Wall clock time and date at job start Tue Mar 9 2021 12:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81404 * 102.99831 * 2 1 4 4 H 1.08993 * 112.90848 * 316.25213 * 3 2 1 5 5 C 1.53962 * 113.66432 * 87.55391 * 3 2 1 6 6 C 1.53782 * 87.11063 * 139.88959 * 5 3 2 7 7 H 1.08996 * 113.68722 * 89.19879 * 6 5 3 8 8 C 1.53003 * 113.61259 * 220.08801 * 6 5 3 9 9 N 1.46493 * 109.47111 * 272.50057 * 8 6 5 10 10 C 1.34777 * 119.99981 * 180.02562 * 9 8 6 11 11 O 1.21281 * 119.99917 * 359.97438 * 10 9 8 12 12 C 1.50705 * 119.99857 * 179.97438 * 10 9 8 13 13 N 1.46507 * 109.46896 * 179.97438 * 12 10 9 14 14 C 1.35043 * 125.92773 * 125.00088 * 13 12 10 15 15 C 1.35081 * 107.97619 * 179.97438 * 14 13 12 16 16 C 1.50697 * 126.07650 * 180.02562 * 15 14 13 17 17 O 1.42895 * 109.47248 * 254.97668 * 16 15 14 18 18 Si 1.86301 * 109.46996 * 14.97617 * 16 15 14 19 19 C 1.40853 * 107.84838 * 0.02562 * 15 14 13 20 20 C 1.48423 * 126.03445 * 180.02562 * 19 15 14 21 21 C 1.39319 * 120.12068 * 324.72600 * 20 19 15 22 22 C 1.38026 * 119.87935 * 179.68123 * 21 20 19 23 23 C 1.38324 * 120.11614 * 0.61351 * 22 21 20 24 24 C 1.38325 * 120.24292 * 359.67995 * 23 22 21 25 25 C 1.38022 * 120.11826 * 359.97438 * 24 23 22 26 26 N 1.31615 * 107.92346 * 359.75315 * 19 15 14 27 27 C 1.53781 * 87.08260 * 334.63747 * 6 5 3 28 28 H 1.08995 * 109.47728 * 59.99829 * 1 2 3 29 29 H 1.09008 * 109.46736 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47328 * 299.99521 * 1 2 3 31 31 H 1.08997 * 113.53543 * 25.33633 * 5 3 2 32 32 H 1.08994 * 113.66446 * 254.45836 * 5 3 2 33 33 H 1.08994 * 109.47052 * 32.49864 * 8 6 5 34 34 H 1.09002 * 109.46569 * 152.49796 * 8 6 5 35 35 H 0.97001 * 120.00454 * 359.97438 * 9 8 6 36 36 H 1.08994 * 109.47266 * 299.99773 * 12 10 9 37 37 H 1.08995 * 109.47440 * 59.99993 * 12 10 9 38 38 H 1.07996 * 126.01149 * 359.93885 * 14 13 12 39 39 H 1.09001 * 109.47379 * 134.97203 * 16 15 14 40 40 H 0.96697 * 114.00436 * 59.99820 * 17 16 15 41 41 H 1.48501 * 109.99999 * 180.02562 * 18 16 15 42 42 H 1.48504 * 109.99832 * 301.31563 * 18 16 15 43 43 H 1.08000 * 120.05841 * 359.97085 * 21 20 19 44 44 H 1.07992 * 119.94272 * 180.31545 * 22 21 20 45 45 H 1.07998 * 119.87578 * 179.69901 * 23 22 21 46 46 H 1.07999 * 119.94084 * 180.02562 * 24 23 22 47 47 H 1.08002 * 120.05922 * 180.02562 * 25 24 23 48 48 H 1.09002 * 113.61445 * 139.98212 * 27 6 5 49 49 H 1.09002 * 113.61408 * 270.79943 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 1 1.6107 2.3441 -0.6942 5 6 2.3023 2.3832 1.4089 6 6 3.5231 3.1736 0.9091 7 1 3.2696 4.1356 0.4638 8 6 4.6513 3.2739 1.9378 9 7 4.4261 4.4384 2.7976 10 6 5.2990 4.7275 3.7829 11 8 6.2708 4.0233 3.9580 12 6 5.0677 5.9259 4.6670 13 7 6.1479 6.0218 5.6520 14 6 6.9379 7.0972 5.8594 15 6 7.8067 6.7918 6.8477 16 6 8.8720 7.7005 7.4049 17 8 10.1515 7.2867 6.9215 18 14 8.5401 9.4518 6.8630 19 6 7.5398 5.4733 7.2650 20 6 8.2582 4.7328 8.3321 21 6 9.6255 4.9254 8.5176 22 6 10.2874 4.2392 9.5157 23 6 9.5980 3.3521 10.3227 24 6 8.2416 3.1526 10.1389 25 6 7.5686 3.8389 9.1485 26 7 6.5371 5.0159 6.5455 27 6 3.7283 2.0521 -0.1228 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 2.5402 1.6586 2.1876 32 1 1.4484 3.0120 1.6609 33 1 4.6687 2.3704 2.5472 34 1 5.6051 3.3824 1.4215 35 1 3.6491 5.0020 2.6573 36 1 5.0502 6.8292 4.0573 37 1 4.1140 5.8176 5.1835 38 1 6.8849 8.0359 5.3282 39 1 8.8608 7.6487 8.4936 40 1 10.2337 7.3077 5.9583 41 1 9.5842 10.3578 7.4055 42 1 8.5213 9.5297 5.3802 43 1 10.1657 5.6138 7.8846 44 1 11.3462 4.3914 9.6637 45 1 10.1207 2.8136 11.0994 46 1 7.7081 2.4592 10.7721 47 1 6.5094 3.6827 9.0061 48 1 4.0255 2.4135 -1.1072 49 1 4.3572 1.2376 0.2367 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_12622748.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:38 Heat of formation + Delta-G solvation = 73.064920 kcal Electronic energy + Delta-G solvation = -30608.950554 eV Core-core repulsion = 26438.709462 eV Total energy + Delta-G solvation = -4170.241092 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.48871 -40.92049 -39.88346 -39.61610 -37.88760 -35.61790 -34.77608 -32.36680 -31.91949 -31.46456 -30.15389 -29.73351 -28.15587 -26.74614 -25.94367 -24.50804 -23.67521 -23.45763 -21.94578 -21.49595 -21.03871 -20.51184 -18.87745 -18.39794 -17.79371 -17.69095 -17.13166 -16.90954 -16.73033 -16.52286 -16.19740 -16.08780 -15.83217 -15.48338 -15.45677 -15.12191 -14.94286 -14.82617 -14.45081 -14.34358 -14.25092 -14.10743 -14.05221 -13.76679 -13.64397 -13.53896 -13.48423 -13.28529 -12.80842 -12.53906 -12.38079 -12.14091 -11.93791 -11.82821 -11.69052 -11.60513 -11.38469 -11.27181 -10.82464 -10.65140 -10.39713 -10.19619 -9.86916 -9.75469 -9.28192 -8.74508 -4.83025 0.07739 0.47980 0.75020 0.83003 1.30854 1.43763 1.48018 1.62530 1.66148 1.71910 2.06111 2.10179 2.90794 3.30530 3.39743 3.42274 3.47095 3.57784 3.67876 3.71114 3.77671 3.94854 4.03784 4.12855 4.13558 4.15427 4.19734 4.28809 4.29463 4.31920 4.34316 4.46622 4.53313 4.58177 4.61842 4.71097 4.72667 4.79527 4.81233 4.83941 4.88184 4.94218 5.00834 5.01013 5.18077 5.26630 5.32252 5.43251 5.57692 5.62190 5.65011 5.92517 6.06314 6.46037 6.57985 6.62448 7.16447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.326 6.326 3 C -0.072 4.072 4 H 0.122 0.878 5 C -0.118 4.118 6 C -0.099 4.099 7 H 0.131 0.869 8 C 0.136 3.864 9 N -0.708 5.708 10 C 0.492 3.508 11 O -0.571 6.571 12 C 0.111 3.889 13 N -0.359 5.359 14 C 0.075 3.925 15 C -0.262 4.262 16 C -0.052 4.052 17 O -0.546 6.546 18 Si 0.786 3.214 19 C 0.109 3.891 20 C -0.037 4.037 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.117 4.117 24 C -0.131 4.131 25 C -0.109 4.109 26 N -0.295 5.295 27 C -0.107 4.107 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.423 0.577 36 H 0.181 0.819 37 H 0.145 0.855 38 H 0.220 0.780 39 H 0.105 0.895 40 H 0.383 0.617 41 H -0.306 1.306 42 H -0.262 1.262 43 H 0.152 0.848 44 H 0.140 0.860 45 H 0.145 0.855 46 H 0.142 0.858 47 H 0.118 0.882 48 H 0.092 0.908 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.548 8.073 -3.532 12.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.098 6.098 3 C -0.200 4.200 4 H 0.140 0.860 5 C -0.157 4.157 6 C -0.119 4.119 7 H 0.149 0.851 8 C 0.011 3.989 9 N -0.362 5.362 10 C 0.277 3.723 11 O -0.449 6.449 12 C -0.013 4.013 13 N -0.141 5.141 14 C -0.070 4.070 15 C -0.274 4.274 16 C -0.161 4.161 17 O -0.355 6.355 18 Si 0.688 3.312 19 C -0.056 4.056 20 C -0.039 4.039 21 C -0.132 4.132 22 C -0.149 4.149 23 C -0.135 4.135 24 C -0.149 4.149 25 C -0.128 4.128 26 N -0.116 5.116 27 C -0.146 4.146 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.261 0.739 36 H 0.198 0.802 37 H 0.163 0.837 38 H 0.236 0.764 39 H 0.123 0.877 40 H 0.233 0.767 41 H -0.234 1.234 42 H -0.187 1.187 43 H 0.169 0.831 44 H 0.158 0.842 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.136 0.864 48 H 0.110 0.890 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.753 6.258 -3.634 10.606 hybrid contribution 0.225 0.374 -0.645 0.779 sum -7.528 6.632 -4.279 10.907 Atomic orbital electron populations 1.23361 0.91476 1.07018 1.05814 1.87297 1.10707 1.13978 1.97794 1.24785 1.01101 0.91930 1.02191 0.86026 1.23374 0.98928 0.98874 0.94563 1.22672 0.94213 0.99703 0.95345 0.85140 1.21228 0.98476 0.87908 0.91266 1.45713 1.27782 1.30233 1.32506 1.21189 0.82735 0.86988 0.81389 1.90835 1.31287 1.52139 1.70648 1.22014 0.90075 1.00032 0.89158 1.48144 1.27908 1.09750 1.28258 1.22850 0.91837 0.94171 0.98170 1.20560 1.05555 0.96247 1.05015 1.24643 0.81150 1.07803 1.02456 1.86452 1.32967 1.88213 1.27857 0.94055 0.87340 0.71029 0.78734 1.20854 0.94877 0.93832 0.96008 1.18051 0.93431 0.97770 0.94678 1.21990 0.93172 0.99528 0.98486 1.21410 1.01005 0.96931 0.95599 1.21590 0.94487 0.97863 0.99571 1.21356 0.95178 1.00069 0.98256 1.21321 1.00094 0.95820 0.95600 1.77686 1.16582 1.12197 1.05179 1.22796 0.93152 0.97995 1.00704 0.89467 0.88050 0.89531 0.90374 0.88774 0.93467 0.92463 0.73899 0.80193 0.83744 0.76396 0.87707 0.76706 1.23398 1.18744 0.83120 0.84182 0.83690 0.83983 0.86376 0.88990 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.32 10.76 113.37 1.22 1.54 16 2 S -0.33 -0.85 22.18 -56.49 -1.25 -2.10 16 3 C -0.07 0.29 4.29 31.18 0.13 0.42 16 4 H 0.12 -0.83 8.14 -2.39 -0.02 -0.85 16 5 C -0.12 0.75 7.23 31.18 0.23 0.98 16 6 C -0.10 0.81 3.76 -10.27 -0.04 0.77 16 7 H 0.13 -1.72 8.14 -2.39 -0.02 -1.74 16 8 C 0.14 -0.34 5.51 86.38 0.48 0.14 16 9 N -0.71 4.50 5.56 -463.07 -2.57 1.93 16 10 C 0.49 0.43 7.86 87.66 0.69 1.12 16 11 O -0.57 -8.34 15.71 -3.03 -0.05 -8.39 16 12 C 0.11 -0.80 6.98 85.63 0.60 -0.20 16 13 N -0.36 -0.93 3.40 -351.90 -1.20 -2.12 16 14 C 0.08 -0.09 9.96 83.47 0.83 0.74 16 15 C -0.26 -1.10 5.34 -19.95 -0.11 -1.21 16 16 C -0.05 -0.08 2.00 71.23 0.14 0.06 16 17 O -0.55 -2.13 10.10 -148.98 -1.50 -3.63 16 18 Si 0.79 -3.11 30.81 68.60 2.11 -0.99 16 19 C 0.11 1.24 6.74 42.53 0.29 1.52 16 20 C -0.04 -0.45 5.80 -20.04 -0.12 -0.57 16 21 C -0.11 -1.17 8.94 22.48 0.20 -0.97 16 22 C -0.13 -0.96 10.03 22.24 0.22 -0.73 16 23 C -0.12 -0.67 10.04 22.31 0.22 -0.45 16 24 C -0.13 -0.92 10.03 22.24 0.22 -0.70 16 25 C -0.11 -1.18 9.75 22.48 0.22 -0.96 16 26 N -0.29 -3.63 11.64 -48.15 -0.56 -4.19 16 27 C -0.11 0.44 7.22 31.12 0.22 0.67 16 28 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H 0.08 -0.14 7.85 -2.39 -0.02 -0.16 16 32 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 33 H 0.05 0.15 7.84 -2.39 -0.02 0.14 16 34 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.42 -6.37 8.47 -92.71 -0.79 -7.15 16 36 H 0.18 -3.26 8.07 -2.39 -0.02 -3.28 16 37 H 0.15 -1.76 8.14 -2.39 -0.02 -1.78 16 38 H 0.22 -2.35 6.33 -2.91 -0.02 -2.37 16 39 H 0.10 0.31 7.84 -2.39 -0.02 0.29 16 40 H 0.38 -0.55 8.70 -74.06 -0.64 -1.20 16 41 H -0.31 -1.38 7.11 99.48 0.71 -0.67 16 42 H -0.26 0.94 6.99 99.48 0.70 1.63 16 43 H 0.15 1.51 4.52 -2.91 -0.01 1.49 16 44 H 0.14 0.43 8.06 -2.91 -0.02 0.41 16 45 H 0.15 0.06 8.06 -2.91 -0.02 0.04 16 46 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 47 H 0.12 1.24 8.06 -2.91 -0.02 1.22 16 48 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 49 H 0.08 0.01 8.06 -2.39 -0.02 -0.01 16 Total: 0.00 -33.96 418.94 0.21 -33.74 By element: Atomic # 1 Polarization: -15.99 SS G_CDS: -0.42 Total: -16.41 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 5.66 Total: 2.17 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -4.33 Total: -4.38 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -1.55 Total: -12.03 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.11 Total: -0.99 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -1.25 Total: -2.10 kcal Total: -33.96 0.21 -33.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_12622748.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.809 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds