Wall clock time and date at job start Tue Mar 9 2021 12:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35660 * 116.99596 * 2 1 4 4 C 1.40144 * 120.14418 * 180.02562 * 3 2 1 5 5 C 1.47531 * 120.19037 * 0.04510 * 4 3 2 6 6 O 1.21588 * 120.00417 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99860 * 179.97438 * 5 4 3 8 8 C 1.46495 * 120.00035 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46951 * 180.02562 * 8 7 5 10 10 H 1.08998 * 112.84721 * 316.18891 * 9 8 7 11 11 C 1.53782 * 113.61486 * 87.50075 * 9 8 7 12 12 C 1.53787 * 87.07868 * 139.97871 * 11 9 8 13 13 H 1.09004 * 113.68851 * 89.12490 * 12 11 9 14 14 S 1.81398 * 113.61533 * 220.01386 * 12 11 9 15 15 C 1.81396 * 103.00074 * 272.50258 * 14 12 11 16 16 C 1.53781 * 87.08324 * 334.57026 * 12 11 9 17 17 C 1.39707 * 119.61420 * 180.02562 * 4 3 2 18 18 C 1.37788 * 119.91033 * 359.97438 * 17 4 3 19 19 C 1.50699 * 119.85099 * 180.02562 * 18 17 4 20 20 O 1.42901 * 109.46830 * 300.00212 * 19 18 17 21 21 Si 1.86298 * 109.46950 * 180.02562 * 19 18 17 22 22 C 1.38552 * 120.29591 * 0.27805 * 18 17 4 23 23 C 1.38055 * 120.39254 * 359.44677 * 22 18 17 24 24 H 1.08999 * 109.47333 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46813 * 300.00307 * 1 2 3 26 26 H 1.08997 * 109.47287 * 59.99350 * 1 2 3 27 27 H 0.97004 * 119.99713 * 0.02562 * 7 5 4 28 28 H 1.09002 * 109.47340 * 299.99370 * 8 7 5 29 29 H 1.09000 * 109.47441 * 60.00323 * 8 7 5 30 30 H 1.08997 * 113.61531 * 254.52882 * 11 9 8 31 31 H 1.09001 * 113.61295 * 25.43491 * 11 9 8 32 32 H 1.08996 * 109.47069 * 60.00103 * 15 14 12 33 33 H 1.09001 * 109.46739 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.47142 * 299.99493 * 15 14 12 35 35 H 1.09009 * 113.60809 * 270.88284 * 16 12 11 36 36 H 1.08992 * 113.69457 * 139.99422 * 16 12 11 37 37 H 1.08001 * 120.04266 * 180.02562 * 17 4 3 38 38 H 1.08991 * 109.47351 * 60.00360 * 19 18 17 39 39 H 0.96708 * 114.00246 * 299.99864 * 20 19 18 40 40 H 1.48506 * 109.99834 * 180.02562 * 21 19 18 41 41 H 1.48502 * 110.00011 * 301.31529 * 21 19 18 42 42 H 1.08010 * 119.79949 * 179.70095 * 22 18 17 43 43 H 1.08000 * 119.95537 * 180.25477 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4442 1.2857 -0.0005 5 6 4.2550 0.0532 -0.0021 6 8 3.7095 -1.0334 -0.0025 7 7 5.6005 0.1317 -0.0032 8 6 6.4057 -1.0921 -0.0053 9 6 7.8911 -0.7253 -0.0055 10 1 8.1279 0.0809 -0.6998 11 6 8.4751 -0.5200 1.4023 12 6 9.7329 -1.2494 0.9012 13 1 10.4750 -0.5869 0.4557 14 16 10.4463 -2.3882 2.1197 15 6 11.5593 -1.3200 3.0739 16 6 8.8256 -1.9402 -0.1305 17 6 4.0668 2.5364 0.0000 18 6 3.3038 3.6838 0.0005 19 6 3.9768 5.0321 0.0005 20 8 4.7927 5.1571 1.1670 21 14 2.6825 6.3721 0.0021 22 6 1.9206 3.6033 0.0063 23 6 1.2924 2.3740 0.0001 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 6.0357 0.9987 -0.0025 28 1 6.1769 -1.6791 0.8842 29 1 6.1754 -1.6770 -0.8958 30 1 8.6484 0.5261 1.6548 31 1 7.9377 -1.0611 2.1811 32 1 10.9847 -0.5176 3.5366 33 1 12.0511 -1.9078 3.8490 34 1 12.3106 -0.8926 2.4099 35 1 8.3840 -2.8696 0.2294 36 1 9.2806 -2.0415 -1.1157 37 1 5.1447 2.6038 -0.0008 38 1 4.5984 5.1280 -0.8896 39 1 4.3046 5.0819 1.9985 40 1 3.3335 7.7069 0.0015 41 1 1.8071 6.2341 -1.1894 42 1 1.3304 4.5079 0.0116 43 1 0.2138 2.3196 0.0006 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_12496546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:34 Heat of formation + Delta-G solvation = -44.829061 kcal Electronic energy + Delta-G solvation = -24980.898593 eV Core-core repulsion = 21313.468523 eV Total energy + Delta-G solvation = -3667.430070 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77892 -40.49875 -39.52111 -39.17703 -37.09368 -35.55869 -32.82799 -31.82222 -29.93761 -29.36371 -28.42676 -26.73467 -26.14055 -25.33541 -23.90893 -22.42352 -21.61579 -20.55349 -19.53010 -18.41165 -18.10745 -17.66421 -17.01454 -16.92430 -16.77058 -16.48055 -16.14179 -16.03778 -15.83745 -15.75369 -15.20345 -14.79343 -14.68786 -14.52937 -14.43495 -14.23878 -14.03854 -13.62679 -13.50980 -13.46247 -13.41358 -13.09045 -12.79814 -12.43450 -12.09554 -12.04329 -11.91083 -11.80196 -11.76728 -11.36769 -11.01399 -10.78645 -10.38554 -10.30644 -10.03852 -9.27943 -8.71709 -4.96850 -0.26336 0.21985 0.77156 1.34884 1.63825 1.65515 1.77913 2.00616 2.09846 2.27521 2.68824 3.37010 3.42420 3.50302 3.58115 3.63452 3.69990 3.75123 3.79324 3.99514 4.15038 4.17444 4.30305 4.30378 4.31489 4.33748 4.36004 4.41220 4.57117 4.60598 4.67684 4.72177 4.74584 4.74951 4.81923 4.85710 4.92936 4.96240 5.02883 5.11434 5.27736 5.30707 5.45704 5.57054 6.30202 6.51162 6.81426 7.20708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.169 3.831 4 C -0.196 4.196 5 C 0.554 3.446 6 O -0.567 6.567 7 N -0.714 5.714 8 C 0.135 3.865 9 C -0.105 4.105 10 H 0.122 0.878 11 C -0.118 4.118 12 C -0.071 4.071 13 H 0.119 0.881 14 S -0.319 6.319 15 C -0.110 4.110 16 C -0.103 4.103 17 C -0.016 4.016 18 C -0.167 4.167 19 C -0.063 4.063 20 O -0.554 6.554 21 Si 0.769 3.231 22 C -0.043 4.043 23 C -0.212 4.212 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.412 0.588 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.151 0.849 38 H 0.113 0.887 39 H 0.396 0.604 40 H -0.302 1.302 41 H -0.284 1.284 42 H 0.157 0.843 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 6.703 1.288 6.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.121 3.879 4 C -0.200 4.200 5 C 0.342 3.658 6 O -0.447 6.447 7 N -0.367 5.367 8 C 0.011 3.989 9 C -0.125 4.125 10 H 0.140 0.860 11 C -0.158 4.158 12 C -0.200 4.200 13 H 0.137 0.863 14 S -0.091 6.091 15 C -0.278 4.278 16 C -0.142 4.142 17 C -0.034 4.034 18 C -0.168 4.168 19 C -0.173 4.173 20 O -0.362 6.362 21 Si 0.676 3.324 22 C -0.061 4.061 23 C -0.230 4.230 24 H 0.125 0.875 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.250 0.750 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.169 0.831 38 H 0.131 0.869 39 H 0.246 0.754 40 H -0.230 1.230 41 H -0.211 1.211 42 H 0.174 0.826 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.521 5.345 0.603 5.590 hybrid contribution 0.655 0.948 -0.496 1.254 sum -0.866 6.293 0.108 6.353 Atomic orbital electron populations 1.23447 0.76535 1.05444 1.02877 1.86342 1.23207 1.26459 1.86573 1.19437 0.91385 0.85560 0.91510 1.19411 0.91137 0.93981 1.15486 1.18343 0.82703 0.88666 0.76066 1.90815 1.72589 1.30440 1.50870 1.45776 1.05083 1.10682 1.75207 1.21300 0.89544 0.86473 1.01568 1.22684 0.91442 0.99688 0.98685 0.86026 1.23352 0.94303 1.01590 0.96524 1.24726 0.98784 0.99143 0.97308 0.86292 1.87216 1.56873 1.23407 1.41565 1.23368 1.00390 1.01840 1.02209 1.22782 0.95133 0.97452 0.98873 1.21094 1.00755 0.89091 0.92500 1.20256 0.93805 0.96020 1.06712 1.25028 1.01971 0.98887 0.91418 1.86468 1.38084 1.95313 1.16288 0.93831 0.77953 0.74067 0.86559 1.21285 0.93752 0.97846 0.93183 1.21470 1.01772 0.90898 1.08890 0.87533 0.90608 0.90989 0.74994 0.92547 0.92165 0.89264 0.89848 0.89609 0.87898 0.89591 0.89992 0.88999 0.83127 0.86942 0.75437 1.23016 1.21079 0.82571 0.82022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.79 8.57 -68.84 -0.59 -3.38 16 3 C 0.17 0.91 6.70 22.84 0.15 1.07 16 4 C -0.20 -1.00 5.89 -20.01 -0.12 -1.12 16 5 C 0.55 5.10 7.76 86.69 0.67 5.78 16 6 O -0.57 -10.47 15.16 16.93 0.26 -10.21 16 7 N -0.71 -1.09 5.51 -466.27 -2.57 -3.65 16 8 C 0.13 0.20 5.51 86.38 0.48 0.68 16 9 C -0.10 0.45 3.75 -10.26 -0.04 0.41 16 10 H 0.12 -0.97 8.14 -2.39 -0.02 -0.99 16 11 C -0.12 0.41 7.22 31.12 0.22 0.64 16 12 C -0.07 0.14 4.28 31.12 0.13 0.28 16 13 H 0.12 -0.53 8.14 -2.38 -0.02 -0.55 16 14 S -0.32 -1.11 22.17 -56.49 -1.25 -2.36 16 15 C -0.11 0.21 10.76 113.37 1.22 1.43 16 16 C -0.10 0.22 7.23 31.12 0.23 0.45 16 17 C -0.02 0.02 9.09 22.52 0.20 0.22 16 18 C -0.17 0.57 5.39 -19.90 -0.11 0.46 16 19 C -0.06 0.31 2.82 71.24 0.20 0.51 16 20 O -0.55 2.49 12.76 -148.98 -1.90 0.59 16 21 Si 0.77 -4.34 29.77 68.60 2.04 -2.30 16 22 C -0.04 0.19 8.66 22.30 0.19 0.38 16 23 C -0.21 0.33 9.03 22.34 0.20 0.54 16 24 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.08 -0.38 7.66 -2.39 -0.02 -0.40 16 26 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 27 H 0.41 -1.94 6.50 -92.71 -0.60 -2.54 16 28 H 0.06 0.29 7.84 -2.39 -0.02 0.27 16 29 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.08 0.00 7.85 -2.39 -0.02 -0.02 16 32 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H 0.08 0.08 8.06 -2.38 -0.02 0.06 16 36 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H 0.15 -0.82 6.40 -2.91 -0.02 -0.84 16 38 H 0.11 -0.49 7.96 -2.39 -0.02 -0.51 16 39 H 0.40 -4.68 8.70 -74.05 -0.64 -5.32 16 40 H -0.30 -0.80 7.11 99.48 0.71 -0.09 16 41 H -0.28 0.31 7.11 99.48 0.71 1.02 16 42 H 0.16 -1.49 4.85 -2.91 -0.01 -1.51 16 43 H 0.16 -1.08 6.30 -2.91 -0.02 -1.10 16 Total: 0.00 -23.83 365.11 0.57 -23.26 By element: Atomic # 1 Polarization: -14.57 SS G_CDS: -0.17 Total: -14.75 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 4.75 Total: 12.81 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -2.57 Total: -3.65 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -2.23 Total: -13.01 kcal Atomic # 14 Polarization: -4.34 SS G_CDS: 2.04 Total: -2.30 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -1.25 Total: -2.36 kcal Total: -23.83 0.57 -23.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_12496546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.565 kcal (2) G-P(sol) polarization free energy of solvation -23.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds