141 -4.6459 -0.0748 23 6 6.1485 -3.3044 0.2612 24 6 6.9651 -2.6718 1.3586 25 6 2.7531 1.6511 -1.3014 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.5175 0.5948 1.4556 30 1 3.6305 2.3667 1.0698 31 1 5.1049 2.8805 -0.8275 32 1 6.0698 1.5009 -0.2497 33 1 6.5279 2.0117 -2.5378 34 1 3.6403 -0.8249 -1.6131 35 1 3.7254 -2.6248 -2.0078 36 1 5.5383 -7.1512 -1.8598 37 1 7.3619 -7.7773 -0.1962 38 1 7.7741 -5.0840 2.3596 39 1 9.7890 -5.3393 0.2851 40 1 9.2626 -8.0859 0.9037 41 1 9.7102 -7.2482 3.1432 42 1 6.3954 -2.6828 2.2878 43 1 7.8900 -3.2330 1.4927 44 1 7.2006 -1.6424 1.0888 45 1 2.8379 2.7223 -1.4844 46 1 2.3926 1.0995 -2.1696 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_12890568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:33 Heat of formation + Delta-G solvation = -47.990459 kcal Electronic energy + Delta-G solvation = -31977.579189 eV Core-core repulsion = 27643.099630 eV Total energy + Delta-G solvation = -4334.479559 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86629 -41.76559 -40.04574 -38.68219 -37.95455 -37.75222 -36.56982 -35.08040 -34.20226 -31.93197 -30.96086 -29.05892 -28.69737 -27.29649 -26.82407 -26.47449 -24.91446 -24.10801 -23.24057 -21.85437 -20.69140 -20.33484 -19.24233 -18.82263 -18.24635 -17.79322 -17.57592 -17.50841 -16.90822 -16.66692 -16.63025 -16.37797 -16.06973 -15.94748 -15.74077 -15.47625 -15.29131 -14.95572 -14.71430 -14.63737 -14.09463 -14.01468 -13.74750 -13.65574 -13.63164 -13.31800 -13.30779 -13.19821 -13.04001 -12.69263 -12.45499 -12.14440 -11.90623 -11.80543 -11.51096 -11.19442 -11.15166 -10.90964 -10.51655 -10.47408 -10.25339 -9.99576 -9.60970 -9.12855 -4.83067 -0.32878 -0.08954 1.35966 1.41999 1.62859 1.68081 1.85067 2.05079 2.05922 2.73767 2.77125 3.07283 3.31332 3.44474 3.49981 3.54440 3.63012 3.64135 3.70186 3.72203 3.84443 4.13823 4.14898 4.26947 4.29949 4.37478 4.45030 4.51171 4.52621 4.57278 4.60450 4.64453 4.67465 4.69823 4.73421 4.78483 4.85327 4.90291 4.99331 5.06727 5.08696 5.19269 5.27151 5.38218 5.62598 5.73622 6.21344 6.30631 6.53728 6.59844 6.80973 6.82316 7.23211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.386 6.386 3 C 0.062 3.938 4 H 0.097 0.903 5 C -0.139 4.139 6 C 0.153 3.847 7 C 0.076 3.924 8 O -0.582 6.582 9 N -0.680 5.680 10 C 0.575 3.425 11 O -0.561 6.561 12 C -0.238 4.238 13 C 0.179 3.821 14 N -0.516 5.516 15 C 0.286 3.714 16 N -0.560 5.560 17 C 0.092 3.908 18 C -0.197 4.197 19 C -0.060 4.060 20 O -0.550 6.550 21 Si 0.782 3.218 22 C -0.164 4.164 23 C 0.061 3.939 24 C -0.118 4.118 25 C -0.139 4.139 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.393 0.607 34 H 0.407 0.593 35 H 0.183 0.817 36 H 0.438 0.562 37 H 0.222 0.778 38 H 0.109 0.891 39 H 0.385 0.615 40 H -0.258 1.258 41 H -0.307 1.307 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.125 0.875 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 -1.796 -1.836 4.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.305 6.305 3 C 0.004 3.996 4 H 0.115 0.885 5 C -0.178 4.178 6 C 0.066 3.934 7 C -0.002 4.002 8 O -0.390 6.390 9 N -0.331 5.331 10 C 0.363 3.637 11 O -0.441 6.441 12 C -0.245 4.245 13 C 0.010 3.990 14 N -0.230 5.230 15 C 0.053 3.947 16 N -0.167 5.167 17 C -0.035 4.035 18 C -0.204 4.204 19 C -0.168 4.168 20 O -0.358 6.358 21 Si 0.684 3.316 22 C -0.171 4.171 23 C 0.053 3.947 24 C -0.174 4.174 25 C -0.177 4.177 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.138 0.862 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.242 0.758 34 H 0.244 0.756 35 H 0.199 0.801 36 H 0.279 0.721 37 H 0.239 0.761 38 H 0.126 0.874 39 H 0.234 0.766 40 H -0.183 1.183 41 H -0.235 1.235 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.143 0.857 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.405 -2.708 -1.371 4.561 hybrid contribution 1.049 1.168 -0.767 1.747 sum -2.356 -1.539 -2.138 3.535 Atomic orbital electron populations 1.22948 0.79706 1.03469 1.00858 1.87893 1.20970 1.27065 1.94594 1.23155 0.94489 0.85685 0.96249 0.88474 1.23570 0.94549 1.03520 0.96115 1.21342 0.94154 0.80420 0.97511 1.22462 0.95484 0.98748 0.83544 1.86420 1.48197 1.74466 1.29886 1.45209 1.44541 1.07656 1.35647 1.17879 0.78556 0.85374 0.81842 1.90694 1.50229 1.73566 1.29628 1.20552 1.04561 0.95436 1.03954 1.22812 0.95452 0.88522 0.92179 1.66493 1.19651 1.07037 1.29791 1.18780 0.94474 0.87331 0.94165 1.41590 1.34005 1.07442 1.33635 1.22346 0.90970 1.00456 0.89754 1.20717 1.03308 0.92257 1.04132 1.24773 0.85030 1.10792 0.96179 1.86579 1.42769 1.53074 1.53408 0.94044 0.85331 0.73847 0.78355 1.19760 1.02157 0.94205 1.00991 1.20046 0.90970 0.90914 0.92788 1.21061 0.99091 1.01670 0.95539 1.23757 0.92982 1.02960 0.97967 0.89251 0.93410 0.92757 0.92068 0.86163 0.90297 0.94593 0.75817 0.75588 0.80064 0.72080 0.76145 0.87358 0.76565 1.18292 1.23528 0.90533 0.89945 0.90267 0.85733 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.39 -1.18 10.14 -148.98 -1.51 -2.69 16 3 C 0.06 -0.03 4.37 31.12 0.14 0.11 16 4 H 0.10 -0.41 7.87 -2.39 -0.02 -0.43 16 5 C -0.14 -0.35 6.78 31.12 0.21 -0.14 16 6 C 0.15 0.43 0.75 4.13 0.00 0.43 16 7 C 0.08 0.20 6.27 71.98 0.45 0.65 16 8 O -0.58 -1.88 13.54 -148.98 -2.02 -3.90 16 9 N -0.68 -3.62 4.49 -423.54 -1.90 -5.52 16 10 C 0.58 6.04 7.27 86.73 0.63 6.67 16 11 O -0.56 -8.47 11.39 -3.96 -0.05 -8.52 16 12 C -0.24 -2.35 5.89 -19.99 -0.12 -2.47 16 13 C 0.18 1.23 10.68 85.20 0.91 2.14 16 14 N -0.52 -4.35 10.37 -191.75 -1.99 -6.34 16 15 C 0.29 1.94 8.42 134.02 1.13 3.07 16 16 N -0.56 0.76 6.04 -192.25 -1.16 -0.40 16 17 C 0.09 -0.39 10.44 82.97 0.87 0.48 16 18 C -0.20 -0.30 5.57 -18.64 -0.10 -0.40 16 19 C -0.06 -0.03 1.88 71.24 0.13 0.11 16 20 O -0.55 -2.00 11.67 -148.98 -1.74 -3.74 16 21 Si 0.78 -3.51 30.83 68.60 2.11 -1.39 16 22 C -0.16 -1.30 6.16 -20.19 -0.12 -1.43 16 23 C 0.06 0.66 5.98 -19.25 -0.12 0.54 16 24 C -0.12 -1.26 8.46 71.24 0.60 -0.65 16 25 C -0.14 0.28 7.21 31.12 0.22 0.50 16 26 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.06 0.57 7.19 -2.38 -0.02 0.56 16 30 H 0.12 -0.22 8.10 -2.39 -0.02 -0.24 16 31 H 0.08 -0.20 8.09 -2.39 -0.02 -0.22 16 32 H 0.04 0.27 7.17 -2.39 -0.02 0.25 16 33 H 0.39 -1.59 9.12 -74.06 -0.68 -2.26 16 34 H 0.41 0.93 6.73 -92.71 -0.62 0.31 16 35 H 0.18 0.16 6.41 -2.91 -0.02 0.15 16 36 H 0.44 -3.04 8.96 -92.71 -0.83 -3.87 16 37 H 0.22 -2.78 6.28 -2.91 -0.02 -2.80 16 38 H 0.11 0.18 7.13 -2.39 -0.02 0.17 16 39 H 0.39 -1.06 8.70 -74.06 -0.64 -1.70 16 40 H -0.26 1.12 7.00 99.48 0.70 1.82 16 41 H -0.31 -1.38 7.11 99.48 0.71 -0.68 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.80 4.78 -2.38 -0.01 0.79 16 44 H 0.08 1.12 5.96 -2.39 -0.01 1.11 16 45 H 0.12 -0.74 8.06 -2.38 -0.02 -0.76 16 46 H 0.08 -0.13 8.09 -2.39 -0.02 -0.15 16 Total: 0.00 -25.72 370.75 -3.84 -29.56 By element: Atomic # 1 Polarization: -6.20 SS G_CDS: -1.66 Total: -7.86 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.07 Total: 10.79 kcal Atomic # 7 Polarization: -7.21 SS G_CDS: -5.05 Total: -12.26 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -5.31 Total: -18.84 kcal Atomic # 14 Polarization: -3.51 SS G_CDS: 2.11 Total: -1.39 kcal Total: -25.72 -3.84 -29.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_12890568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.432 kcal (2) G-P(sol) polarization free energy of solvation -25.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds