Wall clock time and date at job start Tue Mar 9 2021 12:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00587 * 2 1 4 4 H 1.09000 * 112.90550 * 341.25381 * 3 2 1 5 5 C 1.53786 * 113.61348 * 112.50011 * 3 2 1 6 6 C 1.53781 * 87.07973 * 139.98751 * 5 3 2 7 7 C 1.52997 * 113.69275 * 89.12610 * 6 5 3 8 8 O 1.42901 * 109.47164 * 76.35907 * 7 6 5 9 9 N 1.46499 * 113.60965 * 220.02021 * 6 5 3 10 10 C 1.34784 * 119.99844 * 162.32394 * 9 6 5 11 11 O 1.21286 * 119.99547 * 355.01500 * 10 9 6 12 12 C 1.50692 * 120.00028 * 175.02144 * 10 9 6 13 13 N 1.46501 * 109.47277 * 179.97438 * 12 10 9 14 14 C 1.36829 * 125.06254 * 264.97642 * 13 12 10 15 15 C 1.34239 * 109.94242 * 179.97438 * 14 13 12 16 16 C 1.50695 * 126.50170 * 179.97438 * 15 14 13 17 17 O 1.42904 * 109.47130 * 255.02072 * 16 15 14 18 18 Si 1.86300 * 109.47121 * 15.02547 * 16 15 14 19 19 C 1.46495 * 106.99317 * 0.24003 * 15 14 13 20 20 C 1.39590 * 134.03086 * 180.47513 * 19 15 14 21 21 C 1.36668 * 119.76329 * 179.63791 * 20 19 15 22 22 C 1.38786 * 120.52554 * 359.67994 * 21 20 19 23 23 C 1.37783 * 120.66954 * 0.02562 * 22 21 20 24 24 C 1.37690 * 125.06521 * 84.96826 * 13 12 10 25 25 C 1.53777 * 113.61968 * 209.99938 * 3 2 1 26 26 H 1.09002 * 109.47304 * 300.00548 * 1 2 3 27 27 H 1.08999 * 109.46867 * 59.99942 * 1 2 3 28 28 H 1.08997 * 109.47730 * 179.97438 * 1 2 3 29 29 H 1.08997 * 113.61279 * 25.43779 * 5 3 2 30 30 H 1.09003 * 113.60976 * 254.53244 * 5 3 2 31 31 H 1.08994 * 109.47093 * 196.35629 * 7 6 5 32 32 H 1.08996 * 109.47147 * 316.36330 * 7 6 5 33 33 H 0.96694 * 113.99990 * 180.02562 * 8 7 6 34 34 H 0.96996 * 120.00824 * 342.32066 * 9 6 5 35 35 H 1.08998 * 109.47557 * 59.99435 * 12 10 9 36 36 H 1.09001 * 109.47054 * 299.99229 * 12 10 9 37 37 H 1.08002 * 125.03288 * 359.97049 * 14 13 12 38 38 H 1.09005 * 109.46976 * 135.02696 * 16 15 14 39 39 H 0.96702 * 113.99625 * 60.00489 * 17 16 15 40 40 H 1.48490 * 110.00228 * 58.68209 * 18 16 15 41 41 H 1.48503 * 109.99695 * 179.97438 * 18 16 15 42 42 H 1.08001 * 120.12360 * 359.34650 * 20 19 15 43 43 H 1.07997 * 119.73443 * 179.70071 * 21 20 19 44 44 H 1.08000 * 119.66565 * 179.97438 * 22 21 20 45 45 H 1.08003 * 120.11624 * 180.02562 * 23 22 21 46 46 H 1.08998 * 113.61666 * 105.46971 * 25 3 2 47 47 H 1.08999 * 113.68585 * 334.57851 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7535 1.6487 1.3018 6 6 3.8228 2.3180 0.4223 7 6 3.5433 3.7937 0.1305 8 8 3.8595 4.5756 1.2840 9 7 5.1935 2.0784 0.8805 10 6 6.2296 2.2848 0.0435 11 8 6.0239 2.5813 -1.1144 12 6 7.6434 2.1471 0.5464 13 7 8.5795 2.4190 -0.5473 14 6 9.1497 1.4678 -1.3487 15 6 9.9560 2.0514 -2.2494 16 6 10.7678 1.3541 -3.3103 17 8 12.1441 1.3419 -2.9257 18 14 10.1619 -0.3968 -3.5054 19 6 9.9019 3.4941 -2.0011 20 6 10.5013 4.6044 -2.5981 21 6 10.2334 5.8575 -2.1228 22 6 9.3647 6.0357 -1.0552 23 6 8.7575 4.9542 -0.4552 24 6 9.0163 3.6698 -0.9220 25 6 3.3756 1.3718 -0.7045 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1166 0.7738 1.8410 30 1 2.2140 2.3476 1.9412 31 1 4.1566 4.1205 -0.7092 32 1 2.4896 3.9218 -0.1175 33 1 3.7059 5.5235 1.1708 34 1 5.3555 1.7712 1.7862 35 1 7.8008 1.1336 0.9153 36 1 7.8124 2.8584 1.3549 37 1 8.9768 0.4047 -1.2684 38 1 10.6599 1.8836 -4.2570 39 1 12.3149 0.8860 -2.0902 40 1 8.7235 -0.3983 -3.8743 41 1 10.9542 -1.0950 -4.5495 42 1 11.1780 4.4735 -3.4295 43 1 10.7012 6.7159 -2.5819 44 1 9.1632 7.0321 -0.6906 45 1 8.0826 5.1032 0.3748 46 1 3.3385 1.8470 -1.6847 47 1 3.9098 0.4217 -0.7146 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18341582_9818708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:44 Heat of formation + Delta-G solvation = -56.698402 kcal Electronic energy + Delta-G solvation = -31240.455239 eV Core-core repulsion = 26971.023986 eV Total energy + Delta-G solvation = -4269.431253 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.55862 -41.69476 -39.84124 -38.16167 -38.00834 -37.55114 -36.69375 -34.49283 -33.85211 -31.44433 -30.24092 -29.27218 -28.37326 -27.32336 -26.89024 -25.87657 -24.22911 -23.61316 -22.63208 -21.58185 -20.66829 -20.17660 -18.73834 -18.62150 -18.36818 -17.99153 -17.65174 -17.21379 -16.85713 -16.43613 -16.40294 -16.15391 -16.08424 -15.91885 -15.60370 -15.36592 -15.26462 -15.00136 -14.73959 -14.68344 -14.36845 -14.06823 -13.73111 -13.66899 -13.52768 -13.30850 -13.03797 -12.73053 -12.71556 -12.57786 -12.48797 -12.27070 -12.12919 -11.93701 -11.82746 -11.79007 -11.30560 -10.85068 -10.54721 -10.53341 -10.31557 -10.18731 -9.16378 -8.62975 -5.06097 0.13437 0.62548 1.33435 1.40468 1.49708 1.63274 1.74558 1.98864 2.15539 2.81688 2.92009 2.95551 3.23086 3.50608 3.58759 3.61547 3.66650 3.69819 3.74816 3.87136 3.92810 4.04231 4.14020 4.16242 4.20513 4.28867 4.30978 4.43136 4.47598 4.50986 4.52300 4.55588 4.60957 4.64800 4.70735 4.77633 4.82020 4.87268 4.87701 4.90340 4.98274 5.12249 5.42597 5.49625 5.64891 5.72653 5.74982 6.19469 6.19697 6.23152 6.49139 6.70267 6.88366 7.15280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.396 6.396 3 C 0.062 3.938 4 H 0.104 0.896 5 C -0.135 4.135 6 C 0.157 3.843 7 C 0.088 3.912 8 O -0.575 6.575 9 N -0.693 5.693 10 C 0.494 3.506 11 O -0.564 6.564 12 C 0.088 3.912 13 N -0.465 5.465 14 C 0.080 3.920 15 C -0.224 4.224 16 C -0.040 4.040 17 O -0.560 6.560 18 Si 0.799 3.201 19 C -0.117 4.117 20 C -0.091 4.091 21 C -0.154 4.154 22 C -0.108 4.108 23 C -0.132 4.132 24 C 0.092 3.908 25 C -0.129 4.129 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.397 0.603 34 H 0.419 0.581 35 H 0.165 0.835 36 H 0.139 0.861 37 H 0.207 0.793 38 H 0.088 0.912 39 H 0.393 0.607 40 H -0.295 1.295 41 H -0.297 1.297 42 H 0.116 0.884 43 H 0.136 0.864 44 H 0.145 0.855 45 H 0.130 0.870 46 H 0.065 0.935 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 -1.841 8.499 9.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.315 6.315 3 C 0.004 3.996 4 H 0.122 0.878 5 C -0.173 4.173 6 C 0.070 3.930 7 C 0.009 3.991 8 O -0.383 6.383 9 N -0.347 5.347 10 C 0.280 3.720 11 O -0.442 6.442 12 C -0.036 4.036 13 N -0.147 5.147 14 C -0.046 4.046 15 C -0.232 4.232 16 C -0.149 4.149 17 O -0.367 6.367 18 Si 0.705 3.295 19 C -0.121 4.121 20 C -0.110 4.110 21 C -0.173 4.173 22 C -0.127 4.127 23 C -0.153 4.153 24 C -0.013 4.013 25 C -0.168 4.168 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.247 0.753 34 H 0.257 0.743 35 H 0.183 0.817 36 H 0.157 0.843 37 H 0.223 0.777 38 H 0.106 0.894 39 H 0.243 0.757 40 H -0.223 1.223 41 H -0.224 1.224 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.163 0.837 45 H 0.148 0.852 46 H 0.084 0.916 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.694 -2.707 7.105 8.936 hybrid contribution -0.371 1.544 -0.625 1.706 sum -5.065 -1.163 6.480 8.307 Atomic orbital electron populations 1.22982 0.79606 1.03836 1.00931 1.87918 1.21369 1.27532 1.94657 1.23678 0.93660 0.85790 0.96518 0.87850 1.23696 0.95408 1.01074 0.97100 1.21313 0.81996 0.92803 0.96915 1.22128 0.99616 0.89525 0.87875 1.86371 1.90421 1.23889 1.37620 1.45622 1.04339 1.67949 1.16747 1.21417 0.88245 0.76395 0.85980 1.90781 1.86090 1.48075 1.19222 1.21963 0.84001 1.08899 0.88756 1.43432 1.37911 1.03955 1.29397 1.22053 0.95399 0.95480 0.91659 1.20773 1.07077 0.91927 1.03408 1.24553 0.84002 1.10293 0.96079 1.86451 1.23120 1.81529 1.45646 0.94131 0.75255 0.73916 0.86223 1.19358 1.00721 0.93937 0.98112 1.20448 0.99194 0.91786 0.99524 1.20907 1.00660 0.97070 0.98625 1.21111 0.96624 0.98921 0.96047 1.20230 1.03231 0.89242 1.02574 1.18378 0.98429 0.86980 0.97538 1.23467 0.95774 0.99497 0.98034 0.92725 0.93289 0.88869 0.87643 0.89007 0.94491 0.91090 0.75339 0.74318 0.81706 0.84296 0.77689 0.89412 0.75694 1.22305 1.22449 0.86559 0.84622 0.83703 0.85195 0.91596 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 10.85 113.37 1.23 1.16 16 2 O -0.40 -0.89 10.71 -148.98 -1.60 -2.48 16 3 C 0.06 -0.08 3.96 31.12 0.12 0.05 16 4 H 0.10 -0.42 7.34 -2.39 -0.02 -0.44 16 5 C -0.13 0.52 7.22 31.12 0.22 0.75 16 6 C 0.16 -0.21 0.86 4.13 0.00 -0.21 16 7 C 0.09 -0.05 6.20 71.98 0.45 0.40 16 8 O -0.58 1.06 13.53 -148.98 -2.02 -0.96 16 9 N -0.69 2.65 5.12 -420.54 -2.15 0.49 16 10 C 0.49 0.25 7.56 87.65 0.66 0.91 16 11 O -0.56 -6.10 14.84 -3.05 -0.05 -6.15 16 12 C 0.09 -0.51 6.48 85.63 0.56 0.04 16 13 N -0.46 -1.07 2.27 -520.01 -1.18 -2.25 16 14 C 0.08 0.10 9.89 83.00 0.82 0.93 16 15 C -0.22 -1.44 5.58 -18.63 -0.10 -1.54 16 16 C -0.04 -0.19 3.06 71.23 0.22 0.02 16 17 O -0.56 -2.64 12.88 -148.98 -1.92 -4.56 16 18 Si 0.80 0.30 30.75 68.60 2.11 2.41 16 19 C -0.12 -1.27 6.35 -20.20 -0.13 -1.40 16 20 C -0.09 -0.98 10.05 22.23 0.22 -0.75 16 21 C -0.15 -1.17 9.97 22.03 0.22 -0.95 16 22 C -0.11 -0.62 10.01 22.29 0.22 -0.40 16 23 C -0.13 -0.83 10.00 22.37 0.22 -0.61 16 24 C 0.09 0.75 6.80 39.03 0.27 1.01 16 25 C -0.13 -0.23 6.40 31.12 0.20 -0.03 16 26 H 0.05 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.09 -0.45 8.10 -2.39 -0.02 -0.47 16 31 H 0.04 0.18 7.21 -2.39 -0.02 0.17 16 32 H 0.07 -0.28 7.32 -2.39 -0.02 -0.29 16 33 H 0.40 -3.39 9.12 -74.06 -0.68 -4.07 16 34 H 0.42 -4.16 8.71 -92.71 -0.81 -4.97 16 35 H 0.17 -2.39 8.12 -2.39 -0.02 -2.41 16 36 H 0.14 -1.34 8.14 -2.39 -0.02 -1.36 16 37 H 0.21 -1.50 6.35 -2.91 -0.02 -1.52 16 38 H 0.09 0.74 7.96 -2.38 -0.02 0.72 16 39 H 0.39 -1.73 8.70 -74.06 -0.64 -2.37 16 40 H -0.30 -2.06 7.11 99.48 0.71 -1.35 16 41 H -0.30 -2.16 7.11 99.48 0.71 -1.45 16 42 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 43 H 0.14 0.46 8.06 -2.91 -0.02 0.44 16 44 H 0.15 0.06 8.06 -2.91 -0.02 0.04 16 45 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 46 H 0.07 0.32 8.10 -2.39 -0.02 0.30 16 47 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 Total: 0.00 -30.42 393.64 -2.46 -32.89 By element: Atomic # 1 Polarization: -17.71 SS G_CDS: -1.07 Total: -18.78 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 5.41 Total: -0.60 kcal Atomic # 7 Polarization: 1.57 SS G_CDS: -3.33 Total: -1.76 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -5.58 Total: -14.15 kcal Atomic # 14 Polarization: 0.30 SS G_CDS: 2.11 Total: 2.41 kcal Total: -30.42 -2.46 -32.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18341582_9818708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.813 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds