Wall clock time and date at job start Tue Mar 9 2021 12:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81401 * 102.99894 * 2 1 4 4 H 1.09003 * 112.84895 * 43.80668 * 3 2 1 5 5 C 1.53782 * 113.61356 * 174.99923 * 3 2 1 6 6 C 1.53785 * 87.07918 * 139.98101 * 5 3 2 7 7 H 1.09007 * 113.61108 * 89.12044 * 6 5 3 8 8 C 1.52998 * 113.61413 * 219.93183 * 6 5 3 9 9 N 1.46503 * 109.47186 * 185.00149 * 8 6 5 10 10 C 1.34774 * 120.00025 * 180.02562 * 9 8 6 11 11 O 1.21586 * 120.00070 * 359.97438 * 10 9 8 12 12 C 1.47573 * 120.00067 * 180.02562 * 10 9 8 13 13 C 1.40198 * 120.19344 * 179.97438 * 12 10 9 14 14 N 1.39662 * 120.15646 * 0.02562 * 13 12 10 15 15 C 1.36652 * 125.68059 * 270.01982 * 14 13 12 16 16 C 1.50698 * 125.90310 * 0.02562 * 15 14 13 17 17 C 1.34805 * 108.19541 * 179.97438 * 15 14 13 18 18 C 1.40992 * 107.48703 * 0.02562 * 17 15 14 19 19 C 1.50696 * 126.26097 * 179.97438 * 18 17 15 20 20 O 1.42901 * 109.47401 * 255.03088 * 19 18 17 21 21 Si 1.86307 * 109.46912 * 15.02465 * 19 18 17 22 22 C 1.34808 * 107.48396 * 359.73270 * 18 17 15 23 23 C 1.50704 * 125.90594 * 180.28928 * 22 18 17 24 24 C 1.38765 * 119.69060 * 180.02562 * 13 12 10 25 25 C 1.38076 * 120.07087 * 0.02562 * 24 13 12 26 26 C 1.38528 * 120.39694 * 359.97438 * 25 24 13 27 27 C 1.37835 * 120.30618 * 359.71746 * 26 25 24 28 28 C 1.53781 * 87.08238 * 334.56849 * 6 5 3 29 29 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46975 * 59.99980 * 1 2 3 31 31 H 1.09004 * 109.47147 * 299.99944 * 1 2 3 32 32 H 1.08997 * 113.61318 * 254.52657 * 5 3 2 33 33 H 1.09000 * 113.61241 * 25.35243 * 5 3 2 34 34 H 1.09000 * 109.47465 * 305.00322 * 8 6 5 35 35 H 1.08999 * 109.47097 * 65.00201 * 8 6 5 36 36 H 0.96999 * 119.99733 * 0.02562 * 9 8 6 37 37 H 1.09000 * 109.47335 * 89.99564 * 16 15 14 38 38 H 1.09004 * 109.47439 * 209.99406 * 16 15 14 39 39 H 1.08998 * 109.47085 * 330.00028 * 16 15 14 40 40 H 1.08000 * 126.26219 * 180.02562 * 17 15 14 41 41 H 1.08997 * 109.47202 * 135.02737 * 19 18 17 42 42 H 0.96701 * 114.00032 * 59.99407 * 20 19 18 43 43 H 1.48500 * 109.99431 * 58.68313 * 21 19 18 44 44 H 1.48498 * 109.99931 * 179.97438 * 21 19 18 45 45 H 1.09002 * 109.47156 * 270.16045 * 23 22 18 46 46 H 1.08997 * 109.46949 * 30.15578 * 23 22 18 47 47 H 1.08995 * 109.47213 * 150.15897 * 23 22 18 48 48 H 1.07999 * 119.96352 * 180.02562 * 24 13 12 49 49 H 1.08003 * 119.79640 * 179.97438 * 25 24 13 50 50 H 1.07997 * 119.84605 * 179.97438 * 26 25 24 51 51 H 1.08003 * 120.03822 * 180.27554 * 27 26 25 52 52 H 1.09002 * 113.61354 * 270.88354 * 28 6 5 53 53 H 1.09000 * 113.61363 * 139.97714 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7284 2.0520 0.1228 6 6 3.5206 3.1738 -0.9084 7 1 3.2643 4.1349 -0.4623 8 6 4.6489 3.2780 -1.9364 9 7 4.4209 4.4426 -2.7954 10 6 5.2930 4.7343 -3.7807 11 8 6.2692 4.0311 -3.9564 12 6 5.0637 5.9078 -4.6456 13 6 5.9685 6.2152 -5.6715 14 7 7.0916 5.4118 -5.8805 15 6 8.3149 5.5845 -5.2965 16 6 8.6821 6.6710 -4.3189 17 6 9.1363 4.6142 -5.7450 18 6 8.3967 3.8126 -6.6385 19 6 8.9063 2.6068 -7.3851 20 8 9.1184 2.9499 -8.7560 21 14 10.5135 2.0427 -6.6304 22 6 7.1487 4.3188 -6.6987 23 6 6.0134 3.7750 -7.5274 24 6 5.7430 7.3215 -6.4782 25 6 4.6323 8.1149 -6.2698 26 6 3.7362 7.8142 -5.2571 27 6 3.9412 6.7156 -4.4504 28 6 2.3008 2.3816 -1.4077 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 4.0256 2.4134 1.1072 33 1 4.3572 1.2376 -0.2368 34 1 5.6022 3.3886 -1.4197 35 1 4.6690 2.3749 -2.5465 36 1 3.6423 5.0039 -2.6549 37 1 8.4836 6.3284 -3.3034 38 1 9.7407 6.9096 -4.4214 39 1 8.0874 7.5610 -4.5248 40 1 10.1716 4.4760 -5.4703 41 1 8.1728 1.8031 -7.3210 42 1 9.7609 3.6604 -8.8888 43 1 10.3130 1.7132 -5.1963 44 1 11.0262 0.8537 -7.3573 45 1 6.0238 4.2450 -8.5108 46 1 6.1288 2.6969 -7.6387 47 1 5.0666 3.9899 -7.0320 48 1 6.4369 7.5621 -7.2700 49 1 4.4613 8.9751 -6.9001 50 1 2.8706 8.4411 -5.1017 51 1 3.2374 6.4826 -3.6650 52 1 2.5394 1.6578 -2.1871 53 1 1.4456 3.0090 -1.6588 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_12335856.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:18 Heat of formation + Delta-G solvation = 49.801330 kcal Electronic energy + Delta-G solvation = -34345.304016 eV Core-core repulsion = 30083.942430 eV Total energy + Delta-G solvation = -4261.361585 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.166 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.85096 -41.12212 -40.05708 -39.19988 -37.66524 -35.72703 -34.13786 -33.58175 -32.64026 -30.46375 -30.13186 -29.94411 -29.26458 -27.19651 -26.78852 -25.28562 -24.60275 -24.01852 -23.32152 -21.85559 -21.02964 -20.66468 -20.24194 -18.97918 -17.83894 -17.73401 -17.46227 -17.15192 -16.83299 -16.55889 -16.31546 -16.11826 -15.93115 -15.73486 -15.28020 -15.23031 -14.91472 -14.89122 -14.71490 -14.51449 -14.38135 -14.27043 -14.15866 -14.07794 -13.99625 -13.58990 -13.57273 -13.50734 -13.39092 -13.23659 -13.06352 -12.91111 -12.85616 -12.76716 -12.38509 -12.16737 -11.95717 -11.84433 -11.75632 -11.41940 -11.04138 -10.82674 -10.35392 -10.33737 -10.12213 -10.00621 -9.51272 -8.76483 -8.66760 -4.98387 -0.41700 0.05023 0.72955 1.20924 1.42479 1.60038 1.69653 1.74766 1.89622 1.96528 1.99335 2.04880 2.61076 3.30872 3.37039 3.53231 3.61210 3.63402 3.69608 3.72895 3.77914 3.96788 4.05725 4.09523 4.15726 4.20791 4.24765 4.26849 4.27178 4.27895 4.30386 4.42095 4.48610 4.53604 4.55330 4.64999 4.67070 4.68766 4.68983 4.70538 4.76458 4.76809 4.81919 4.89992 4.92161 4.97148 5.00722 5.06122 5.18703 5.22089 5.23615 5.29091 5.38966 5.46059 5.64187 6.13387 6.27872 6.40194 6.64599 6.88323 7.11306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.324 6.324 3 C -0.070 4.070 4 H 0.122 0.878 5 C -0.105 4.105 6 C -0.102 4.102 7 H 0.127 0.873 8 C 0.139 3.861 9 N -0.710 5.710 10 C 0.541 3.459 11 O -0.551 6.551 12 C -0.145 4.145 13 C 0.142 3.858 14 N -0.391 5.391 15 C 0.030 3.970 16 C -0.076 4.076 17 C -0.202 4.202 18 C -0.209 4.209 19 C -0.035 4.035 20 O -0.558 6.558 21 Si 0.791 3.209 22 C 0.049 3.951 23 C -0.072 4.072 24 C -0.122 4.122 25 C -0.077 4.077 26 C -0.107 4.107 27 C -0.075 4.075 28 C -0.118 4.118 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.414 0.586 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.155 0.845 41 H 0.085 0.915 42 H 0.392 0.608 43 H -0.306 1.306 44 H -0.296 1.296 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.052 0.948 48 H 0.136 0.864 49 H 0.164 0.836 50 H 0.170 0.830 51 H 0.162 0.838 52 H 0.079 0.921 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.773 10.345 2.406 12.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.096 6.096 3 C -0.198 4.198 4 H 0.140 0.860 5 C -0.144 4.144 6 C -0.122 4.122 7 H 0.145 0.855 8 C 0.015 3.985 9 N -0.364 5.364 10 C 0.328 3.672 11 O -0.429 6.429 12 C -0.149 4.149 13 C 0.052 3.948 14 N -0.065 5.065 15 C -0.079 4.079 16 C -0.134 4.134 17 C -0.226 4.226 18 C -0.216 4.216 19 C -0.146 4.146 20 O -0.366 6.366 21 Si 0.699 3.301 22 C -0.061 4.061 23 C -0.129 4.129 24 C -0.141 4.141 25 C -0.095 4.095 26 C -0.124 4.124 27 C -0.094 4.094 28 C -0.157 4.157 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.252 0.748 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.172 0.828 41 H 0.103 0.897 42 H 0.241 0.759 43 H -0.234 1.234 44 H -0.224 1.224 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.154 0.846 49 H 0.182 0.818 50 H 0.188 0.812 51 H 0.180 0.820 52 H 0.097 0.903 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.715 7.987 2.690 10.183 hybrid contribution -1.685 0.426 0.248 1.755 sum -7.400 8.413 2.938 11.583 Atomic orbital electron populations 1.23367 0.91470 1.07044 1.05808 1.87288 1.10698 1.13786 1.97791 1.24730 1.01058 0.92053 1.01974 0.86003 1.22783 0.93228 0.97823 1.00601 1.22681 0.94350 0.99672 0.95505 0.85535 1.21234 0.98529 0.87575 0.91189 1.45734 1.27489 1.30363 1.32787 1.18498 0.82907 0.84805 0.80956 1.90917 1.29698 1.51576 1.70680 1.20227 0.98331 0.98131 0.98257 1.17852 0.87739 0.92869 0.96332 1.41013 1.07747 1.22411 1.35377 1.20545 0.84264 1.01607 1.01451 1.20283 1.03399 0.94150 0.95551 1.20644 1.00190 0.98015 1.03738 1.19599 0.94486 1.01702 1.05814 1.24367 1.08800 0.96056 0.85367 1.86401 1.67184 1.59784 1.23213 0.93704 0.80038 0.81769 0.74621 1.20205 0.96958 0.90792 0.98110 1.20162 0.93731 1.00902 0.98121 1.21474 0.99651 0.93700 0.99228 1.21700 0.91838 0.98850 0.97137 1.21692 1.00295 0.96541 0.93884 1.21624 0.94559 0.93578 0.99604 1.23341 0.98786 0.98857 0.94746 0.87993 0.89573 0.89442 0.88925 0.90440 0.92403 0.93191 0.74796 0.92323 0.88337 0.91709 0.82810 0.89726 0.75906 1.23360 1.22401 0.90335 0.91195 0.92928 0.84624 0.81841 0.81217 0.82044 0.90289 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.28 10.76 113.37 1.22 1.49 16 2 S -0.32 -1.02 22.17 -56.49 -1.25 -2.27 16 3 C -0.07 0.21 4.28 31.12 0.13 0.35 16 4 H 0.12 -0.73 8.14 -2.39 -0.02 -0.75 16 5 C -0.11 0.31 7.23 31.12 0.22 0.53 16 6 C -0.10 0.62 3.75 -10.27 -0.04 0.58 16 7 H 0.13 -1.34 8.14 -2.38 -0.02 -1.36 16 8 C 0.14 0.00 5.51 86.38 0.48 0.48 16 9 N -0.71 1.00 5.51 -466.23 -2.57 -1.57 16 10 C 0.54 3.30 7.77 86.71 0.67 3.98 16 11 O -0.55 -8.48 13.68 -3.99 -0.05 -8.53 16 12 C -0.15 -0.28 5.89 -19.99 -0.12 -0.40 16 13 C 0.14 0.63 4.52 38.50 0.17 0.80 16 14 N -0.39 -3.53 1.45 -319.54 -0.46 -4.00 16 15 C 0.03 0.27 6.00 41.02 0.25 0.52 16 16 C -0.08 -0.26 10.09 71.24 0.72 0.45 16 17 C -0.20 -1.89 9.27 22.16 0.21 -1.69 16 18 C -0.21 -2.31 5.35 -19.98 -0.11 -2.41 16 19 C -0.04 -0.32 2.61 71.23 0.19 -0.14 16 20 O -0.56 -4.17 12.88 -148.98 -1.92 -6.09 16 21 Si 0.79 5.23 30.81 68.60 2.11 7.34 16 22 C 0.05 0.56 5.99 41.02 0.25 0.81 16 23 C -0.07 -0.62 9.87 71.24 0.70 0.09 16 24 C -0.12 0.09 9.96 22.36 0.22 0.31 16 25 C -0.08 0.52 10.03 22.30 0.22 0.75 16 26 C -0.11 0.96 10.02 22.24 0.22 1.18 16 27 C -0.07 0.48 9.54 22.52 0.21 0.69 16 28 C -0.12 0.58 7.22 31.12 0.22 0.81 16 29 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H 0.08 0.08 8.06 -2.39 -0.02 0.06 16 34 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.05 0.25 7.85 -2.39 -0.02 0.23 16 36 H 0.41 -3.60 6.50 -92.71 -0.60 -4.20 16 37 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.10 -0.05 8.14 -2.38 -0.02 -0.07 16 39 H 0.06 0.12 7.83 -2.39 -0.02 0.10 16 40 H 0.15 0.72 6.59 -2.91 -0.02 0.70 16 41 H 0.09 1.01 7.49 -2.39 -0.02 0.99 16 42 H 0.39 -0.21 8.70 -74.06 -0.64 -0.86 16 43 H -0.31 -4.34 7.11 99.48 0.71 -3.63 16 44 H -0.30 -3.51 7.11 99.48 0.71 -2.81 16 45 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.07 0.67 7.49 -2.39 -0.02 0.65 16 47 H 0.05 0.44 7.83 -2.39 -0.02 0.42 16 48 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 49 H 0.16 -1.97 8.06 -2.91 -0.02 -1.99 16 50 H 0.17 -2.58 8.06 -2.91 -0.02 -2.61 16 51 H 0.16 -2.12 6.40 -2.91 -0.02 -2.13 16 52 H 0.08 -0.04 7.86 -2.39 -0.02 -0.06 16 53 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 Total: 0.00 -26.47 442.71 1.62 -24.85 By element: Atomic # 1 Polarization: -18.63 SS G_CDS: -0.29 Total: -18.91 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.05 Total: 9.18 kcal Atomic # 7 Polarization: -2.53 SS G_CDS: -3.03 Total: -5.56 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -1.97 Total: -14.62 kcal Atomic # 14 Polarization: 5.23 SS G_CDS: 2.11 Total: 7.34 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -1.25 Total: -2.27 kcal Total: -26.47 1.62 -24.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_12335856.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.647 kcal (2) G-P(sol) polarization free energy of solvation -26.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds