Wall clock time and date at job start Tue Mar 9 2021 12:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81402 * 102.99864 * 2 1 4 4 H 1.08996 * 112.84775 * 43.80025 * 3 2 1 5 5 C 1.53782 * 113.61397 * 175.00266 * 3 2 1 6 6 C 1.53781 * 87.08224 * 139.97866 * 5 3 2 7 7 H 1.09006 * 113.61315 * 89.19522 * 6 5 3 8 8 C 1.52997 * 113.61559 * 220.01642 * 6 5 3 9 9 N 1.46497 * 109.46983 * 185.00108 * 8 6 5 10 10 C 1.34780 * 119.99566 * 180.02562 * 9 8 6 11 11 O 1.21280 * 120.00423 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.38234 * 119.99770 * 269.72517 * 13 12 10 15 15 C 1.38239 * 119.99901 * 179.76875 * 14 13 12 16 16 C 1.38240 * 119.99645 * 0.50240 * 15 14 13 17 17 C 1.50698 * 119.99659 * 179.72727 * 16 15 14 18 18 O 1.42902 * 109.47191 * 245.02464 * 17 16 15 19 19 Si 1.86305 * 109.47327 * 5.02366 * 17 16 15 20 20 C 1.38227 * 120.00205 * 359.74956 * 16 15 14 21 21 C 1.38232 * 119.99860 * 89.99959 * 13 12 10 22 22 C 1.53782 * 113.61210 * 272.49884 * 3 2 1 23 23 H 1.09006 * 109.47090 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47418 * 300.00148 * 1 2 3 25 25 H 1.08993 * 109.47358 * 60.00460 * 1 2 3 26 26 H 1.08994 * 113.61682 * 25.42832 * 5 3 2 27 27 H 1.09005 * 113.68520 * 254.53705 * 5 3 2 28 28 H 1.09001 * 109.46832 * 64.99925 * 8 6 5 29 29 H 1.09002 * 109.47153 * 305.00115 * 8 6 5 30 30 H 0.96995 * 120.00423 * 359.97438 * 9 8 6 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.07998 * 120.00015 * 0.02562 * 14 13 12 34 34 H 1.08001 * 119.99843 * 180.23314 * 15 14 13 35 35 H 1.09005 * 109.47093 * 125.02619 * 17 16 15 36 36 H 0.96698 * 113.99980 * 59.99946 * 18 17 16 37 37 H 1.48501 * 109.99791 * 180.02562 * 19 17 16 38 38 H 1.48501 * 109.99886 * 301.31841 * 19 17 16 39 39 H 1.07996 * 120.00251 * 179.97438 * 20 16 15 40 40 H 1.07998 * 120.00407 * 0.02562 * 21 13 12 41 41 H 1.08998 * 113.61766 * 105.46878 * 22 3 2 42 42 H 1.08998 * 113.61542 * 334.56587 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6108 2.3430 0.6952 5 6 3.7283 2.0520 0.1227 6 6 3.5205 3.1738 -0.9084 7 1 3.2656 4.1352 -0.4624 8 6 4.6478 3.2766 -1.9377 9 7 4.4200 4.4413 -2.7967 10 6 5.2914 4.7318 -3.7830 11 8 6.2642 4.0294 -3.9593 12 6 5.0574 5.9303 -4.6663 13 6 6.1677 6.0314 -5.6802 14 6 7.3039 6.7634 -5.3902 15 6 8.3245 6.8523 -6.3184 16 6 8.2043 6.2177 -7.5406 17 6 9.3142 6.3197 -8.5549 18 8 8.8460 7.0290 -9.7037 19 14 10.7567 7.2315 -7.8074 20 6 7.0659 5.4900 -7.8326 21 6 6.0475 5.3969 -6.9024 22 6 2.3007 2.3815 -1.4077 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 4.3572 1.2382 -0.2381 27 1 4.0269 2.4134 1.1068 28 1 4.6664 2.3734 -2.5476 29 1 5.6018 3.3865 -1.4220 30 1 3.6418 5.0029 -2.6560 31 1 4.1031 5.8210 -5.1816 32 1 5.0396 6.8334 -4.0562 33 1 7.3960 7.2625 -4.4369 34 1 9.2138 7.4211 -6.0903 35 1 9.6302 5.3189 -8.8496 36 1 8.5479 7.9294 -9.5155 37 1 11.8578 7.3393 -8.7980 38 1 10.3311 8.5861 -7.3725 39 1 6.9718 4.9946 -8.7876 40 1 5.1578 4.8290 -7.1309 41 1 1.4455 3.0089 -1.6589 42 1 2.5393 1.6578 -2.1870 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_12335836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:06 Heat of formation + Delta-G solvation = -18.714239 kcal Electronic energy + Delta-G solvation = -22014.843870 eV Core-core repulsion = 18667.228416 eV Total energy + Delta-G solvation = -3347.615454 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.123 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19844 -40.36544 -39.59133 -37.77843 -35.45861 -34.05175 -31.93244 -30.54600 -29.82303 -28.67800 -26.71227 -25.75718 -23.93746 -23.81460 -22.19394 -21.42741 -20.44355 -18.59403 -18.21044 -17.59747 -17.14284 -16.94190 -16.61942 -16.48691 -16.19848 -16.03267 -15.72071 -15.25100 -14.87420 -14.78534 -14.68758 -14.46656 -14.22824 -14.06888 -13.94937 -13.49503 -13.43390 -13.25252 -13.11961 -12.88202 -12.69964 -12.27122 -12.01297 -11.88837 -11.74906 -11.59946 -11.34057 -10.95412 -10.76859 -10.60699 -10.06207 -9.86866 -9.62284 -8.71543 -4.93231 0.24499 0.46044 0.78153 1.29154 1.56208 1.64753 1.68514 1.91094 2.20770 2.79173 3.40677 3.41586 3.46947 3.62535 3.64814 3.80314 3.81439 3.90776 4.06068 4.08805 4.21595 4.30451 4.31468 4.34919 4.38670 4.47884 4.55352 4.63234 4.65353 4.73053 4.76034 4.77340 4.85087 4.86583 4.98041 5.04028 5.06376 5.09457 5.36263 5.38590 5.52462 5.53939 5.59997 6.02582 6.46894 6.59954 7.31601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.323 6.323 3 C -0.073 4.073 4 H 0.119 0.881 5 C -0.106 4.106 6 C -0.102 4.102 7 H 0.125 0.875 8 C 0.133 3.867 9 N -0.716 5.716 10 C 0.510 3.490 11 O -0.581 6.581 12 C -0.098 4.098 13 C -0.071 4.071 14 C -0.111 4.111 15 C -0.125 4.125 16 C -0.125 4.125 17 C -0.085 4.085 18 O -0.548 6.548 19 Si 0.764 3.236 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.117 4.117 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.418 0.582 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.386 0.614 37 H -0.302 1.302 38 H -0.277 1.277 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.090 0.910 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 4.232 4.888 8.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.094 6.094 3 C -0.201 4.201 4 H 0.137 0.863 5 C -0.145 4.145 6 C -0.122 4.122 7 H 0.143 0.857 8 C 0.009 3.991 9 N -0.370 5.370 10 C 0.298 3.702 11 O -0.460 6.460 12 C -0.137 4.137 13 C -0.071 4.071 14 C -0.129 4.129 15 C -0.142 4.142 16 C -0.126 4.126 17 C -0.193 4.193 18 O -0.356 6.356 19 Si 0.669 3.331 20 C -0.126 4.126 21 C -0.135 4.135 22 C -0.157 4.157 23 H 0.120 0.880 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.256 0.744 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.136 0.864 36 H 0.235 0.765 37 H -0.230 1.230 38 H -0.203 1.203 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.109 0.891 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.038 2.935 4.468 6.699 hybrid contribution -1.836 1.398 -0.660 2.400 sum -5.874 4.333 3.808 8.232 Atomic orbital electron populations 1.23362 0.91643 1.07006 1.05750 1.87253 1.10525 1.13872 1.97798 1.24760 1.01227 0.91970 1.02156 0.86304 1.22794 0.93032 0.98012 1.00655 1.22670 0.94468 0.99469 0.95568 0.85717 1.21242 0.98315 0.88183 0.91357 1.45876 1.27946 1.30212 1.32929 1.21019 0.82031 0.86367 0.80810 1.90751 1.31018 1.52841 1.71412 1.20756 0.99244 0.97638 0.96041 1.19605 0.95923 0.97069 0.94548 1.21235 0.92907 0.98984 0.99729 1.21202 0.99456 1.00033 0.93552 1.20318 0.96851 0.99541 0.95859 1.25231 1.02088 1.03197 0.88830 1.86564 1.84600 1.31503 1.32980 0.93918 0.74983 0.80390 0.83777 1.21105 0.93463 0.98457 0.99583 1.21248 0.99499 0.99036 0.93719 1.23342 0.98876 0.98879 0.94623 0.88010 0.89587 0.89572 0.90223 0.89095 0.93025 0.92302 0.74448 0.85386 0.84880 0.84033 0.84307 0.86432 0.76511 1.23002 1.20311 0.85918 0.85071 0.89148 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.34 10.76 113.37 1.22 1.56 16 2 S -0.32 -0.72 22.17 -56.49 -1.25 -1.97 16 3 C -0.07 0.28 4.28 31.12 0.13 0.42 16 4 H 0.12 -0.75 8.14 -2.39 -0.02 -0.77 16 5 C -0.11 0.45 7.23 31.12 0.23 0.68 16 6 C -0.10 0.78 3.75 -10.27 -0.04 0.74 16 7 H 0.12 -1.47 8.14 -2.38 -0.02 -1.49 16 8 C 0.13 -0.37 5.51 86.38 0.48 0.11 16 9 N -0.72 3.81 5.56 -463.06 -2.57 1.24 16 10 C 0.51 0.33 7.82 87.66 0.69 1.02 16 11 O -0.58 -6.72 16.03 -3.03 -0.05 -6.76 16 12 C -0.10 0.53 5.83 29.10 0.17 0.70 16 13 C -0.07 -0.09 4.37 -19.87 -0.09 -0.18 16 14 C -0.11 -0.14 9.70 22.27 0.22 0.07 16 15 C -0.13 -0.25 8.67 22.27 0.19 -0.06 16 16 C -0.13 -0.47 5.35 -19.87 -0.11 -0.57 16 17 C -0.08 -0.23 2.80 71.24 0.20 -0.03 16 18 O -0.55 -2.77 12.83 -148.98 -1.91 -4.68 16 19 Si 0.76 0.41 29.88 68.60 2.05 2.46 16 20 C -0.11 -0.52 9.69 22.27 0.22 -0.30 16 21 C -0.12 -0.37 9.70 22.27 0.22 -0.16 16 22 C -0.12 0.73 7.22 31.12 0.22 0.96 16 23 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 24 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 25 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.08 -0.06 8.06 -2.39 -0.02 -0.08 16 27 H 0.09 -0.53 8.14 -2.38 -0.02 -0.55 16 28 H 0.05 0.09 7.84 -2.39 -0.02 0.07 16 29 H 0.06 0.01 8.14 -2.39 -0.02 0.00 16 30 H 0.42 -5.19 8.47 -92.71 -0.79 -5.97 16 31 H 0.13 -1.30 8.09 -2.39 -0.02 -1.32 16 32 H 0.13 -1.48 8.08 -2.39 -0.02 -1.50 16 33 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 34 H 0.14 -0.22 4.85 -2.91 -0.01 -0.24 16 35 H 0.12 0.24 7.96 -2.38 -0.02 0.23 16 36 H 0.39 -0.38 8.70 -74.06 -0.64 -1.02 16 37 H -0.30 -2.37 7.11 99.48 0.71 -1.67 16 38 H -0.28 -0.86 7.01 99.48 0.70 -0.17 16 39 H 0.12 0.51 8.06 -2.91 -0.02 0.49 16 40 H 0.13 0.02 8.06 -2.91 -0.02 0.00 16 41 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 42 H 0.08 -0.19 7.85 -2.39 -0.02 -0.21 16 Total: 0.00 -21.36 362.50 -0.17 -21.53 By element: Atomic # 1 Polarization: -16.38 SS G_CDS: -0.38 Total: -16.76 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 3.94 Total: 4.95 kcal Atomic # 7 Polarization: 3.81 SS G_CDS: -2.57 Total: 1.24 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.96 Total: -11.45 kcal Atomic # 14 Polarization: 0.41 SS G_CDS: 2.05 Total: 2.46 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -1.25 Total: -1.97 kcal Total: -21.36 -0.17 -21.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_12335836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.818 kcal (2) G-P(sol) polarization free energy of solvation -21.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds