Wall clock time and date at job start Tue Mar 9 2021 12:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81403 * 103.00011 * 2 1 4 4 H 1.09004 * 112.85071 * 316.19966 * 3 2 1 5 5 C 1.53958 * 113.74271 * 87.40163 * 3 2 1 6 6 C 1.53776 * 87.01973 * 139.94580 * 5 3 2 7 7 H 1.09006 * 113.61535 * 89.23007 * 6 5 3 8 8 C 1.53000 * 113.61659 * 220.05066 * 6 5 3 9 9 N 1.46504 * 109.47118 * 274.13693 * 8 6 5 10 10 C 1.34770 * 119.99812 * 179.97438 * 9 8 6 11 11 O 1.21697 * 120.00396 * 359.97438 * 10 9 8 12 12 C 1.46437 * 119.99678 * 180.02562 * 10 9 8 13 13 C 1.34806 * 119.99594 * 180.02562 * 12 10 9 14 14 C 1.47216 * 119.99743 * 180.02562 * 13 12 10 15 15 C 1.39836 * 120.16612 * 0.27230 * 14 13 12 16 16 C 1.37893 * 119.82406 * 180.27499 * 15 14 13 17 17 C 1.38403 * 120.16807 * 359.44935 * 16 15 14 18 18 C 1.50701 * 119.82534 * 180.30057 * 17 16 15 19 19 O 1.42906 * 109.47291 * 65.00439 * 18 17 16 20 20 Si 1.86306 * 109.47059 * 184.99948 * 18 17 16 21 21 C 1.38404 * 120.34880 * 0.27992 * 17 16 15 22 22 C 1.37897 * 120.16570 * 359.97438 * 21 17 16 23 23 C 1.53777 * 113.61893 * 185.00159 * 3 2 1 24 24 H 1.08997 * 109.47551 * 60.00155 * 1 2 3 25 25 H 1.09003 * 109.47157 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47196 * 299.99430 * 1 2 3 27 27 H 1.09006 * 113.60899 * 25.42522 * 5 3 2 28 28 H 1.08999 * 113.66815 * 254.47522 * 5 3 2 29 29 H 1.08999 * 109.47251 * 154.14004 * 8 6 5 30 30 H 1.08999 * 109.46890 * 34.13407 * 8 6 5 31 31 H 0.96995 * 119.99391 * 359.97438 * 9 8 6 32 32 H 1.07996 * 120.00126 * 359.97438 * 12 10 9 33 33 H 1.07996 * 120.00806 * 0.02562 * 13 12 10 34 34 H 1.08004 * 120.09330 * 0.02562 * 15 14 13 35 35 H 1.08002 * 119.91884 * 179.73352 * 16 15 14 36 36 H 1.08994 * 109.47276 * 305.00268 * 18 17 16 37 37 H 0.96697 * 113.99431 * 59.99287 * 19 18 17 38 38 H 1.48496 * 110.00125 * 179.97438 * 20 18 17 39 39 H 1.48495 * 110.00053 * 301.32217 * 20 18 17 40 40 H 1.07992 * 119.92001 * 180.02562 * 21 17 16 41 41 H 1.08003 * 120.08187 * 180.02562 * 22 21 17 42 42 H 1.08998 * 113.61420 * 105.38379 * 23 3 2 43 43 H 1.09001 * 113.61321 * 334.48443 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6108 2.3431 -0.6953 5 6 2.2992 2.3859 1.4078 6 6 3.5201 3.1753 0.9067 7 1 3.2652 4.1360 0.4592 8 6 4.6472 3.2797 1.9361 9 7 4.3999 4.4242 2.8166 10 6 5.2675 4.7124 3.8068 11 8 6.2561 4.0217 3.9699 12 6 5.0200 5.8561 4.6872 13 6 5.8881 6.1447 5.6773 14 6 5.6391 7.2942 6.5627 15 6 4.5003 8.0855 6.3834 16 6 4.2769 9.1639 7.2132 17 6 5.1704 9.4570 8.2287 18 6 4.9152 10.6333 9.1354 19 8 3.7287 10.3994 9.8968 20 14 6.3607 10.8526 10.2901 21 6 6.2970 8.6751 8.4162 22 6 6.5369 7.5965 7.5912 23 6 3.7282 2.0521 -0.1228 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 2.5367 1.6640 2.1893 28 1 1.4447 3.0150 1.6569 29 1 5.5981 3.4162 1.4212 30 1 4.6831 2.3660 2.5294 31 1 3.6118 4.9745 2.6868 32 1 4.1425 6.4689 4.5427 33 1 6.7663 5.5328 5.8211 34 1 3.7995 7.8552 5.5945 35 1 3.4000 9.7787 7.0734 36 1 4.7898 11.5343 8.5350 37 1 3.7693 9.6115 10.4560 38 1 6.1216 12.0100 11.1892 39 1 6.5619 9.6190 11.0919 40 1 6.9894 8.9098 9.2109 41 1 7.4162 6.9870 7.7390 42 1 4.0257 2.4121 -1.1077 43 1 4.3572 1.2389 0.2394 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_12360594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:30 Heat of formation + Delta-G solvation = -2.097545 kcal Electronic energy + Delta-G solvation = -22678.290728 eV Core-core repulsion = 19203.169687 eV Total energy + Delta-G solvation = -3475.121041 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.123 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.00480 -40.61252 -39.73964 -37.93278 -35.52014 -35.07956 -32.18588 -31.60200 -30.04707 -29.48228 -27.08653 -26.85805 -24.70487 -24.07254 -23.35415 -21.98487 -21.04021 -20.23658 -18.67705 -18.51453 -17.75267 -16.99680 -16.87697 -16.77950 -16.33238 -16.31275 -16.11834 -15.85740 -15.39099 -15.07506 -14.81270 -14.80349 -14.53940 -14.28819 -14.16914 -14.01621 -13.86843 -13.62287 -13.55204 -13.52783 -12.95442 -12.88648 -12.28908 -12.13671 -12.02572 -11.86985 -11.65864 -11.50626 -11.36092 -10.93675 -10.80988 -10.66146 -10.09078 -10.07134 -9.31013 -8.66610 -5.01245 -0.58880 0.30325 0.70900 0.88275 1.21941 1.53852 1.56216 1.91132 2.16956 2.29772 2.74890 3.26394 3.29268 3.30679 3.47051 3.53281 3.62817 3.64500 3.68360 3.84614 4.00997 4.08692 4.15205 4.16058 4.18276 4.21629 4.23782 4.39390 4.46793 4.52681 4.59815 4.64069 4.71909 4.74686 4.80042 4.83538 4.86410 4.92819 5.01582 5.08129 5.21561 5.31352 5.38083 5.43594 5.55295 5.80540 6.32339 6.49583 7.25373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.254 6.254 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.123 4.123 6 C -0.121 4.121 7 H 0.101 0.899 8 C 0.130 3.870 9 N -0.726 5.726 10 C 0.546 3.454 11 O -0.543 6.543 12 C -0.214 4.214 13 C -0.016 4.016 14 C -0.072 4.072 15 C -0.100 4.100 16 C -0.094 4.094 17 C -0.106 4.106 18 C -0.077 4.077 19 O -0.529 6.529 20 Si 0.686 3.314 21 C -0.120 4.120 22 C -0.088 4.088 23 C -0.100 4.100 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.402 0.598 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.376 0.624 38 H -0.256 1.256 39 H -0.260 1.260 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.083 0.917 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.900 2.896 -1.762 3.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.025 6.025 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.163 4.163 6 C -0.141 4.141 7 H 0.119 0.881 8 C 0.007 3.993 9 N -0.377 5.377 10 C 0.335 3.665 11 O -0.422 6.422 12 C -0.234 4.234 13 C -0.036 4.036 14 C -0.072 4.072 15 C -0.118 4.118 16 C -0.112 4.112 17 C -0.106 4.106 18 C -0.187 4.187 19 O -0.335 6.335 20 Si 0.588 3.412 21 C -0.138 4.138 22 C -0.106 4.106 23 C -0.139 4.139 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.096 0.904 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.236 0.764 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.224 0.776 38 H -0.181 1.181 39 H -0.185 1.185 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.101 0.899 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.474 2.021 -1.163 2.379 hybrid contribution -2.338 0.549 0.162 2.407 sum -2.812 2.570 -1.001 3.939 Atomic orbital electron populations 1.23371 0.94139 1.06639 1.04922 1.86998 1.07552 1.10340 1.97621 1.24713 1.01077 0.94310 1.01207 0.87622 1.23441 0.98097 0.99121 0.95625 1.22760 0.95707 0.98943 0.96728 0.88094 1.21364 0.97991 0.89111 0.90876 1.45848 1.26978 1.31996 1.32860 1.18333 0.82731 0.84809 0.80580 1.90844 1.28276 1.51544 1.71523 1.22895 1.02362 0.99458 0.98701 1.22414 0.97632 0.92740 0.90830 1.19078 0.95772 0.95852 0.96510 1.21466 0.96562 0.94596 0.99185 1.20977 0.99039 0.97077 0.94145 1.20458 0.95425 0.97406 0.97349 1.25070 0.97102 0.98327 0.98216 1.86613 1.36337 1.50169 1.60395 0.94915 0.83543 0.80899 0.81884 1.21029 0.97142 0.95545 1.00062 1.21357 0.98801 0.96704 0.93738 1.22759 0.93345 0.97925 0.99912 0.90493 0.88058 0.90435 0.88423 0.90838 0.90955 0.90888 0.76431 0.85261 0.84397 0.85263 0.85268 0.86252 0.77586 1.18140 1.18471 0.85155 0.84843 0.89850 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.14 10.76 101.05 1.09 1.23 16 2 S -0.25 -0.24 22.19 -107.50 -2.39 -2.63 16 3 C -0.08 0.12 4.27 -25.83 -0.11 0.00 16 4 H 0.11 -0.21 8.14 -51.93 -0.42 -0.64 16 5 C -0.12 0.27 7.24 -25.83 -0.19 0.09 16 6 C -0.12 0.33 3.75 -89.81 -0.34 0.00 16 7 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 8 C 0.13 -0.10 5.50 -4.04 -0.02 -0.12 16 9 N -0.73 0.71 5.55 -61.70 -0.34 0.37 16 10 C 0.55 1.03 7.74 -12.96 -0.10 0.93 16 11 O -0.54 -3.30 16.23 5.19 0.08 -3.22 16 12 C -0.21 0.08 9.41 -37.50 -0.35 -0.28 16 13 C -0.02 0.00 9.46 -37.15 -0.35 -0.35 16 14 C -0.07 0.01 5.87 -105.06 -0.62 -0.60 16 15 C -0.10 0.08 9.41 -39.11 -0.37 -0.29 16 16 C -0.09 0.04 9.66 -39.65 -0.38 -0.34 16 17 C -0.11 0.06 5.36 -104.50 -0.56 -0.50 16 18 C -0.08 0.07 2.80 36.01 0.10 0.17 16 19 O -0.53 -0.37 12.83 -35.23 -0.45 -0.83 16 20 Si 0.69 -0.96 29.87 -169.99 -5.08 -6.04 16 21 C -0.12 0.11 8.65 -39.65 -0.34 -0.23 16 22 C -0.09 0.06 9.80 -39.11 -0.38 -0.32 16 23 C -0.10 0.18 7.23 -25.92 -0.19 -0.01 16 24 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 25 H 0.10 -0.15 8.14 -51.92 -0.42 -0.58 16 26 H 0.08 -0.14 8.14 -51.92 -0.42 -0.56 16 27 H 0.10 -0.10 7.88 -51.93 -0.41 -0.51 16 28 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 29 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.07 0.04 7.87 -51.93 -0.41 -0.37 16 31 H 0.40 -1.52 8.45 -40.82 -0.35 -1.86 16 32 H 0.13 -0.39 6.07 -52.49 -0.32 -0.71 16 33 H 0.14 0.10 7.52 -52.49 -0.39 -0.29 16 34 H 0.13 -0.35 6.17 -52.48 -0.32 -0.68 16 35 H 0.13 -0.15 8.06 -52.49 -0.42 -0.58 16 36 H 0.12 -0.19 7.96 -51.93 -0.41 -0.60 16 37 H 0.38 -0.76 8.70 45.56 0.40 -0.36 16 38 H -0.26 -0.52 7.11 56.52 0.40 -0.12 16 39 H -0.26 -0.13 7.00 56.52 0.40 0.26 16 40 H 0.13 -0.32 4.81 -52.49 -0.25 -0.57 16 41 H 0.13 -0.31 8.06 -52.48 -0.42 -0.73 16 42 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 43 H 0.10 -0.08 8.06 -51.93 -0.42 -0.50 16 LS Contribution 372.43 15.07 5.61 5.61 Total: 0.00 -7.80 372.43 -11.99 -19.79 By element: Atomic # 1 Polarization: -6.11 SS G_CDS: -6.32 Total: -12.43 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -3.11 Total: -0.63 kcal Atomic # 7 Polarization: 0.71 SS G_CDS: -0.34 Total: 0.37 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.37 Total: -4.05 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: -5.08 Total: -6.04 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.39 Total: -2.63 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -7.80 -11.99 -19.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_12360594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.693 kcal (2) G-P(sol) polarization free energy of solvation -7.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds