Wall clock time and date at job start Tue Mar 9 2021 12:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81403 * 103.00011 * 2 1 4 4 H 1.09004 * 112.85071 * 316.19966 * 3 2 1 5 5 C 1.53958 * 113.74271 * 87.40163 * 3 2 1 6 6 C 1.53776 * 87.01973 * 139.94580 * 5 3 2 7 7 H 1.09006 * 113.61535 * 89.23007 * 6 5 3 8 8 C 1.53000 * 113.61659 * 220.05066 * 6 5 3 9 9 N 1.46504 * 109.47118 * 274.13693 * 8 6 5 10 10 C 1.34770 * 119.99812 * 179.97438 * 9 8 6 11 11 O 1.21697 * 120.00396 * 359.97438 * 10 9 8 12 12 C 1.46437 * 119.99678 * 180.02562 * 10 9 8 13 13 C 1.34806 * 119.99594 * 180.02562 * 12 10 9 14 14 C 1.47216 * 119.99743 * 180.02562 * 13 12 10 15 15 C 1.39836 * 120.16612 * 0.27230 * 14 13 12 16 16 C 1.37893 * 119.82406 * 180.27499 * 15 14 13 17 17 C 1.38403 * 120.16807 * 359.44935 * 16 15 14 18 18 C 1.50701 * 119.82534 * 180.30057 * 17 16 15 19 19 O 1.42906 * 109.47291 * 65.00439 * 18 17 16 20 20 Si 1.86306 * 109.47059 * 184.99948 * 18 17 16 21 21 C 1.38404 * 120.34880 * 0.27992 * 17 16 15 22 22 C 1.37897 * 120.16570 * 359.97438 * 21 17 16 23 23 C 1.53777 * 113.61893 * 185.00159 * 3 2 1 24 24 H 1.08997 * 109.47551 * 60.00155 * 1 2 3 25 25 H 1.09003 * 109.47157 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47196 * 299.99430 * 1 2 3 27 27 H 1.09006 * 113.60899 * 25.42522 * 5 3 2 28 28 H 1.08999 * 113.66815 * 254.47522 * 5 3 2 29 29 H 1.08999 * 109.47251 * 154.14004 * 8 6 5 30 30 H 1.08999 * 109.46890 * 34.13407 * 8 6 5 31 31 H 0.96995 * 119.99391 * 359.97438 * 9 8 6 32 32 H 1.07996 * 120.00126 * 359.97438 * 12 10 9 33 33 H 1.07996 * 120.00806 * 0.02562 * 13 12 10 34 34 H 1.08004 * 120.09330 * 0.02562 * 15 14 13 35 35 H 1.08002 * 119.91884 * 179.73352 * 16 15 14 36 36 H 1.08994 * 109.47276 * 305.00268 * 18 17 16 37 37 H 0.96697 * 113.99431 * 59.99287 * 19 18 17 38 38 H 1.48496 * 110.00125 * 179.97438 * 20 18 17 39 39 H 1.48495 * 110.00053 * 301.32217 * 20 18 17 40 40 H 1.07992 * 119.92001 * 180.02562 * 21 17 16 41 41 H 1.08003 * 120.08187 * 180.02562 * 22 21 17 42 42 H 1.08998 * 113.61420 * 105.38379 * 23 3 2 43 43 H 1.09001 * 113.61321 * 334.48443 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6108 2.3431 -0.6953 5 6 2.2992 2.3859 1.4078 6 6 3.5201 3.1753 0.9067 7 1 3.2652 4.1360 0.4592 8 6 4.6472 3.2797 1.9361 9 7 4.3999 4.4242 2.8166 10 6 5.2675 4.7124 3.8068 11 8 6.2561 4.0217 3.9699 12 6 5.0200 5.8561 4.6872 13 6 5.8881 6.1447 5.6773 14 6 5.6391 7.2942 6.5627 15 6 4.5003 8.0855 6.3834 16 6 4.2769 9.1639 7.2132 17 6 5.1704 9.4570 8.2287 18 6 4.9152 10.6333 9.1354 19 8 3.7287 10.3994 9.8968 20 14 6.3607 10.8526 10.2901 21 6 6.2970 8.6751 8.4162 22 6 6.5369 7.5965 7.5912 23 6 3.7282 2.0521 -0.1228 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 2.5367 1.6640 2.1893 28 1 1.4447 3.0150 1.6569 29 1 5.5981 3.4162 1.4212 30 1 4.6831 2.3660 2.5294 31 1 3.6118 4.9745 2.6868 32 1 4.1425 6.4689 4.5427 33 1 6.7663 5.5328 5.8211 34 1 3.7995 7.8552 5.5945 35 1 3.4000 9.7787 7.0734 36 1 4.7898 11.5343 8.5350 37 1 3.7693 9.6115 10.4560 38 1 6.1216 12.0100 11.1892 39 1 6.5619 9.6190 11.0919 40 1 6.9894 8.9098 9.2109 41 1 7.4162 6.9870 7.7390 42 1 4.0257 2.4121 -1.1077 43 1 4.3572 1.2389 0.2394 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_12360594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:29 Heat of formation + Delta-G solvation = 1.451767 kcal Electronic energy + Delta-G solvation = -22678.136818 eV Core-core repulsion = 19203.169687 eV Total energy + Delta-G solvation = -3474.967131 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.123 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.03212 -40.53855 -39.71318 -37.90500 -35.56664 -35.09546 -32.07982 -31.56686 -29.95696 -29.43052 -27.02098 -26.71675 -24.64477 -23.97052 -23.30999 -21.98486 -20.95026 -20.18172 -18.63082 -18.50958 -17.72607 -16.99692 -16.85275 -16.70275 -16.28963 -16.25578 -16.14913 -15.78860 -15.35980 -15.04139 -14.78558 -14.75701 -14.48940 -14.23425 -14.08533 -13.99547 -13.79717 -13.51116 -13.47857 -13.45509 -12.94926 -12.81500 -12.23752 -12.11168 -11.91039 -11.78633 -11.62012 -11.36804 -11.34353 -11.06554 -10.78910 -10.61649 -10.15837 -9.97018 -9.24513 -8.72241 -4.92972 -0.54637 0.40538 0.77135 0.89364 1.30039 1.58278 1.63787 1.94472 2.18196 2.24091 2.81621 3.37477 3.40880 3.43647 3.56877 3.64120 3.73619 3.78038 3.79559 3.96979 4.13395 4.20371 4.20703 4.29868 4.30814 4.34374 4.36259 4.48903 4.57636 4.61955 4.73958 4.75208 4.82117 4.85247 4.89271 4.95252 4.97505 5.03983 5.10692 5.16243 5.32245 5.39972 5.47412 5.47903 5.61338 5.91103 6.45999 6.53900 7.21332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.321 6.321 3 C -0.073 4.073 4 H 0.119 0.881 5 C -0.118 4.118 6 C -0.103 4.103 7 H 0.124 0.876 8 C 0.132 3.868 9 N -0.709 5.709 10 C 0.539 3.461 11 O -0.595 6.595 12 C -0.209 4.209 13 C -0.021 4.021 14 C -0.081 4.081 15 C -0.101 4.101 16 C -0.104 4.104 17 C -0.109 4.109 18 C -0.082 4.082 19 O -0.547 6.547 20 Si 0.762 3.238 21 C -0.126 4.126 22 C -0.097 4.097 23 C -0.104 4.104 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.418 0.582 32 H 0.161 0.839 33 H 0.125 0.875 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.386 0.614 38 H -0.304 1.304 39 H -0.284 1.284 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.091 0.909 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.166 4.151 -2.452 5.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.092 6.092 3 C -0.201 4.201 4 H 0.137 0.863 5 C -0.158 4.158 6 C -0.123 4.123 7 H 0.142 0.858 8 C 0.008 3.992 9 N -0.360 5.360 10 C 0.329 3.671 11 O -0.478 6.478 12 C -0.230 4.230 13 C -0.041 4.041 14 C -0.081 4.081 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.191 4.191 19 O -0.355 6.355 20 Si 0.668 3.332 21 C -0.143 4.143 22 C -0.115 4.115 23 C -0.144 4.144 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.256 0.744 32 H 0.179 0.821 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.235 0.765 38 H -0.233 1.233 39 H -0.210 1.210 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.110 0.890 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.779 3.276 -1.890 4.180 hybrid contribution -1.957 0.153 0.405 2.005 sum -3.737 3.429 -1.485 5.284 Atomic orbital electron populations 1.23365 0.91647 1.07026 1.05749 1.87236 1.10516 1.13709 1.97785 1.24783 1.01215 0.92057 1.02064 0.86275 1.23375 0.98802 0.98880 0.94730 1.22674 0.94451 0.99577 0.95609 0.85780 1.21304 0.98476 0.88459 0.91011 1.45745 1.26895 1.31682 1.31721 1.18774 0.82279 0.84945 0.81061 1.90820 1.30527 1.53423 1.73007 1.22997 1.03274 0.98837 0.97862 1.22395 0.97468 0.92894 0.91309 1.19130 0.96367 0.95916 0.96711 1.21686 0.96539 0.94115 0.99497 1.21134 0.99343 0.97407 0.94286 1.20521 0.95605 0.97437 0.97412 1.25209 0.96792 0.98705 0.98395 1.86581 1.37187 1.50952 1.60826 0.94044 0.82402 0.76926 0.79802 1.21173 0.97357 0.95435 1.00356 1.21582 0.99237 0.96947 0.93693 1.22786 0.93084 0.97899 1.00612 0.89564 0.87968 0.89607 0.89996 0.89147 0.92073 0.92710 0.74414 0.82138 0.85750 0.83260 0.84640 0.85436 0.76478 1.23291 1.21045 0.84018 0.83820 0.88994 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.30 10.76 113.37 1.22 1.52 16 2 S -0.32 -0.84 22.19 -56.49 -1.25 -2.10 16 3 C -0.07 0.24 4.27 31.18 0.13 0.37 16 4 H 0.12 -0.69 8.14 -2.38 -0.02 -0.70 16 5 C -0.12 0.62 7.24 31.18 0.23 0.85 16 6 C -0.10 0.67 3.75 -10.27 -0.04 0.63 16 7 H 0.12 -1.29 8.14 -2.38 -0.02 -1.31 16 8 C 0.13 -0.15 5.50 86.38 0.47 0.32 16 9 N -0.71 1.77 5.55 -467.33 -2.59 -0.82 16 10 C 0.54 2.21 7.74 86.38 0.67 2.88 16 11 O -0.59 -8.31 16.23 -4.34 -0.07 -8.39 16 12 C -0.21 0.28 9.41 23.62 0.22 0.50 16 13 C -0.02 -0.01 9.46 23.84 0.23 0.21 16 14 C -0.08 0.07 5.87 -20.15 -0.12 -0.05 16 15 C -0.10 0.29 9.41 22.57 0.21 0.50 16 16 C -0.10 0.20 9.66 22.23 0.21 0.42 16 17 C -0.11 0.19 5.36 -19.79 -0.11 0.09 16 18 C -0.08 0.17 2.80 71.24 0.20 0.37 16 19 O -0.55 -0.65 12.83 -148.98 -1.91 -2.56 16 20 Si 0.76 -2.04 29.87 68.60 2.05 0.01 16 21 C -0.13 0.29 8.65 22.23 0.19 0.49 16 22 C -0.10 0.15 9.80 22.57 0.22 0.37 16 23 C -0.10 0.38 7.23 31.12 0.23 0.60 16 24 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 25 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.08 -0.12 7.88 -2.38 -0.02 -0.14 16 28 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 29 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.05 0.16 7.87 -2.39 -0.02 0.14 16 31 H 0.42 -3.98 8.45 -92.71 -0.78 -4.76 16 32 H 0.16 -1.35 6.07 -2.91 -0.02 -1.37 16 33 H 0.12 0.38 7.52 -2.91 -0.02 0.36 16 34 H 0.15 -1.16 6.17 -2.91 -0.02 -1.18 16 35 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 36 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 37 H 0.39 -1.57 8.70 -74.06 -0.64 -2.22 16 38 H -0.30 -1.64 7.11 99.48 0.71 -0.94 16 39 H -0.28 -0.33 7.00 99.48 0.70 0.36 16 40 H 0.14 -0.76 4.81 -2.91 -0.01 -0.78 16 41 H 0.14 -0.63 8.06 -2.91 -0.02 -0.66 16 42 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H 0.08 -0.02 8.06 -2.39 -0.02 -0.04 16 Total: 0.00 -20.39 372.43 0.02 -20.38 By element: Atomic # 1 Polarization: -16.21 SS G_CDS: -0.37 Total: -16.58 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 4.17 Total: 10.06 kcal Atomic # 7 Polarization: 1.77 SS G_CDS: -2.59 Total: -0.82 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -1.98 Total: -10.94 kcal Atomic # 14 Polarization: -2.04 SS G_CDS: 2.05 Total: 0.01 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -1.25 Total: -2.10 kcal Total: -20.39 0.02 -20.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_12360594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.827 kcal (2) G-P(sol) polarization free energy of solvation -20.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds