Wall clock time and date at job start Tue Mar 9 2021 12:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99826 * 2 1 4 4 H 1.08999 * 112.91314 * 18.74819 * 3 2 1 5 5 C 1.53778 * 113.61605 * 149.99961 * 3 2 1 6 6 C 1.53780 * 87.17458 * 139.93775 * 5 3 2 7 7 C 1.52998 * 113.61681 * 89.15883 * 6 5 3 8 8 O 1.42900 * 109.47506 * 178.43460 * 7 6 5 9 9 N 1.46508 * 113.61618 * 220.06393 * 6 5 3 10 10 C 1.34779 * 119.99687 * 295.14170 * 9 6 5 11 11 O 1.21700 * 120.00130 * 5.02951 * 10 9 6 12 12 C 1.46578 * 119.99850 * 185.02498 * 10 9 6 13 13 C 1.36652 * 125.45818 * 179.97438 * 12 10 9 14 14 C 1.37469 * 113.29575 * 180.02562 * 13 12 10 15 15 C 1.50698 * 122.45050 * 179.97438 * 14 13 12 16 16 C 1.33821 * 115.10443 * 359.97438 * 14 13 12 17 17 C 1.50697 * 124.52633 * 180.02562 * 16 14 13 18 18 O 1.42901 * 109.46831 * 30.00280 * 17 16 14 19 19 Si 1.86298 * 109.47310 * 150.00313 * 17 16 14 20 20 S 1.70621 * 110.95286 * 359.73017 * 16 14 13 21 21 C 1.53784 * 113.61281 * 247.49787 * 3 2 1 22 22 H 1.08999 * 109.47014 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47080 * 300.00263 * 1 2 3 24 24 H 1.08996 * 109.47074 * 60.00176 * 1 2 3 25 25 H 1.08997 * 113.62027 * 254.52694 * 5 3 2 26 26 H 1.09000 * 113.61518 * 25.34940 * 5 3 2 27 27 H 1.08999 * 109.47357 * 298.43831 * 7 6 5 28 28 H 1.09003 * 109.46549 * 58.43609 * 7 6 5 29 29 H 0.96703 * 114.00003 * 179.97438 * 8 7 6 30 30 H 0.96999 * 120.00174 * 115.13969 * 9 6 5 31 31 H 1.07994 * 123.35103 * 359.97438 * 13 12 10 32 32 H 1.09006 * 109.47117 * 90.01825 * 15 14 13 33 33 H 1.09000 * 109.47244 * 210.02107 * 15 14 13 34 34 H 1.09000 * 109.47202 * 330.02238 * 15 14 13 35 35 H 1.08995 * 109.47577 * 270.00532 * 17 16 14 36 36 H 0.96701 * 114.00175 * 60.00064 * 18 17 16 37 37 H 1.48499 * 110.00094 * 180.02562 * 19 17 16 38 38 H 1.48500 * 109.99745 * 301.31895 * 19 17 16 39 39 H 1.08999 * 113.61487 * 334.56487 * 21 3 2 40 40 H 1.08994 * 113.61529 * 105.38867 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0798 0.3227 5 6 3.3755 1.3719 0.7045 6 6 3.8252 2.3175 -0.4218 7 6 3.5461 3.7934 -0.1311 8 8 4.0296 4.5918 -1.2131 9 7 5.1960 2.0756 -0.8788 10 6 6.2317 2.2808 -0.0411 11 8 6.0250 2.5783 1.1207 12 6 7.6072 2.1456 -0.5295 13 6 8.7357 2.3280 0.2192 14 6 9.8966 2.1381 -0.4921 15 6 11.2605 2.2874 0.1313 16 6 9.7271 1.8111 -1.7786 17 6 10.8505 1.5546 -2.7498 18 8 11.9782 1.0303 -2.0460 19 14 10.2930 0.3249 -4.0335 20 16 8.0693 1.7152 -2.1705 21 6 2.7534 1.6488 -1.3018 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 3.3384 1.8472 1.6847 26 1 3.9082 0.4210 0.7150 27 1 2.4726 3.9450 -0.0190 28 1 4.0522 4.0843 0.7895 29 1 3.8857 5.5410 -1.0965 30 1 5.3582 1.7677 -1.7843 31 1 8.7174 2.5955 1.2654 32 1 11.5823 1.3275 0.5354 33 1 11.9713 2.6199 -0.6252 34 1 11.2143 3.0227 0.9346 35 1 11.1290 2.4884 -3.2381 36 1 11.8027 0.1978 -1.5864 37 1 11.3922 0.0629 -4.9971 38 1 9.8804 -0.9420 -3.3778 39 1 3.1167 0.7740 -1.8410 40 1 2.2134 2.3465 -1.9418 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18341582_6739946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:34 Heat of formation + Delta-G solvation = -93.988611 kcal Electronic energy + Delta-G solvation = -24393.709755 eV Core-core repulsion = 20689.229535 eV Total energy + Delta-G solvation = -3704.480220 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72270 -40.27331 -39.45227 -38.00102 -37.36296 -36.64856 -34.23937 -32.00164 -30.23616 -28.79535 -27.33981 -26.89048 -26.52646 -24.74675 -23.52761 -21.60608 -20.37924 -19.92029 -19.33760 -18.62417 -18.05313 -17.62505 -17.26096 -16.80800 -16.57117 -16.33144 -16.11845 -15.93711 -15.77541 -15.35056 -15.12957 -14.79193 -14.50415 -14.36256 -13.89148 -13.71863 -13.48738 -13.45670 -13.15257 -13.08331 -12.92084 -12.71278 -12.54972 -12.32474 -12.21322 -11.91748 -11.84128 -11.73691 -11.20959 -10.89713 -10.72451 -10.53031 -10.11850 -9.62439 -9.36552 -5.19103 -0.55389 0.35587 0.76786 1.07696 1.38925 1.50048 1.83252 1.99749 2.27887 2.82264 2.95545 3.14017 3.21741 3.51089 3.55638 3.66316 3.78628 3.91822 4.13129 4.18007 4.29571 4.31009 4.37327 4.41298 4.46552 4.56909 4.60113 4.61212 4.70684 4.73739 4.79589 4.85543 4.91632 4.98578 5.01033 5.06437 5.41981 5.46939 5.47589 6.18001 6.20582 6.46593 6.59352 7.20446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.062 3.938 4 H 0.093 0.907 5 C -0.126 4.126 6 C 0.158 3.842 7 C 0.084 3.916 8 O -0.565 6.565 9 N -0.702 5.702 10 C 0.598 3.402 11 O -0.525 6.525 12 C -0.258 4.258 13 C -0.050 4.050 14 C -0.095 4.095 15 C -0.095 4.095 16 C -0.238 4.238 17 C -0.032 4.032 18 O -0.518 6.518 19 Si 0.662 3.338 20 S 0.204 5.796 21 C -0.151 4.151 22 H 0.088 0.912 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.382 0.618 30 H 0.401 0.599 31 H 0.154 0.846 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.129 0.871 36 H 0.378 0.622 37 H -0.238 1.238 38 H -0.247 1.247 39 H 0.100 0.900 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 1.005 -2.924 4.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.291 6.291 3 C 0.004 3.996 4 H 0.111 0.889 5 C -0.165 4.165 6 C 0.072 3.928 7 C 0.005 3.995 8 O -0.370 6.370 9 N -0.353 5.353 10 C 0.384 3.616 11 O -0.403 6.403 12 C -0.378 4.378 13 C -0.083 4.083 14 C -0.108 4.108 15 C -0.154 4.154 16 C -0.358 4.358 17 C -0.143 4.143 18 O -0.325 6.325 19 Si 0.559 3.441 20 S 0.473 5.527 21 C -0.189 4.189 22 H 0.106 0.894 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.230 0.770 30 H 0.236 0.764 31 H 0.171 0.829 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.146 0.854 36 H 0.227 0.773 37 H -0.161 1.161 38 H -0.170 1.170 39 H 0.119 0.881 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.539 -0.137 -4.282 5.557 hybrid contribution 1.012 0.535 2.032 2.332 sum -2.527 0.398 -2.251 3.407 Atomic orbital electron populations 1.22844 0.80729 1.03155 1.00134 1.87965 1.20006 1.26626 1.94497 1.23583 0.93991 0.85922 0.96131 0.88926 1.23544 0.94564 1.00037 0.98307 1.21391 0.81055 0.93205 0.97171 1.22248 0.97887 0.89021 0.90376 1.86446 1.84401 1.21813 1.44375 1.45539 1.05013 1.68822 1.15904 1.16888 0.82823 0.76489 0.85358 1.90823 1.84954 1.47795 1.16743 1.24614 0.97404 1.17231 0.98533 1.20689 0.89438 0.97064 1.01152 1.18695 0.97264 1.02243 0.92627 1.20631 0.91843 1.02152 1.00764 1.24426 1.00279 1.11025 1.00057 1.24415 0.85687 1.06527 0.97703 1.86636 1.34402 1.42664 1.68751 0.95464 0.87436 0.80944 0.80208 1.82716 0.96669 1.64437 1.08927 1.23863 0.96156 1.01163 0.97687 0.89397 0.93785 0.93810 0.89663 0.88114 0.92439 0.91803 0.77026 0.76425 0.82866 0.91284 0.89731 0.91847 0.85400 0.77340 1.16088 1.17049 0.88118 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.07 16 2 O -0.37 -0.58 10.71 -35.23 -0.38 -0.96 16 3 C 0.06 -0.01 3.96 -25.92 -0.10 -0.11 16 4 H 0.09 -0.17 7.41 -51.93 -0.38 -0.55 16 5 C -0.13 -0.14 6.39 -25.92 -0.17 -0.30 16 6 C 0.16 0.10 0.91 -130.91 -0.12 -0.02 16 7 C 0.08 0.01 6.17 37.16 0.23 0.24 16 8 O -0.56 -0.23 13.39 -35.23 -0.47 -0.70 16 9 N -0.70 -0.85 4.97 -48.08 -0.24 -1.09 16 10 C 0.60 2.05 7.44 -12.90 -0.10 1.96 16 11 O -0.53 -3.28 15.38 5.19 0.08 -3.20 16 12 C -0.26 -0.57 6.45 -36.79 -0.24 -0.81 16 13 C -0.05 -0.11 9.80 -40.43 -0.40 -0.51 16 14 C -0.10 -0.11 5.75 -106.45 -0.61 -0.72 16 15 C -0.10 0.00 8.67 36.00 0.31 0.31 16 16 C -0.24 -0.04 5.54 -35.86 -0.20 -0.24 16 17 C -0.03 0.03 2.76 36.00 0.10 0.13 16 18 O -0.52 0.08 9.86 -35.23 -0.35 -0.27 16 19 Si 0.66 -0.86 31.30 -169.99 -5.32 -6.18 16 20 S 0.20 -0.10 19.79 -107.50 -2.13 -2.22 16 21 C -0.15 0.10 7.19 -25.82 -0.19 -0.09 16 22 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 23 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 24 H 0.04 -0.08 8.14 -51.93 -0.42 -0.51 16 25 H 0.08 0.12 8.10 -51.93 -0.42 -0.30 16 26 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 -0.11 7.36 -51.93 -0.38 -0.49 16 28 H 0.06 0.11 7.42 -51.93 -0.39 -0.28 16 29 H 0.38 -1.29 9.12 45.56 0.42 -0.87 16 30 H 0.40 -0.21 7.83 -40.82 -0.32 -0.53 16 31 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16 32 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 33 H 0.08 0.05 6.42 -51.93 -0.33 -0.29 16 34 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 35 H 0.13 -0.22 7.96 -51.93 -0.41 -0.63 16 36 H 0.38 -0.93 8.66 45.56 0.39 -0.54 16 37 H -0.24 -0.33 7.11 56.52 0.40 0.07 16 38 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 39 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 40 H 0.08 -0.11 8.10 -51.93 -0.42 -0.53 16 LS Contribution 344.93 15.07 5.20 5.20 Total: 0.00 -7.74 344.93 -8.81 -16.55 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: -4.83 Total: -8.03 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -0.38 Total: 0.91 kcal Atomic # 7 Polarization: -0.85 SS G_CDS: -0.24 Total: -1.09 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -1.12 Total: -5.13 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: -5.32 Total: -6.18 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.13 Total: -2.22 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -7.74 -8.81 -16.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_6739946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.436 kcal (2) G-P(sol) polarization free energy of solvation -7.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds