Wall clock time and date at job start Tue Mar 9 2021 12:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00012 * 2 1 4 4 H 1.09001 * 112.84575 * 339.67150 * 3 2 1 5 5 C 1.53778 * 113.68745 * 110.93147 * 3 2 1 6 6 C 1.53781 * 87.07778 * 89.13228 * 5 3 2 7 7 C 1.52999 * 113.61713 * 139.97932 * 6 5 3 8 8 O 1.42902 * 109.47401 * 84.58811 * 7 6 5 9 9 N 1.46495 * 113.61369 * 270.87990 * 6 5 3 10 10 C 1.34780 * 120.00215 * 161.09563 * 9 6 5 11 11 O 1.21282 * 119.99728 * 4.99070 * 10 9 6 12 12 C 1.50700 * 119.99977 * 184.98843 * 10 9 6 13 13 C 1.53000 * 109.46970 * 179.97438 * 12 10 9 14 14 O 1.42901 * 109.47160 * 180.02562 * 13 12 10 15 15 C 1.35901 * 117.00080 * 180.02562 * 14 13 12 16 16 C 1.38708 * 120.05752 * 180.02562 * 15 14 13 17 17 C 1.38165 * 119.94693 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.97362 * 180.02562 * 17 16 15 19 19 O 1.42894 * 109.47037 * 299.99404 * 18 17 16 20 20 Si 1.86306 * 109.47190 * 179.97438 * 18 17 16 21 21 C 1.38244 * 120.05439 * 359.97438 * 17 16 15 22 22 C 1.38289 * 120.11069 * 359.97438 * 21 17 16 23 23 C 1.38117 * 120.05629 * 359.75920 * 22 21 17 24 24 C 1.53773 * 113.61586 * 208.46977 * 3 2 1 25 25 H 1.09005 * 109.47169 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47632 * 299.99873 * 1 2 3 27 27 H 1.09003 * 109.47586 * 59.99926 * 1 2 3 28 28 H 1.09006 * 113.61416 * 203.67406 * 5 3 2 29 29 H 1.08993 * 113.62231 * 334.58138 * 5 3 2 30 30 H 1.08999 * 109.47617 * 204.58624 * 7 6 5 31 31 H 1.09002 * 109.47026 * 324.59360 * 7 6 5 32 32 H 0.96701 * 114.00435 * 180.02562 * 8 7 6 33 33 H 0.97009 * 120.00127 * 341.09942 * 9 6 5 34 34 H 1.08997 * 109.47704 * 299.99946 * 12 10 9 35 35 H 1.09005 * 109.47027 * 60.00777 * 12 10 9 36 36 H 1.09007 * 109.47370 * 300.00303 * 13 12 10 37 37 H 1.09004 * 109.47316 * 60.00303 * 13 12 10 38 38 H 1.08005 * 120.02790 * 0.02562 * 16 15 14 39 39 H 1.09002 * 109.47284 * 59.99811 * 18 17 16 40 40 H 0.96699 * 114.00430 * 180.02562 * 19 18 17 41 41 H 1.48503 * 109.99674 * 298.68136 * 20 18 17 42 42 H 1.48497 * 109.99888 * 59.99497 * 20 18 17 43 43 H 1.07998 * 119.94836 * 180.02562 * 21 17 16 44 44 H 1.07997 * 119.97109 * 180.02562 * 22 21 17 45 45 H 1.07998 * 120.02757 * 180.27929 * 23 22 21 46 46 H 1.08999 * 113.61318 * 25.35435 * 24 3 2 47 47 H 1.08998 * 113.61436 * 156.24929 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3218 2.0752 -0.3490 5 6 2.7211 1.6652 1.3153 6 6 3.9895 1.0427 0.7084 7 6 5.2664 1.8254 1.0211 8 8 5.7704 1.4246 2.2969 9 7 4.1219 -0.3925 0.9703 10 6 4.9438 -1.1433 0.2105 11 8 5.6415 -0.6170 -0.6304 12 6 4.9957 -2.6367 0.4057 13 6 5.9998 -3.2447 -0.5757 14 8 6.0486 -4.6609 -0.3910 15 6 6.8983 -5.3584 -1.1900 16 6 6.9959 -6.7363 -1.0650 17 6 7.8609 -7.4431 -1.8782 18 6 7.9670 -8.9403 -1.7433 19 8 8.3903 -9.2705 -0.4190 20 14 9.2083 -9.5882 -2.9722 21 6 8.6285 -6.7781 -2.8161 22 6 8.5323 -5.4044 -2.9434 23 6 7.6650 -4.6940 -2.1367 24 6 3.3923 1.3645 -0.6716 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.8015 2.7384 1.4888 29 1 2.3396 1.1231 2.1804 30 1 6.0144 1.6218 0.2548 31 1 5.0438 2.8923 1.0373 32 1 6.5808 1.8815 2.5609 33 1 3.6180 -0.8026 1.6907 34 1 5.3049 -2.8592 1.4269 35 1 4.0083 -3.0614 0.2243 36 1 5.6901 -3.0223 -1.5969 37 1 6.9873 -2.8201 -0.3948 38 1 6.3962 -7.2564 -0.3327 39 1 6.9943 -9.3924 -1.9372 40 1 8.4806 -10.2200 -0.2602 41 1 8.7630 -9.2791 -4.3548 42 1 10.5389 -8.9794 -2.7192 43 1 9.3038 -7.3323 -3.4511 44 1 9.1326 -4.8872 -3.6772 45 1 7.5869 -3.6218 -2.2396 46 1 3.5524 0.5794 -1.4106 47 1 3.6561 2.3553 -1.0414 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_4549614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:41 Heat of formation + Delta-G solvation = -136.828705 kcal Electronic energy + Delta-G solvation = -29378.894037 eV Core-core repulsion = 25109.184073 eV Total energy + Delta-G solvation = -4269.709964 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.87214 -41.38022 -39.89445 -39.07718 -37.92262 -37.33992 -36.59582 -34.24042 -33.11703 -32.70720 -30.97137 -28.97070 -27.34169 -27.11058 -26.88237 -25.58670 -23.84178 -23.39790 -22.11477 -21.41820 -20.32685 -19.26193 -18.40867 -18.32057 -17.99536 -17.69481 -17.48301 -17.38509 -17.33981 -16.77220 -16.61745 -16.09559 -15.99271 -15.90478 -15.47276 -15.27348 -14.99221 -14.68430 -14.64902 -14.41750 -14.20326 -14.08198 -13.67604 -13.50490 -13.35870 -13.24907 -13.04112 -12.85954 -12.74350 -12.42042 -12.20663 -12.17348 -11.97328 -11.92193 -11.82678 -11.56023 -11.20917 -10.67358 -10.56265 -10.43766 -10.00514 -9.98728 -9.43704 -4.93902 0.04079 0.20190 1.27640 1.55679 1.64503 1.65428 1.98261 2.38084 2.48294 2.70409 3.06086 3.35625 3.43960 3.50436 3.56998 3.65786 3.72137 3.77106 3.80642 3.82520 3.95104 4.11634 4.12512 4.14939 4.27716 4.34453 4.37530 4.43786 4.48580 4.52878 4.54120 4.60798 4.62225 4.62464 4.66826 4.70440 4.79901 4.82543 4.87514 4.97799 5.02434 5.07595 5.18505 5.26130 5.51929 5.55714 6.19909 6.25133 6.49589 6.77686 6.90588 7.18466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.386 6.386 3 C 0.063 3.937 4 H 0.096 0.904 5 C -0.142 4.142 6 C 0.150 3.850 7 C 0.077 3.923 8 O -0.583 6.583 9 N -0.680 5.680 10 C 0.526 3.474 11 O -0.578 6.578 12 C -0.132 4.132 13 C 0.078 3.922 14 O -0.321 6.321 15 C 0.123 3.877 16 C -0.137 4.137 17 C -0.051 4.051 18 C -0.084 4.084 19 O -0.564 6.564 20 Si 0.786 3.214 21 C -0.180 4.180 22 C -0.075 4.075 23 C -0.211 4.211 24 C -0.140 4.140 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.393 0.607 33 H 0.413 0.587 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.139 0.861 39 H 0.097 0.903 40 H 0.405 0.595 41 H -0.287 1.287 42 H -0.298 1.298 43 H 0.123 0.877 44 H 0.150 0.850 45 H 0.142 0.858 46 H 0.059 0.941 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 0.303 1.595 4.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.305 6.305 3 C 0.005 3.995 4 H 0.114 0.886 5 C -0.180 4.180 6 C 0.063 3.937 7 C -0.002 4.002 8 O -0.390 6.390 9 N -0.330 5.330 10 C 0.314 3.686 11 O -0.459 6.459 12 C -0.172 4.172 13 C 0.003 3.997 14 O -0.235 6.235 15 C 0.078 3.922 16 C -0.155 4.155 17 C -0.051 4.051 18 C -0.193 4.193 19 O -0.374 6.374 20 Si 0.692 3.308 21 C -0.198 4.198 22 C -0.093 4.093 23 C -0.230 4.230 24 C -0.178 4.178 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.142 0.858 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.242 0.758 33 H 0.249 0.751 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.157 0.843 39 H 0.115 0.885 40 H 0.256 0.744 41 H -0.214 1.214 42 H -0.226 1.226 43 H 0.140 0.860 44 H 0.168 0.832 45 H 0.159 0.841 46 H 0.078 0.922 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.911 0.890 0.578 4.052 hybrid contribution 0.000 1.136 0.212 1.156 sum -3.911 2.026 0.790 4.474 Atomic orbital electron populations 1.22953 0.79618 1.03594 1.00832 1.87874 1.21024 1.26947 1.94607 1.23131 0.94386 0.85749 0.96260 0.88567 1.23808 0.93141 1.02899 0.98109 1.21378 0.94115 0.81059 0.97151 1.22492 0.94923 0.97772 0.85029 1.86408 1.47314 1.69253 1.36040 1.45251 1.45094 1.07500 1.35141 1.20391 0.78706 0.89154 0.80394 1.90682 1.43564 1.74993 1.36639 1.21401 1.02435 0.90890 1.02468 1.22416 1.00142 0.77139 1.00001 1.85964 1.59045 1.21183 1.57262 1.19156 0.90514 0.91803 0.90737 1.20375 1.02228 0.90761 1.02180 1.19543 0.95096 0.95367 0.95112 1.24938 1.08151 0.92662 0.93538 1.86446 1.90550 1.31767 1.28605 0.94407 0.74532 0.88159 0.73736 1.20982 1.01875 0.95549 1.01399 1.21159 0.96727 0.93415 0.98034 1.21521 1.00792 1.01390 0.99257 1.23569 0.94739 1.03549 0.95962 0.89032 0.92848 0.93439 0.85788 0.89856 0.94454 0.90565 0.75800 0.75084 0.86238 0.86117 0.91560 0.91736 0.84320 0.88509 0.74370 1.21424 1.22552 0.85995 0.83231 0.84070 0.92228 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.09 10.85 113.37 1.23 1.14 16 2 O -0.39 -0.46 10.14 -148.98 -1.51 -1.97 16 3 C 0.06 -0.12 4.36 31.12 0.14 0.02 16 4 H 0.10 -0.51 7.88 -2.39 -0.02 -0.53 16 5 C -0.14 0.49 7.20 31.12 0.22 0.72 16 6 C 0.15 0.17 0.81 4.13 0.00 0.17 16 7 C 0.08 0.11 6.28 71.98 0.45 0.56 16 8 O -0.58 -1.34 13.38 -148.98 -1.99 -3.33 16 9 N -0.68 -1.55 4.37 -420.56 -1.84 -3.39 16 10 C 0.53 3.12 7.31 87.66 0.64 3.77 16 11 O -0.58 -7.28 14.10 -3.04 -0.04 -7.32 16 12 C -0.13 -0.24 6.07 29.85 0.18 -0.06 16 13 C 0.08 0.46 4.03 71.98 0.29 0.75 16 14 O -0.32 -2.84 10.14 -92.43 -0.94 -3.78 16 15 C 0.12 1.25 6.69 22.51 0.15 1.40 16 16 C -0.14 -1.33 9.55 22.36 0.21 -1.12 16 17 C -0.05 -0.43 5.42 -19.88 -0.11 -0.54 16 18 C -0.08 -0.15 2.81 71.24 0.20 0.05 16 19 O -0.56 -1.07 12.74 -148.98 -1.90 -2.97 16 20 Si 0.79 -0.46 29.79 68.60 2.04 1.58 16 21 C -0.18 -1.55 8.67 22.28 0.19 -1.35 16 22 C -0.08 -0.55 10.04 22.25 0.22 -0.33 16 23 C -0.21 -1.78 9.04 22.37 0.20 -1.58 16 24 C -0.14 -0.15 6.82 31.12 0.21 0.07 16 25 H 0.09 -0.41 8.14 -2.38 -0.02 -0.43 16 26 H 0.05 -0.29 8.14 -2.38 -0.02 -0.31 16 27 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.12 -0.90 7.93 -2.38 -0.02 -0.92 16 29 H 0.08 -0.25 8.10 -2.39 -0.02 -0.27 16 30 H 0.04 0.23 7.22 -2.39 -0.02 0.21 16 31 H 0.08 -0.27 7.90 -2.39 -0.02 -0.29 16 32 H 0.39 -1.90 9.12 -74.06 -0.68 -2.58 16 33 H 0.41 -0.41 8.68 -92.70 -0.80 -1.21 16 34 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.12 -0.11 8.14 -2.38 -0.02 -0.13 16 36 H 0.07 0.45 7.61 -2.38 -0.02 0.43 16 37 H 0.06 0.46 7.63 -2.39 -0.02 0.44 16 38 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 39 H 0.10 -0.23 7.96 -2.39 -0.02 -0.25 16 40 H 0.40 -3.78 8.74 -74.06 -0.65 -4.43 16 41 H -0.29 -1.30 7.11 99.48 0.71 -0.59 16 42 H -0.30 -2.12 7.11 99.48 0.71 -1.41 16 43 H 0.12 0.84 4.87 -2.91 -0.01 0.83 16 44 H 0.15 0.34 8.06 -2.91 -0.02 0.32 16 45 H 0.14 0.86 6.30 -2.91 -0.02 0.85 16 46 H 0.06 0.43 7.36 -2.39 -0.02 0.41 16 47 H 0.12 -0.34 8.10 -2.39 -0.02 -0.36 16 Total: 0.00 -24.19 387.05 -2.80 -27.00 By element: Atomic # 1 Polarization: -8.40 SS G_CDS: -1.08 Total: -9.48 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 4.45 Total: 3.66 kcal Atomic # 7 Polarization: -1.55 SS G_CDS: -1.84 Total: -3.39 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -6.38 Total: -19.37 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: 2.04 Total: 1.58 kcal Total: -24.19 -2.80 -27.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_4549614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.833 kcal (2) G-P(sol) polarization free energy of solvation -24.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds