Wall clock time and date at job start Tue Mar 9 2021 12:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81398 * 103.00320 * 2 1 4 4 H 1.09004 * 112.85027 * 316.19848 * 3 2 1 5 5 C 1.53778 * 113.68794 * 87.46189 * 3 2 1 6 6 C 1.53785 * 87.08228 * 139.99434 * 5 3 2 7 7 H 1.08996 * 113.68960 * 89.12508 * 6 5 3 8 8 C 1.52998 * 113.61828 * 220.01819 * 6 5 3 9 9 N 1.46495 * 109.47211 * 272.49604 * 8 6 5 10 10 C 1.34781 * 119.99967 * 179.97438 * 9 8 6 11 11 O 1.21551 * 119.99825 * 0.02562 * 10 9 8 12 12 C 1.47854 * 119.99925 * 180.02562 * 10 9 8 13 13 C 1.39581 * 120.11411 * 0.02562 * 12 10 9 14 14 C 1.38015 * 119.98521 * 179.97438 * 13 12 10 15 15 C 1.38225 * 120.21749 * 359.72901 * 14 13 12 16 16 C 1.38950 * 120.22646 * 0.55237 * 15 14 13 17 17 N 1.40222 * 119.99454 * 179.71944 * 16 15 14 18 18 C 1.36560 * 125.67142 * 244.74859 * 17 16 15 19 19 C 1.50703 * 125.89814 * 0.02562 * 18 17 16 20 20 C 1.34852 * 108.20403 * 179.75618 * 18 17 16 21 21 C 1.40947 * 107.46539 * 0.22986 * 20 18 17 22 22 C 1.50697 * 126.26372 * 180.02562 * 21 20 18 23 23 O 1.42897 * 109.47042 * 254.97112 * 22 21 20 24 24 Si 1.86298 * 109.47394 * 14.97636 * 22 21 20 25 25 C 1.34852 * 107.46348 * 359.97438 * 21 20 18 26 26 C 1.50701 * 125.89501 * 180.02562 * 25 21 20 27 27 C 1.38551 * 120.00805 * 359.44599 * 16 15 14 28 28 C 1.53783 * 113.61622 * 184.99798 * 3 2 1 29 29 H 1.08998 * 109.47254 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46998 * 299.99721 * 1 2 3 31 31 H 1.09003 * 109.46991 * 59.99648 * 1 2 3 32 32 H 1.09003 * 113.61774 * 25.45117 * 5 3 2 33 33 H 1.09004 * 113.61826 * 254.53791 * 5 3 2 34 34 H 1.08995 * 109.47176 * 152.49283 * 8 6 5 35 35 H 1.09005 * 109.46801 * 32.50026 * 8 6 5 36 36 H 0.96999 * 119.99757 * 0.02562 * 9 8 6 37 37 H 1.07995 * 120.00723 * 0.02562 * 13 12 10 38 38 H 1.07997 * 119.89205 * 180.02562 * 14 13 12 39 39 H 1.08006 * 119.88791 * 180.29510 * 15 14 13 40 40 H 1.09002 * 109.47152 * 269.71202 * 19 18 17 41 41 H 1.09001 * 109.46980 * 149.71302 * 19 18 17 42 42 H 1.09004 * 109.47113 * 29.71283 * 19 18 17 43 43 H 1.08000 * 126.26875 * 180.25084 * 20 18 17 44 44 H 1.09008 * 109.46744 * 134.97739 * 22 21 20 45 45 H 0.96704 * 113.99985 * 179.97438 * 23 22 21 46 46 H 1.48496 * 110.00042 * 178.67682 * 24 22 21 47 47 H 1.48501 * 109.99941 * 299.99782 * 24 22 21 48 48 H 1.08992 * 109.47784 * 89.97529 * 26 25 21 49 49 H 1.09004 * 109.47075 * 209.97750 * 26 25 21 50 50 H 1.09001 * 109.46985 * 329.97073 * 26 25 21 51 51 H 1.08002 * 120.10167 * 180.29662 * 27 16 15 52 52 H 1.08995 * 113.60915 * 105.38835 * 28 3 2 53 53 H 1.08996 * 113.61153 * 334.48857 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 -0.6953 5 6 2.3003 2.3835 1.4068 6 6 3.5202 3.1752 0.9068 7 1 3.2654 4.1358 0.4593 8 6 4.6472 3.2796 1.9363 9 7 4.4192 4.4454 2.7935 10 6 5.2902 4.7375 3.7797 11 8 6.2652 4.0337 3.9575 12 6 5.0597 5.9138 4.6452 13 6 3.9406 6.7232 4.4434 14 6 3.7277 7.8204 5.2532 15 6 4.6168 8.1184 6.2688 16 6 5.7369 7.3221 6.4739 17 7 6.6388 7.6323 7.5018 18 6 7.9403 8.0095 7.3323 19 6 8.6509 8.1637 6.0124 20 6 8.4781 8.2259 8.5499 21 6 7.4758 7.9687 9.5069 22 6 7.6217 8.0808 11.0026 23 8 7.7086 6.7730 11.5720 24 14 9.1683 9.0379 11.4058 25 6 6.3622 7.6051 8.8389 26 6 5.0395 7.2374 9.4604 27 6 5.9597 6.2184 5.6665 28 6 3.7284 2.0519 -0.1228 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.5389 1.6609 2.1873 33 1 1.4451 3.0113 1.6569 34 1 5.6013 3.3887 1.4207 35 1 4.6657 2.3771 2.5474 36 1 3.6409 5.0067 2.6517 37 1 3.2410 6.4906 3.6543 38 1 2.8611 8.4453 5.0960 39 1 4.4425 8.9755 6.9024 40 1 9.1174 7.2174 5.7381 41 1 9.4167 8.9344 6.0999 42 1 7.9326 8.4507 5.2443 43 1 9.4912 8.5393 8.7543 44 1 6.7557 8.5994 11.4142 45 1 7.8046 6.7686 12.5342 46 1 9.3068 9.1829 12.8772 47 1 10.3561 8.3411 10.8501 48 1 4.4263 8.1322 9.5661 49 1 4.5258 6.5182 8.8225 50 1 5.2097 6.7955 10.4422 51 1 6.8273 5.5957 5.8277 52 1 4.0258 2.4119 -1.1076 53 1 4.3572 1.2386 0.2394 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_12335854.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:14 Heat of formation + Delta-G solvation = 40.521342 kcal Electronic energy + Delta-G solvation = -32601.191976 eV Core-core repulsion = 28339.427980 eV Total energy + Delta-G solvation = -4261.763996 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.166 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.90013 -41.37838 -40.06425 -39.25579 -37.81378 -35.79759 -34.40900 -33.75009 -32.43812 -30.75873 -30.16553 -29.90033 -29.23695 -27.25948 -26.73592 -25.38805 -24.74786 -23.73471 -23.55274 -21.97905 -21.12753 -20.65084 -19.99080 -18.76075 -18.46408 -17.78147 -17.51817 -17.33881 -16.94617 -16.78980 -16.51686 -16.24547 -15.82050 -15.55140 -15.41618 -15.18681 -15.10127 -14.88495 -14.87362 -14.66815 -14.28489 -14.24494 -14.14895 -14.04567 -13.77188 -13.66848 -13.54835 -13.51436 -13.46287 -13.22077 -13.16294 -12.92604 -12.82312 -12.60267 -12.51324 -12.34230 -11.93524 -11.90825 -11.82279 -11.37415 -11.19881 -10.79253 -10.49196 -10.36378 -10.31317 -10.09945 -9.52465 -8.85408 -8.72396 -4.87080 -0.43056 -0.05028 0.77155 1.06493 1.39808 1.59782 1.63162 1.64258 1.71597 1.74664 2.01590 2.04853 2.58600 3.34028 3.41391 3.53192 3.61933 3.63329 3.67516 3.68913 3.76868 3.91124 3.94322 3.97482 4.11467 4.14182 4.20173 4.25086 4.30255 4.31017 4.32668 4.39460 4.46216 4.55795 4.59074 4.61616 4.64178 4.69719 4.72157 4.73320 4.74737 4.81038 4.85485 4.94965 4.97173 4.99716 5.01885 5.02811 5.08037 5.14721 5.18458 5.23102 5.32677 5.42241 5.55724 5.94217 6.11708 6.37506 6.45722 6.69723 7.04681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.324 6.324 3 C -0.072 4.072 4 H 0.121 0.879 5 C -0.119 4.119 6 C -0.102 4.102 7 H 0.129 0.871 8 C 0.131 3.869 9 N -0.703 5.703 10 C 0.554 3.446 11 O -0.584 6.584 12 C -0.133 4.133 13 C -0.063 4.063 14 C -0.098 4.098 15 C -0.080 4.080 16 C 0.096 3.904 17 N -0.405 5.405 18 C 0.014 3.986 19 C -0.082 4.082 20 C -0.201 4.201 21 C -0.170 4.170 22 C -0.047 4.047 23 O -0.562 6.562 24 Si 0.770 3.230 25 C 0.039 3.961 26 C -0.081 4.081 27 C -0.070 4.070 28 C -0.105 4.105 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.418 0.582 37 H 0.171 0.829 38 H 0.179 0.821 39 H 0.149 0.851 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.146 0.854 44 H 0.088 0.912 45 H 0.389 0.611 46 H -0.285 1.285 47 H -0.308 1.308 48 H 0.094 0.906 49 H 0.060 0.940 50 H 0.080 0.920 51 H 0.109 0.891 52 H 0.092 0.908 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.938 8.134 -3.789 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.096 6.096 3 C -0.200 4.200 4 H 0.139 0.861 5 C -0.158 4.158 6 C -0.122 4.122 7 H 0.147 0.853 8 C 0.007 3.993 9 N -0.356 5.356 10 C 0.342 3.658 11 O -0.465 6.465 12 C -0.137 4.137 13 C -0.082 4.082 14 C -0.116 4.116 15 C -0.099 4.099 16 C 0.007 3.993 17 N -0.080 5.080 18 C -0.095 4.095 19 C -0.139 4.139 20 C -0.224 4.224 21 C -0.176 4.176 22 C -0.156 4.156 23 O -0.372 6.372 24 Si 0.676 3.324 25 C -0.070 4.070 26 C -0.138 4.138 27 C -0.090 4.090 28 C -0.145 4.145 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.257 0.743 37 H 0.189 0.811 38 H 0.196 0.804 39 H 0.166 0.834 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.163 0.837 44 H 0.105 0.895 45 H 0.239 0.761 46 H -0.212 1.212 47 H -0.236 1.236 48 H 0.112 0.888 49 H 0.079 0.921 50 H 0.099 0.901 51 H 0.127 0.873 52 H 0.111 0.889 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.127 6.452 -4.189 11.190 hybrid contribution -0.645 -0.439 0.874 1.172 sum -8.773 6.013 -3.315 11.140 Atomic orbital electron populations 1.23362 0.91567 1.06995 1.05796 1.87279 1.10605 1.13875 1.97793 1.24753 1.01163 0.91995 1.02134 0.86071 1.23367 0.98863 0.98906 0.94713 1.22693 0.94296 0.99777 0.95466 0.85327 1.21374 0.98903 0.87631 0.91388 1.45703 1.27339 1.30234 1.32280 1.18495 0.82314 0.84344 0.80630 1.90805 1.31197 1.52696 1.71832 1.19713 0.98260 0.97609 0.98083 1.21808 0.94541 0.92857 0.98975 1.21484 0.99866 0.97131 0.93133 1.21690 0.92219 0.98028 0.98012 1.17683 0.93224 0.96577 0.91807 1.41481 1.09080 1.53066 1.04378 1.20724 0.83988 1.06976 0.97768 1.20363 0.99847 1.03113 0.90612 1.20766 0.99810 1.10513 0.91343 1.18765 0.93939 1.11311 0.93590 1.24233 1.11121 0.88989 0.91272 1.86599 1.95723 1.28025 1.26825 0.93998 0.73831 0.86871 0.77697 1.20622 0.98754 1.06317 0.81338 1.20366 0.90609 1.02326 1.00527 1.21110 0.98980 0.94655 0.94266 1.22796 0.93161 0.97879 1.00644 0.88070 0.89527 0.89518 0.90090 0.88807 0.91849 0.92575 0.74264 0.81125 0.80356 0.83357 0.91688 0.88259 0.91486 0.83650 0.89454 0.76095 1.21192 1.23567 0.88781 0.92114 0.90087 0.87289 0.88930 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.37 10.76 113.37 1.22 1.59 16 2 S -0.32 -0.66 22.18 -56.49 -1.25 -1.92 16 3 C -0.07 0.31 4.27 31.12 0.13 0.45 16 4 H 0.12 -0.86 8.14 -2.39 -0.02 -0.88 16 5 C -0.12 0.79 7.22 31.12 0.22 1.01 16 6 C -0.10 0.81 3.75 -10.27 -0.04 0.77 16 7 H 0.13 -1.62 8.14 -2.39 -0.02 -1.64 16 8 C 0.13 -0.27 5.51 86.38 0.48 0.20 16 9 N -0.70 2.40 5.51 -465.97 -2.57 -0.17 16 10 C 0.55 2.78 7.77 86.79 0.67 3.45 16 11 O -0.58 -9.14 16.35 -3.88 -0.06 -9.20 16 12 C -0.13 -0.16 5.87 -20.10 -0.12 -0.28 16 13 C -0.06 0.48 9.54 22.54 0.21 0.70 16 14 C -0.10 0.86 10.02 22.21 0.22 1.08 16 15 C -0.08 0.27 9.71 22.44 0.22 0.49 16 16 C 0.10 0.33 4.66 38.04 0.18 0.51 16 17 N -0.41 -2.82 2.79 -320.37 -0.89 -3.71 16 18 C 0.01 0.11 6.81 41.05 0.28 0.39 16 19 C -0.08 -0.27 9.93 71.24 0.71 0.44 16 20 C -0.20 -1.72 9.27 22.16 0.21 -1.51 16 21 C -0.17 -1.40 5.39 -19.98 -0.11 -1.51 16 22 C -0.05 -0.20 2.49 71.23 0.18 -0.02 16 23 O -0.56 -3.95 12.86 -148.98 -1.92 -5.86 16 24 Si 0.77 2.03 30.84 68.60 2.12 4.15 16 25 C 0.04 0.28 6.81 41.04 0.28 0.56 16 26 C -0.08 -0.15 9.71 71.24 0.69 0.54 16 27 C -0.07 -0.43 9.27 22.65 0.21 -0.22 16 28 C -0.11 0.48 7.23 31.12 0.23 0.70 16 29 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H 0.08 -0.20 7.86 -2.39 -0.02 -0.22 16 33 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 34 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.06 0.13 7.84 -2.38 -0.02 0.11 16 36 H 0.42 -4.76 6.50 -92.71 -0.60 -5.37 16 37 H 0.17 -2.69 6.40 -2.91 -0.02 -2.71 16 38 H 0.18 -2.81 8.06 -2.91 -0.02 -2.84 16 39 H 0.15 -0.87 8.06 -2.91 -0.02 -0.89 16 40 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.07 0.15 7.83 -2.38 -0.02 0.13 16 43 H 0.15 0.96 6.55 -2.91 -0.02 0.94 16 44 H 0.09 -0.05 7.96 -2.38 -0.02 -0.07 16 45 H 0.39 -0.64 8.74 -74.05 -0.65 -1.28 16 46 H -0.28 -1.54 7.11 99.48 0.71 -0.83 16 47 H -0.31 -3.38 7.06 99.48 0.70 -2.68 16 48 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 49 H 0.06 0.13 7.84 -2.39 -0.02 0.12 16 50 H 0.08 0.23 7.87 -2.39 -0.02 0.21 16 51 H 0.11 1.33 7.65 -2.91 -0.02 1.31 16 52 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 53 H 0.08 -0.07 8.06 -2.39 -0.02 -0.09 16 Total: 0.00 -28.18 447.45 1.20 -26.98 By element: Atomic # 1 Polarization: -19.32 SS G_CDS: -0.29 Total: -19.61 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.07 Total: 9.35 kcal Atomic # 7 Polarization: -0.42 SS G_CDS: -3.46 Total: -3.88 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -1.98 Total: -15.06 kcal Atomic # 14 Polarization: 2.03 SS G_CDS: 2.12 Total: 4.15 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -1.25 Total: -1.92 kcal Total: -28.18 1.20 -26.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_12335854.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.503 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds