Wall clock time and date at job start Tue Mar 9 2021 12:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42904 * 113.99419 * 2 1 4 4 H 1.08992 * 112.85168 * 18.80381 * 3 2 1 5 5 C 1.53785 * 113.60831 * 150.00131 * 3 2 1 6 6 C 1.53778 * 87.08056 * 89.11323 * 5 3 2 7 7 C 1.53000 * 113.61428 * 140.06534 * 6 5 3 8 8 O 1.42902 * 109.47394 * 186.48207 * 7 6 5 9 9 N 1.46501 * 113.61671 * 270.87922 * 6 5 3 10 10 C 1.34782 * 119.99849 * 294.19626 * 9 6 5 11 11 O 1.21271 * 120.00146 * 355.07365 * 10 9 6 12 12 C 1.50698 * 119.99832 * 175.07419 * 10 9 6 13 13 O 1.42901 * 109.47202 * 180.02562 * 12 10 9 14 14 C 1.35902 * 116.99949 * 179.97438 * 13 12 10 15 15 C 1.38733 * 120.05625 * 359.72208 * 14 13 12 16 16 C 1.38147 * 119.93923 * 179.69839 * 15 14 13 17 17 C 1.38265 * 120.05829 * 0.60065 * 16 15 14 18 18 C 1.50703 * 119.94617 * 179.70150 * 17 16 15 19 19 O 1.42894 * 109.47044 * 119.97695 * 18 17 16 20 20 Si 1.86304 * 109.46841 * 359.97438 * 18 17 16 21 21 C 1.38271 * 120.11112 * 359.67409 * 17 16 15 22 22 C 1.38147 * 120.05511 * 0.02562 * 21 17 16 23 23 C 1.53777 * 87.17684 * 25.47301 * 6 5 3 24 24 H 1.08992 * 109.47020 * 60.00294 * 1 2 3 25 25 H 1.08998 * 109.46920 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46724 * 300.00324 * 1 2 3 27 27 H 1.09000 * 113.61387 * 334.56261 * 5 3 2 28 28 H 1.08997 * 113.61190 * 203.66144 * 5 3 2 29 29 H 1.09003 * 109.46975 * 306.47746 * 7 6 5 30 30 H 1.09000 * 109.47539 * 66.48442 * 7 6 5 31 31 H 0.96696 * 114.00986 * 179.97438 * 8 7 6 32 32 H 0.97005 * 120.00319 * 114.18945 * 9 6 5 33 33 H 1.08996 * 109.47305 * 59.99324 * 12 10 9 34 34 H 1.09008 * 109.47057 * 299.99996 * 12 10 9 35 35 H 1.08000 * 120.02998 * 359.97438 * 15 14 13 36 36 H 1.08001 * 119.97229 * 180.32222 * 16 15 14 37 37 H 1.09000 * 109.46746 * 239.97573 * 18 17 16 38 38 H 0.96700 * 114.00222 * 299.99618 * 19 18 17 39 39 H 1.48499 * 109.99666 * 180.02562 * 20 18 17 40 40 H 1.48501 * 109.99727 * 301.32062 * 20 18 17 41 41 H 1.07992 * 119.97438 * 180.02562 * 21 17 16 42 42 H 1.07994 * 120.02552 * 180.02562 * 22 21 17 43 43 H 1.08995 * 113.61588 * 89.07123 * 23 6 5 44 44 H 1.08999 * 113.61562 * 219.97767 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3137 2.0789 0.3237 5 6 3.3756 1.3720 0.7045 6 6 4.0061 1.0331 -0.6565 7 6 5.2920 1.8098 -0.9465 8 8 5.7181 1.5432 -2.2843 9 7 4.1437 -0.4053 -0.8977 10 6 4.9802 -1.1392 -0.1372 11 8 5.6850 -0.5958 0.6866 12 6 5.0397 -2.6350 -0.3107 13 8 5.9929 -3.1828 0.6022 14 6 6.1691 -4.5301 0.5754 15 6 5.4355 -5.3094 -0.3073 16 6 5.6211 -6.6780 -0.3369 17 6 6.5280 -7.2726 0.5208 18 6 6.7236 -8.7666 0.4911 19 8 8.0843 -9.0626 0.1706 20 14 5.6052 -9.5137 -0.7982 21 6 7.2563 -6.4987 1.4055 22 6 7.0789 -5.1290 1.4347 23 6 2.7549 1.6494 -1.3040 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.5170 0.5958 1.4567 28 1 3.6311 2.3671 1.0685 29 1 5.1056 2.8775 -0.8306 30 1 6.0696 1.4988 -0.2489 31 1 6.5295 2.0039 -2.5379 32 1 3.6328 -0.8296 -1.6047 33 1 5.3373 -2.8707 -1.3324 34 1 4.0575 -3.0633 -0.1104 35 1 4.7232 -4.8460 -0.9739 36 1 5.0540 -7.2846 -1.0275 37 1 6.4813 -9.1842 1.4683 38 1 8.3697 -8.7204 -0.6876 39 1 5.7881 -10.9869 -0.8370 40 1 4.1892 -9.1859 -0.4937 41 1 7.9643 -6.9654 2.0741 42 1 7.6482 -4.5250 2.1255 43 1 2.8410 2.7203 -1.4882 44 1 2.3956 1.0971 -2.1723 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_2989410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:36 Heat of formation + Delta-G solvation = -129.709275 kcal Electronic energy + Delta-G solvation = -27694.205461 eV Core-core repulsion = 23580.341838 eV Total energy + Delta-G solvation = -4113.863623 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92075 -41.26405 -39.85490 -38.88797 -37.86826 -37.10624 -36.56365 -34.21007 -32.38968 -31.73128 -29.88415 -28.59122 -27.30425 -26.87113 -26.21862 -24.24223 -23.45013 -22.41639 -21.68888 -20.38626 -19.45670 -18.53783 -18.28304 -18.08133 -17.65613 -17.33764 -16.89033 -16.87562 -16.61495 -16.39181 -16.03389 -15.95990 -15.64032 -15.58554 -15.25167 -14.83271 -14.68185 -14.59430 -14.32745 -13.76707 -13.71207 -13.56889 -13.46655 -13.33733 -13.27209 -12.73499 -12.26110 -12.18711 -12.09304 -12.06234 -11.94966 -11.74434 -11.52908 -11.20449 -10.62979 -10.54930 -10.40827 -10.06500 -10.04328 -9.23996 -4.98664 0.25999 0.29033 1.34282 1.44918 1.50386 1.64676 1.98370 2.52997 2.64341 2.72749 3.03879 3.45732 3.49584 3.56039 3.59150 3.71165 3.77266 3.82171 3.94077 4.00537 4.07209 4.14020 4.29135 4.34670 4.40486 4.43319 4.50358 4.50732 4.56457 4.61726 4.64308 4.65836 4.69926 4.81971 4.89558 4.95556 4.98815 5.03092 5.14242 5.24294 5.47957 5.51750 5.68636 6.24506 6.27088 6.49291 6.79020 6.79742 7.15741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.385 6.385 3 C 0.064 3.936 4 H 0.097 0.903 5 C -0.144 4.144 6 C 0.153 3.847 7 C 0.074 3.926 8 O -0.581 6.581 9 N -0.677 5.677 10 C 0.518 3.482 11 O -0.566 6.566 12 C 0.040 3.960 13 O -0.318 6.318 14 C 0.119 3.881 15 C -0.202 4.202 16 C -0.075 4.075 17 C -0.160 4.160 18 C -0.073 4.073 19 O -0.558 6.558 20 Si 0.781 3.219 21 C -0.060 4.060 22 C -0.165 4.165 23 C -0.136 4.136 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.394 0.606 32 H 0.416 0.584 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.103 0.897 38 H 0.395 0.605 39 H -0.302 1.302 40 H -0.282 1.282 41 H 0.135 0.865 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.386 3.386 -6.584 9.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.304 6.304 3 C 0.006 3.994 4 H 0.115 0.885 5 C -0.182 4.182 6 C 0.066 3.934 7 C -0.005 4.005 8 O -0.389 6.389 9 N -0.329 5.329 10 C 0.304 3.696 11 O -0.444 6.444 12 C -0.038 4.038 13 O -0.231 6.231 14 C 0.074 3.926 15 C -0.220 4.220 16 C -0.093 4.093 17 C -0.161 4.161 18 C -0.182 4.182 19 O -0.366 6.366 20 Si 0.687 3.313 21 C -0.078 4.078 22 C -0.184 4.184 23 C -0.174 4.174 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.138 0.862 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.243 0.757 32 H 0.253 0.747 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.178 0.822 36 H 0.170 0.830 37 H 0.121 0.879 38 H 0.245 0.755 39 H -0.230 1.230 40 H -0.209 1.209 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.908 2.552 -5.450 8.433 hybrid contribution 0.360 0.474 0.688 0.910 sum -5.548 3.025 -4.762 7.912 Atomic orbital electron populations 1.22961 0.79567 1.03652 1.00831 1.87861 1.21055 1.26892 1.94591 1.23195 0.94264 0.85820 0.96150 0.88483 1.23609 0.95056 1.03477 0.96048 1.21355 0.94214 0.80512 0.97349 1.22475 0.95616 0.98644 0.83721 1.86386 1.48219 1.74456 1.29791 1.45130 1.44106 1.07516 1.36183 1.20367 0.79427 0.89089 0.80740 1.90708 1.43049 1.73713 1.36975 1.22659 0.94796 0.90749 0.95609 1.86122 1.59033 1.19355 1.58575 1.19252 0.95712 0.81806 0.95819 1.21485 1.03563 0.94694 1.02248 1.21057 0.96496 0.94362 0.97360 1.20367 0.99972 0.96535 0.99231 1.25179 0.91254 0.93656 1.08140 1.86459 1.26417 1.80154 1.43572 0.93734 0.75343 0.76799 0.85407 1.20907 0.97762 0.91823 0.97277 1.20616 1.00980 0.95212 1.01585 1.23784 0.92633 1.02976 0.97973 0.92720 0.88911 0.93613 0.92502 0.86234 0.90553 0.94639 0.75712 0.74701 0.86070 0.86451 0.82229 0.82967 0.87905 0.75517 1.23034 1.20872 0.84756 0.85529 0.85858 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.12 10.85 113.37 1.23 1.11 16 2 O -0.39 0.06 10.13 -148.98 -1.51 -1.45 16 3 C 0.06 -0.17 4.38 31.22 0.14 -0.03 16 4 H 0.10 -0.58 7.87 -2.39 -0.02 -0.60 16 5 C -0.14 -0.15 6.86 31.12 0.21 0.07 16 6 C 0.15 0.10 0.75 4.13 0.00 0.11 16 7 C 0.07 0.12 6.24 71.98 0.45 0.57 16 8 O -0.58 -0.80 13.54 -148.98 -2.02 -2.82 16 9 N -0.68 -0.77 4.54 -420.55 -1.91 -2.67 16 10 C 0.52 3.36 7.40 87.66 0.65 4.01 16 11 O -0.57 -8.96 14.49 16.04 0.23 -8.73 16 12 C 0.04 0.03 5.22 71.24 0.37 0.40 16 13 O -0.32 -2.72 9.67 -73.41 -0.71 -3.43 16 14 C 0.12 0.66 6.69 22.51 0.15 0.81 16 15 C -0.20 0.06 9.04 22.37 0.20 0.26 16 16 C -0.08 0.10 8.66 22.25 0.19 0.29 16 17 C -0.16 -0.22 5.39 -19.85 -0.11 -0.32 16 18 C -0.07 -0.02 2.82 71.24 0.20 0.18 16 19 O -0.56 -0.68 12.77 -148.98 -1.90 -2.58 16 20 Si 0.78 -1.93 29.78 68.60 2.04 0.11 16 21 C -0.06 -0.24 9.60 22.26 0.21 -0.03 16 22 C -0.17 -1.06 9.99 22.37 0.22 -0.83 16 23 C -0.14 0.59 7.22 31.21 0.23 0.82 16 24 H 0.05 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.06 0.44 7.54 -2.39 -0.02 0.42 16 28 H 0.12 -0.32 8.10 -2.39 -0.02 -0.34 16 29 H 0.08 -0.25 8.08 -2.39 -0.02 -0.27 16 30 H 0.04 0.27 6.81 -2.39 -0.02 0.25 16 31 H 0.39 -2.21 9.12 -74.06 -0.68 -2.88 16 32 H 0.42 -1.55 8.66 -92.70 -0.80 -2.36 16 33 H 0.12 -0.64 7.68 -2.39 -0.02 -0.66 16 34 H 0.12 -0.49 7.65 -2.38 -0.02 -0.51 16 35 H 0.16 -1.07 6.30 -2.91 -0.02 -1.09 16 36 H 0.15 -0.99 4.87 -2.91 -0.01 -1.01 16 37 H 0.10 0.19 7.96 -2.39 -0.02 0.17 16 38 H 0.39 -2.72 8.70 -74.06 -0.64 -3.36 16 39 H -0.30 -1.63 7.11 99.48 0.71 -0.92 16 40 H -0.28 -0.41 7.11 99.48 0.71 0.30 16 41 H 0.13 0.40 8.06 -2.91 -0.02 0.37 16 42 H 0.13 0.86 8.06 -2.91 -0.02 0.83 16 43 H 0.12 -0.95 8.06 -2.39 -0.02 -0.97 16 44 H 0.09 -0.40 8.09 -2.39 -0.02 -0.42 16 Total: 0.00 -25.98 366.26 -2.45 -28.43 By element: Atomic # 1 Polarization: -13.24 SS G_CDS: -1.03 Total: -14.27 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 4.35 Total: 7.41 kcal Atomic # 7 Polarization: -0.77 SS G_CDS: -1.91 Total: -2.67 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -5.91 Total: -19.00 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: 2.04 Total: 0.11 kcal Total: -25.98 -2.45 -28.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_2989410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.282 kcal (2) G-P(sol) polarization free energy of solvation -25.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds