Wall clock time and date at job start Tue Mar 9 2021 12:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81407 * 102.99981 * 2 1 4 4 H 1.09000 * 112.84808 * 316.19687 * 3 2 1 5 5 C 1.53784 * 113.68809 * 87.46279 * 3 2 1 6 6 C 1.53788 * 87.07568 * 139.99124 * 5 3 2 7 7 H 1.08999 * 113.68411 * 89.13205 * 6 5 3 8 8 C 1.52998 * 113.61361 * 220.01580 * 6 5 3 9 9 N 1.46504 * 109.47247 * 272.50393 * 8 6 5 10 10 C 1.34779 * 119.99860 * 179.97438 * 9 8 6 11 11 O 1.21570 * 119.99883 * 359.97438 * 10 9 8 12 12 C 1.47723 * 119.99940 * 179.97438 * 10 9 8 13 13 C 1.39627 * 120.11977 * 180.02562 * 12 10 9 14 14 C 1.37856 * 119.88168 * 179.97438 * 13 12 10 15 15 C 1.50704 * 119.94242 * 180.29596 * 14 13 12 16 16 O 1.42907 * 109.47100 * 254.72791 * 15 14 13 17 17 Si 1.86296 * 109.47140 * 134.72232 * 15 14 13 18 18 C 1.38635 * 120.11820 * 0.02562 * 14 13 12 19 19 F 1.35097 * 119.87974 * 180.02562 * 18 14 13 20 20 C 1.38679 * 120.23842 * 359.97438 * 18 14 13 21 21 C 1.37811 * 120.11560 * 0.02562 * 20 18 14 22 22 C 1.53772 * 87.08476 * 334.56881 * 6 5 3 23 23 H 1.08998 * 109.46940 * 299.99653 * 1 2 3 24 24 H 1.08996 * 109.46733 * 59.99869 * 1 2 3 25 25 H 1.08997 * 109.46815 * 179.97438 * 1 2 3 26 26 H 1.09002 * 113.61434 * 25.44494 * 5 3 2 27 27 H 1.08991 * 113.61539 * 254.54244 * 5 3 2 28 28 H 1.08991 * 109.47109 * 152.50155 * 8 6 5 29 29 H 1.09003 * 109.46876 * 32.50230 * 8 6 5 30 30 H 0.96998 * 120.00205 * 0.02562 * 9 8 6 31 31 H 1.08003 * 120.06117 * 359.97438 * 13 12 10 32 32 H 1.08998 * 109.46938 * 14.71866 * 15 14 13 33 33 H 0.96702 * 113.99431 * 299.99873 * 16 15 14 34 34 H 1.48500 * 110.00003 * 58.68449 * 17 15 14 35 35 H 1.48506 * 109.99698 * 179.97438 * 17 15 14 36 36 H 1.07996 * 119.93912 * 180.02562 * 20 18 14 37 37 H 1.08006 * 120.05768 * 180.02562 * 21 20 18 38 38 H 1.08995 * 113.61534 * 139.97749 * 22 6 5 39 39 H 1.09003 * 113.61496 * 270.88670 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.6109 2.3430 -0.6953 5 6 2.3003 2.3836 1.4069 6 6 3.5202 3.1752 0.9067 7 1 3.2653 4.1359 0.4593 8 6 4.6472 3.2797 1.9361 9 7 4.4191 4.4456 2.7934 10 6 5.2901 4.7376 3.7796 11 8 6.2648 4.0333 3.9581 12 6 5.0604 5.9135 4.6437 13 6 5.9614 6.2187 5.6658 14 6 5.7425 7.3176 6.4689 15 6 6.7176 7.6521 7.5682 16 8 6.1503 7.2998 8.8316 17 14 7.0835 9.4785 7.5392 18 6 4.6299 8.1188 6.2635 19 9 4.4204 9.1948 7.0531 20 6 3.7318 7.8202 5.2499 21 6 3.9411 6.7241 4.4413 22 6 3.7284 2.0521 -0.1228 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 2.5388 1.6610 2.1873 27 1 1.4451 3.0112 1.6569 28 1 5.6013 3.3889 1.4206 29 1 4.6657 2.3773 2.5474 30 1 3.6408 5.0069 2.6518 31 1 6.8283 5.5950 5.8269 32 1 7.6415 7.0939 7.4165 33 1 5.3239 7.7595 9.0336 34 1 5.8272 10.2510 7.7132 35 1 8.0436 9.8213 8.6191 36 1 2.8669 8.4479 5.0939 37 1 3.2413 6.4927 3.6518 38 1 4.0258 2.4121 -1.1076 39 1 4.3572 1.2388 0.2394 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_12496548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:36 Heat of formation + Delta-G solvation = -46.705377 kcal Electronic energy + Delta-G solvation = -22833.009739 eV Core-core repulsion = 19170.264141 eV Total energy + Delta-G solvation = -3662.745597 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.46713 -41.43679 -40.15099 -39.39009 -37.81856 -35.69046 -32.99585 -32.09243 -29.91691 -29.27872 -26.99305 -26.70061 -25.19651 -23.62095 -23.48010 -21.62249 -20.52584 -19.28305 -18.84949 -18.22170 -17.88340 -17.36759 -17.10582 -16.90458 -16.61604 -16.25654 -16.13642 -15.63121 -15.31570 -15.04319 -15.01050 -14.82582 -14.67147 -14.24740 -14.07147 -13.99206 -13.85370 -13.48851 -13.43494 -13.37597 -12.97467 -12.76439 -12.36069 -11.90023 -11.77775 -11.35329 -11.33769 -11.18286 -10.87340 -10.76386 -10.25817 -10.11559 -9.80820 -8.70499 -4.97311 -0.51171 0.02574 0.79199 1.19396 1.56841 1.59118 1.65883 1.93533 2.04494 2.56899 2.97344 3.23211 3.39020 3.44477 3.46059 3.58161 3.61655 3.69822 3.81077 3.98300 4.11543 4.17126 4.31110 4.32023 4.34083 4.37498 4.62514 4.65585 4.76586 4.77432 4.78510 4.85368 4.86805 4.90363 4.97848 5.00823 5.06256 5.10714 5.29212 5.46841 5.60212 6.30389 6.44879 7.12244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.323 6.323 3 C -0.073 4.073 4 H 0.120 0.880 5 C -0.119 4.119 6 C -0.102 4.102 7 H 0.128 0.872 8 C 0.131 3.869 9 N -0.706 5.706 10 C 0.557 3.443 11 O -0.580 6.580 12 C -0.152 4.152 13 C -0.023 4.023 14 C -0.155 4.155 15 C -0.084 4.084 16 O -0.544 6.544 17 Si 0.751 3.249 18 C 0.108 3.892 19 F -0.130 7.130 20 C -0.146 4.146 21 C -0.039 4.039 22 C -0.105 4.105 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.417 0.583 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.384 0.616 34 H -0.252 1.252 35 H -0.308 1.308 36 H 0.173 0.827 37 H 0.176 0.824 38 H 0.092 0.908 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.293 4.247 -5.891 9.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.095 6.095 3 C -0.201 4.201 4 H 0.138 0.862 5 C -0.159 4.159 6 C -0.122 4.122 7 H 0.146 0.854 8 C 0.008 3.992 9 N -0.359 5.359 10 C 0.345 3.655 11 O -0.460 6.460 12 C -0.155 4.155 13 C -0.042 4.042 14 C -0.157 4.157 15 C -0.193 4.193 16 O -0.352 6.352 17 Si 0.655 3.345 18 C 0.089 3.911 19 F -0.109 7.109 20 C -0.165 4.165 21 C -0.057 4.057 22 C -0.144 4.144 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.256 0.744 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.233 0.767 34 H -0.177 1.177 35 H -0.236 1.236 36 H 0.190 0.810 37 H 0.194 0.806 38 H 0.110 0.890 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.515 3.214 -5.341 7.697 hybrid contribution -1.790 0.634 1.042 2.166 sum -6.305 3.848 -4.299 8.546 Atomic orbital electron populations 1.23360 0.91693 1.06969 1.05754 1.87267 1.10479 1.13969 1.97795 1.24764 1.01277 0.91899 1.02165 0.86231 1.23369 0.98915 0.98931 0.94685 1.22687 0.94345 0.99679 0.95529 0.85431 1.21363 0.98825 0.87702 0.91352 1.45735 1.27432 1.30248 1.32457 1.18385 0.82322 0.84280 0.80500 1.90809 1.30990 1.52525 1.71720 1.19979 0.98668 0.97742 0.99123 1.21020 0.98289 0.93525 0.91363 1.20137 0.97371 0.97258 1.00902 1.25186 0.97864 1.14629 0.81593 1.86627 1.43970 1.68841 1.35722 0.94625 0.78849 0.72883 0.88149 1.18123 0.96149 0.84895 0.91960 1.91553 1.94251 1.52555 1.72544 1.21411 1.00546 0.99723 0.94774 1.21519 0.94849 0.91445 0.97909 1.22792 0.93025 0.97928 1.00662 0.89567 0.89570 0.88091 0.90008 0.88994 0.91629 0.92475 0.74415 0.84422 0.85328 0.76740 1.17656 1.23599 0.80996 0.80639 0.88976 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.38 10.76 113.37 1.22 1.60 16 2 S -0.32 -0.54 22.18 -56.49 -1.25 -1.79 16 3 C -0.07 0.35 4.27 31.12 0.13 0.48 16 4 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 5 C -0.12 0.86 7.22 31.12 0.22 1.09 16 6 C -0.10 0.90 3.75 -10.27 -0.04 0.87 16 7 H 0.13 -1.70 8.14 -2.39 -0.02 -1.72 16 8 C 0.13 -0.48 5.51 86.38 0.48 -0.01 16 9 N -0.71 3.62 5.51 -466.08 -2.57 1.05 16 10 C 0.56 1.31 7.77 86.75 0.67 1.98 16 11 O -0.58 -6.99 16.34 -3.94 -0.06 -7.06 16 12 C -0.15 0.19 5.87 -20.09 -0.12 0.07 16 13 C -0.02 -0.03 9.21 22.51 0.21 0.17 16 14 C -0.16 -0.04 4.78 -19.86 -0.09 -0.14 16 15 C -0.08 -0.11 2.80 71.24 0.20 0.09 16 16 O -0.54 -2.69 12.88 -148.98 -1.92 -4.61 16 17 Si 0.75 0.25 30.81 68.60 2.11 2.36 16 18 C 0.11 -0.17 6.62 22.47 0.15 -0.02 16 19 F -0.13 -0.11 12.57 44.97 0.57 0.46 16 20 C -0.15 0.98 10.01 22.27 0.22 1.21 16 21 C -0.04 0.31 9.54 22.51 0.21 0.53 16 22 C -0.10 0.56 7.23 31.12 0.22 0.79 16 23 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 24 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.08 -0.27 7.86 -2.39 -0.02 -0.29 16 27 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.06 0.03 7.84 -2.39 -0.02 0.01 16 30 H 0.42 -5.27 6.50 -92.71 -0.60 -5.87 16 31 H 0.14 0.48 7.58 -2.91 -0.02 0.45 16 32 H 0.13 -0.02 7.76 -2.39 -0.02 -0.04 16 33 H 0.38 -0.10 8.40 -74.06 -0.62 -0.72 16 34 H -0.25 -0.88 5.28 99.48 0.52 -0.35 16 35 H -0.31 -2.52 7.11 99.48 0.71 -1.81 16 36 H 0.17 -2.02 8.06 -2.91 -0.02 -2.05 16 37 H 0.18 -2.86 6.40 -2.91 -0.02 -2.88 16 38 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.08 -0.15 8.06 -2.39 -0.02 -0.17 16 Total: 0.00 -20.57 341.62 0.28 -20.29 By element: Atomic # 1 Polarization: -19.12 SS G_CDS: -0.29 Total: -19.41 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 3.69 Total: 8.71 kcal Atomic # 7 Polarization: 3.62 SS G_CDS: -2.57 Total: 1.05 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.98 Total: -11.66 kcal Atomic # 9 Polarization: -0.11 SS G_CDS: 0.57 Total: 0.46 kcal Atomic # 14 Polarization: 0.25 SS G_CDS: 2.11 Total: 2.36 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -1.25 Total: -1.79 kcal Total: -20.57 0.28 -20.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_12496548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.416 kcal (2) G-P(sol) polarization free energy of solvation -20.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds