Wall clock time and date at job start Tue Mar 9 2021 12:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99826 * 2 1 4 4 H 1.08999 * 112.91314 * 18.74819 * 3 2 1 5 5 C 1.53778 * 113.61605 * 149.99961 * 3 2 1 6 6 C 1.53780 * 87.17458 * 139.93775 * 5 3 2 7 7 C 1.52998 * 113.61681 * 89.15883 * 6 5 3 8 8 O 1.42900 * 109.47506 * 178.43460 * 7 6 5 9 9 N 1.46508 * 113.61618 * 220.06393 * 6 5 3 10 10 C 1.34779 * 119.99687 * 295.14170 * 9 6 5 11 11 O 1.21700 * 120.00130 * 5.02951 * 10 9 6 12 12 C 1.46578 * 119.99850 * 185.02498 * 10 9 6 13 13 C 1.36652 * 125.45818 * 179.97438 * 12 10 9 14 14 C 1.37469 * 113.29575 * 180.02562 * 13 12 10 15 15 C 1.50698 * 122.45050 * 179.97438 * 14 13 12 16 16 C 1.33821 * 115.10443 * 359.97438 * 14 13 12 17 17 C 1.50697 * 124.52633 * 180.02562 * 16 14 13 18 18 O 1.42901 * 109.46831 * 30.00280 * 17 16 14 19 19 Si 1.86298 * 109.47310 * 150.00313 * 17 16 14 20 20 S 1.70621 * 110.95286 * 359.73017 * 16 14 13 21 21 C 1.53784 * 113.61281 * 247.49787 * 3 2 1 22 22 H 1.08999 * 109.47014 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47080 * 300.00263 * 1 2 3 24 24 H 1.08996 * 109.47074 * 60.00176 * 1 2 3 25 25 H 1.08997 * 113.62027 * 254.52694 * 5 3 2 26 26 H 1.09000 * 113.61518 * 25.34940 * 5 3 2 27 27 H 1.08999 * 109.47357 * 298.43831 * 7 6 5 28 28 H 1.09003 * 109.46549 * 58.43609 * 7 6 5 29 29 H 0.96703 * 114.00003 * 179.97438 * 8 7 6 30 30 H 0.96999 * 120.00174 * 115.13969 * 9 6 5 31 31 H 1.07994 * 123.35103 * 359.97438 * 13 12 10 32 32 H 1.09006 * 109.47117 * 90.01825 * 15 14 13 33 33 H 1.09000 * 109.47244 * 210.02107 * 15 14 13 34 34 H 1.09000 * 109.47202 * 330.02238 * 15 14 13 35 35 H 1.08995 * 109.47577 * 270.00532 * 17 16 14 36 36 H 0.96701 * 114.00175 * 60.00064 * 18 17 16 37 37 H 1.48499 * 110.00094 * 180.02562 * 19 17 16 38 38 H 1.48500 * 109.99745 * 301.31895 * 19 17 16 39 39 H 1.08999 * 113.61487 * 334.56487 * 21 3 2 40 40 H 1.08994 * 113.61529 * 105.38867 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0798 0.3227 5 6 3.3755 1.3719 0.7045 6 6 3.8252 2.3175 -0.4218 7 6 3.5461 3.7934 -0.1311 8 8 4.0296 4.5918 -1.2131 9 7 5.1960 2.0756 -0.8788 10 6 6.2317 2.2808 -0.0411 11 8 6.0250 2.5783 1.1207 12 6 7.6072 2.1456 -0.5295 13 6 8.7357 2.3280 0.2192 14 6 9.8966 2.1381 -0.4921 15 6 11.2605 2.2874 0.1313 16 6 9.7271 1.8111 -1.7786 17 6 10.8505 1.5546 -2.7498 18 8 11.9782 1.0303 -2.0460 19 14 10.2930 0.3249 -4.0335 20 16 8.0693 1.7152 -2.1705 21 6 2.7534 1.6488 -1.3018 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 3.3384 1.8472 1.6847 26 1 3.9082 0.4210 0.7150 27 1 2.4726 3.9450 -0.0190 28 1 4.0522 4.0843 0.7895 29 1 3.8857 5.5410 -1.0965 30 1 5.3582 1.7677 -1.7843 31 1 8.7174 2.5955 1.2654 32 1 11.5823 1.3275 0.5354 33 1 11.9713 2.6199 -0.6252 34 1 11.2143 3.0227 0.9346 35 1 11.1290 2.4884 -3.2381 36 1 11.8027 0.1978 -1.5864 37 1 11.3922 0.0629 -4.9971 38 1 9.8804 -0.9420 -3.3778 39 1 3.1167 0.7740 -1.8410 40 1 2.2134 2.3465 -1.9418 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_6739946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:34 Heat of formation + Delta-G solvation = -96.296744 kcal Electronic energy + Delta-G solvation = -24393.809843 eV Core-core repulsion = 20689.229535 eV Total energy + Delta-G solvation = -3704.580309 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.80217 -40.33783 -39.55216 -38.01316 -37.38482 -36.66423 -34.40503 -32.06137 -30.24203 -28.77864 -27.28140 -26.90722 -26.58289 -24.77469 -23.55033 -21.72163 -20.45710 -19.95548 -19.41569 -18.62415 -18.05540 -17.63296 -17.31998 -16.84804 -16.60410 -16.35367 -16.12279 -16.02392 -15.78337 -15.40545 -15.20496 -14.81833 -14.56062 -14.41463 -13.92072 -13.68437 -13.50849 -13.49972 -13.17433 -13.11987 -12.95179 -12.69829 -12.53376 -12.37170 -12.24334 -11.90335 -11.85794 -11.74970 -11.33589 -10.90064 -10.80596 -10.51361 -10.27023 -9.67678 -9.37998 -5.12245 -0.65597 0.31099 0.72184 1.07288 1.32611 1.53693 1.86431 1.90792 2.09681 2.85936 2.98648 3.22377 3.23076 3.53748 3.56144 3.65293 3.73516 3.97165 4.09987 4.17717 4.28151 4.37111 4.47883 4.49636 4.55806 4.56587 4.57082 4.62747 4.66574 4.80128 4.84449 4.85184 4.90278 4.92525 4.99658 5.01081 5.37265 5.38402 5.43487 6.23974 6.35198 6.35579 6.78565 7.03768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.397 6.397 3 C 0.067 3.933 4 H 0.112 0.888 5 C -0.132 4.132 6 C 0.150 3.850 7 C 0.087 3.913 8 O -0.578 6.578 9 N -0.694 5.694 10 C 0.594 3.406 11 O -0.563 6.563 12 C -0.285 4.285 13 C -0.060 4.060 14 C -0.108 4.108 15 C -0.091 4.091 16 C -0.239 4.239 17 C -0.036 4.036 18 O -0.529 6.529 19 Si 0.735 3.265 20 S 0.258 5.742 21 C -0.139 4.139 22 H 0.091 0.909 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.398 0.602 30 H 0.409 0.591 31 H 0.144 0.856 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.142 0.858 36 H 0.387 0.613 37 H -0.273 1.273 38 H -0.275 1.275 39 H 0.100 0.900 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 1.251 -4.373 5.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.316 6.316 3 C 0.008 3.992 4 H 0.130 0.870 5 C -0.170 4.170 6 C 0.064 3.936 7 C 0.008 3.992 8 O -0.386 6.386 9 N -0.345 5.345 10 C 0.381 3.619 11 O -0.444 6.444 12 C -0.405 4.405 13 C -0.094 4.094 14 C -0.121 4.121 15 C -0.150 4.150 16 C -0.358 4.358 17 C -0.147 4.147 18 O -0.337 6.337 19 Si 0.636 3.364 20 S 0.528 5.472 21 C -0.177 4.177 22 H 0.110 0.890 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.247 0.753 30 H 0.246 0.754 31 H 0.162 0.838 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.159 0.841 36 H 0.237 0.763 37 H -0.198 1.198 38 H -0.201 1.201 39 H 0.119 0.881 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.186 0.124 -5.751 7.114 hybrid contribution 1.239 0.414 2.449 2.775 sum -2.948 0.538 -3.302 4.459 Atomic orbital electron populations 1.22993 0.79507 1.03788 1.01087 1.87930 1.21481 1.27594 1.94627 1.23649 0.93573 0.85948 0.96009 0.86992 1.23509 0.95830 0.99310 0.98378 1.21568 0.80957 0.93668 0.97399 1.22208 0.99021 0.88582 0.89426 1.86396 1.84693 1.23201 1.44333 1.45525 1.05030 1.67904 1.15995 1.17124 0.83652 0.76029 0.85095 1.90792 1.85604 1.49739 1.18289 1.24674 0.96855 1.18437 1.00526 1.20736 0.90107 0.97561 1.01045 1.18749 0.97255 1.03036 0.93049 1.20603 0.91262 1.02509 1.00606 1.24685 1.01205 1.09943 1.00010 1.24631 0.85268 1.07437 0.97401 1.86617 1.34749 1.43408 1.68948 0.94656 0.85388 0.78850 0.77515 1.82443 0.95523 1.62895 1.06367 1.23795 0.95329 1.01158 0.97431 0.89047 0.93015 0.92634 0.90571 0.89899 0.89982 0.93925 0.75253 0.75443 0.83849 0.90626 0.89951 0.91950 0.84102 0.76277 1.19841 1.20071 0.88137 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.40 -1.22 10.71 -148.98 -1.60 -2.82 16 3 C 0.07 -0.03 3.96 31.12 0.12 0.09 16 4 H 0.11 -0.53 7.41 -2.39 -0.02 -0.55 16 5 C -0.13 -0.46 6.39 31.12 0.20 -0.26 16 6 C 0.15 0.25 0.91 4.19 0.00 0.25 16 7 C 0.09 0.04 6.17 71.98 0.44 0.49 16 8 O -0.58 -0.26 13.39 -148.98 -1.99 -2.25 16 9 N -0.69 -2.19 4.97 -424.26 -2.11 -4.30 16 10 C 0.59 5.03 7.44 86.42 0.64 5.67 16 11 O -0.56 -8.46 15.38 -4.35 -0.07 -8.53 16 12 C -0.29 -1.56 6.45 24.08 0.16 -1.40 16 13 C -0.06 -0.36 9.80 21.72 0.21 -0.14 16 14 C -0.11 -0.29 5.75 -21.05 -0.12 -0.42 16 15 C -0.09 -0.05 8.67 71.24 0.62 0.57 16 16 C -0.24 0.00 5.54 24.68 0.14 0.14 16 17 C -0.04 0.09 2.76 71.24 0.20 0.29 16 18 O -0.53 0.43 9.86 -148.98 -1.47 -1.04 16 19 Si 0.73 -2.40 31.30 68.60 2.15 -0.25 16 20 S 0.26 -0.36 19.79 -56.49 -1.12 -1.48 16 21 C -0.14 0.28 7.19 31.18 0.22 0.50 16 22 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 23 H 0.05 -0.23 8.14 -2.39 -0.02 -0.24 16 24 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 25 H 0.08 0.37 8.10 -2.39 -0.02 0.35 16 26 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.08 -0.39 7.36 -2.39 -0.02 -0.41 16 28 H 0.04 0.21 7.42 -2.39 -0.02 0.19 16 29 H 0.40 -2.84 9.12 -74.06 -0.68 -3.52 16 30 H 0.41 -0.43 7.83 -92.71 -0.73 -1.15 16 31 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 33 H 0.08 0.09 6.42 -2.39 -0.02 0.07 16 34 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 35 H 0.14 -0.69 7.96 -2.39 -0.02 -0.71 16 36 H 0.39 -2.05 8.66 -74.06 -0.64 -2.69 16 37 H -0.27 -0.76 7.11 99.48 0.71 -0.06 16 38 H -0.28 -0.42 7.11 99.48 0.71 0.28 16 39 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.10 -0.44 8.10 -2.39 -0.02 -0.46 16 Total: 0.00 -19.02 344.93 -3.05 -22.07 By element: Atomic # 1 Polarization: -7.43 SS G_CDS: -0.91 Total: -8.34 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 4.07 Total: 6.95 kcal Atomic # 7 Polarization: -2.19 SS G_CDS: -2.11 Total: -4.30 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -5.13 Total: -14.64 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: 2.15 Total: -0.25 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -1.12 Total: -1.48 kcal Total: -19.02 -3.05 -22.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_6739946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.227 kcal (2) G-P(sol) polarization free energy of solvation -19.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds