Wall clock time and date at job start Tue Mar 9 2021 12:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81404 * 102.99943 * 2 1 4 4 H 1.09005 * 112.84848 * 43.80426 * 3 2 1 5 5 C 1.53776 * 113.60891 * 175.00086 * 3 2 1 6 6 C 1.53788 * 87.08066 * 139.98350 * 5 3 2 7 7 H 1.08995 * 113.61287 * 89.19288 * 6 5 3 8 8 C 1.52992 * 113.61170 * 220.01882 * 6 5 3 9 9 N 1.46500 * 109.46878 * 183.46539 * 8 6 5 10 10 C 1.34781 * 120.00065 * 179.97438 * 9 8 6 11 11 O 1.21620 * 119.99954 * 0.02562 * 10 9 8 12 12 C 1.47294 * 119.99920 * 180.02562 * 10 9 8 13 13 C 1.40368 * 120.04670 * 180.02562 * 12 10 9 14 14 O 1.35679 * 120.13750 * 359.97438 * 13 12 10 15 15 C 1.38313 * 119.73098 * 179.97438 * 13 12 10 16 16 C 1.39567 * 119.80769 * 359.97438 * 15 13 12 17 17 C 1.47570 * 119.95499 * 179.97438 * 16 15 13 18 18 C 1.36109 * 125.94725 * 179.97438 * 17 16 15 19 19 C 1.40795 * 106.73337 * 180.28484 * 18 17 16 20 20 C 1.34833 * 107.04981 * 359.56997 * 19 18 17 21 21 C 1.50704 * 125.65107 * 180.15919 * 20 19 18 22 22 O 1.42898 * 109.47221 * 65.29854 * 21 20 19 23 23 Si 1.86301 * 109.46886 * 185.29873 * 21 20 19 24 24 O 1.34226 * 108.69670 * 0.43348 * 20 19 18 25 25 C 1.39960 * 120.09261 * 0.25238 * 16 15 13 26 26 C 1.36391 * 120.27723 * 359.48835 * 25 16 15 27 27 C 1.53792 * 87.16719 * 334.60699 * 6 5 3 28 28 H 1.08999 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47101 * 299.99856 * 1 2 3 30 30 H 1.08996 * 109.47061 * 60.00225 * 1 2 3 31 31 H 1.08997 * 113.62143 * 25.43070 * 5 3 2 32 32 H 1.09002 * 113.69051 * 254.53350 * 5 3 2 33 33 H 1.09001 * 109.47619 * 63.46588 * 8 6 5 34 34 H 1.08997 * 109.47155 * 303.46664 * 8 6 5 35 35 H 0.97004 * 120.00360 * 359.97438 * 9 8 6 36 36 H 0.96707 * 113.99842 * 269.98144 * 14 13 12 37 37 H 1.07994 * 120.10110 * 179.97438 * 15 13 12 38 38 H 1.08002 * 126.62860 * 0.02562 * 18 17 16 39 39 H 1.08005 * 126.47505 * 179.70356 * 19 18 17 40 40 H 1.08999 * 109.46855 * 305.29506 * 21 20 19 41 41 H 0.96705 * 113.99661 * 179.97438 * 22 21 20 42 42 H 1.48507 * 110.00073 * 178.68019 * 23 21 20 43 43 H 1.48496 * 110.00038 * 299.99825 * 23 21 20 44 44 H 1.08004 * 119.86437 * 179.74358 * 25 16 15 45 45 H 1.07995 * 119.90953 * 180.27345 * 26 25 16 46 46 H 1.09001 * 113.60853 * 139.94408 * 27 6 5 47 47 H 1.08999 * 113.60977 * 270.83842 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7284 2.0519 0.1228 6 6 3.5207 3.1738 -0.9083 7 1 3.2658 4.1351 -0.4623 8 6 4.6480 3.2765 -1.9376 9 7 4.4011 4.4198 -2.8197 10 6 5.2695 4.7071 -3.8096 11 8 6.2578 4.0170 -3.9708 12 6 5.0215 5.8570 -4.6961 13 6 5.9250 6.1568 -5.7277 14 8 7.0288 5.3894 -5.9109 15 6 5.6855 7.2378 -6.5567 16 6 4.5477 8.0223 -6.3624 17 6 4.2892 9.1767 -7.2446 18 6 3.2234 10.0196 -7.1659 19 6 3.3765 10.9641 -8.1988 20 6 4.5206 10.6615 -8.8449 21 6 5.0882 11.4099 -10.0234 22 8 5.4546 12.7301 -9.6176 23 14 6.5933 10.5157 -10.6604 24 8 5.0671 9.5795 -8.2684 25 6 3.6544 7.7192 -5.3284 26 6 3.8843 6.6510 -4.5122 27 6 2.2997 2.3838 -1.4086 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.3573 1.2381 -0.2381 32 1 4.0271 2.4133 1.1068 33 1 4.6840 2.3620 -2.5296 34 1 5.5988 3.4135 -1.4226 35 1 3.6126 4.9701 -2.6914 36 1 7.8030 5.6890 -5.4149 37 1 6.3768 7.4741 -7.3519 38 1 2.4144 9.9706 -6.4521 39 1 2.7055 11.7786 -8.4286 40 1 4.3385 11.4672 -10.8126 41 1 5.8287 13.2701 -10.3274 42 1 7.1440 11.2263 -11.8424 43 1 7.6229 10.4308 -9.5937 44 1 2.7772 8.3313 -5.1789 45 1 3.1888 6.4199 -3.7189 46 1 1.4454 3.0128 -1.6588 47 1 2.5374 1.6609 -2.1891 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_12807986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:46 Heat of formation + Delta-G solvation = -30.574259 kcal Electronic energy + Delta-G solvation = -30315.995993 eV Core-core repulsion = 25945.823444 eV Total energy + Delta-G solvation = -4370.172549 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.122 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.71458 -41.52717 -40.33382 -39.26667 -38.15610 -37.82646 -35.45693 -34.23293 -33.50785 -31.39387 -30.75627 -29.98838 -29.25645 -26.98094 -26.84148 -24.73521 -24.08970 -23.73870 -22.35475 -21.87475 -21.29682 -20.72367 -19.67651 -18.87017 -18.76225 -18.00504 -17.66068 -17.13164 -17.08722 -16.86632 -16.51754 -16.26870 -16.12784 -15.92496 -15.90455 -15.43124 -15.22409 -14.79947 -14.75238 -14.43044 -14.27233 -14.18146 -14.12152 -14.05662 -13.99117 -13.61574 -13.59434 -13.50317 -13.49580 -12.86424 -12.85297 -12.70424 -12.07468 -12.02884 -11.86767 -11.80951 -11.50031 -11.11282 -10.86571 -10.78831 -10.72006 -10.57778 -10.08194 -9.94766 -8.99371 -8.65753 -5.02331 -0.77022 0.11961 0.65784 0.71511 1.07696 1.34664 1.45563 1.56909 1.67733 1.91144 2.01085 2.08289 2.65835 3.00440 3.18863 3.26606 3.30355 3.46388 3.49223 3.53792 3.63932 3.67820 3.77310 3.91572 3.95638 4.03985 4.12325 4.16334 4.19004 4.20732 4.21901 4.38283 4.52235 4.57660 4.60157 4.64392 4.68338 4.72320 4.74902 4.78311 4.82211 4.87361 4.92902 5.00429 5.10028 5.18420 5.21579 5.39464 5.40474 5.47445 6.00066 6.22881 6.45090 6.70459 7.23916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.254 6.254 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.100 4.100 6 C -0.122 4.122 7 H 0.101 0.899 8 C 0.132 3.868 9 N -0.728 5.728 10 C 0.557 3.443 11 O -0.517 6.517 12 C -0.165 4.165 13 C 0.179 3.821 14 O -0.474 6.474 15 C -0.141 4.141 16 C 0.031 3.969 17 C 0.024 3.976 18 C -0.176 4.176 19 C -0.172 4.172 20 C 0.003 3.997 21 C -0.038 4.038 22 O -0.533 6.533 23 Si 0.695 3.305 24 O -0.161 6.161 25 C -0.116 4.116 26 C -0.065 4.065 27 C -0.123 4.123 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.399 0.601 36 H 0.399 0.601 37 H 0.144 0.856 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.099 0.901 41 H 0.388 0.612 42 H -0.251 1.251 43 H -0.251 1.251 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.073 0.927 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 3.450 0.117 6.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.025 6.025 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.139 4.139 6 C -0.142 4.142 7 H 0.119 0.881 8 C 0.008 3.992 9 N -0.381 5.381 10 C 0.345 3.655 11 O -0.393 6.393 12 C -0.169 4.169 13 C 0.132 3.868 14 O -0.285 6.285 15 C -0.159 4.159 16 C 0.031 3.969 17 C -0.026 4.026 18 C -0.195 4.195 19 C -0.191 4.191 20 C -0.047 4.047 21 C -0.147 4.147 22 O -0.342 6.342 23 Si 0.594 3.406 24 O -0.058 6.058 25 C -0.134 4.134 26 C -0.083 4.083 27 C -0.163 4.163 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.234 0.766 36 H 0.257 0.743 37 H 0.162 0.838 38 H 0.174 0.826 39 H 0.173 0.827 40 H 0.116 0.884 41 H 0.238 0.762 42 H -0.175 1.175 43 H -0.174 1.174 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.092 0.908 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.256 1.370 -0.012 3.532 hybrid contribution -1.288 2.908 0.393 3.205 sum -4.544 4.278 0.382 6.253 Atomic orbital electron populations 1.23371 0.94141 1.06639 1.04914 1.87011 1.07547 1.10316 1.97621 1.24708 1.01056 0.94343 1.01186 0.87615 1.22756 0.93368 0.97926 0.99870 1.22767 0.95735 0.98957 0.96731 0.88111 1.21368 0.98011 0.89043 0.90759 1.45887 1.26995 1.32289 1.32925 1.17968 0.83140 0.84190 0.80240 1.90855 1.27680 1.50254 1.70536 1.20486 0.98701 0.99000 0.98700 1.18285 0.88767 0.88539 0.91207 1.84776 1.20013 1.52809 1.70933 1.21599 0.98548 0.94337 1.01417 1.17748 0.94696 0.91241 0.93238 1.20293 0.92943 0.98263 0.91107 1.21889 0.99796 0.96229 1.01597 1.21534 0.98586 1.01759 0.97244 1.21345 0.94749 0.89806 0.98767 1.23806 1.09368 0.87234 0.94275 1.86566 1.84153 1.22808 1.40677 0.94460 0.76944 0.88680 0.80542 1.83922 1.45721 1.38517 1.37647 1.20696 0.99675 0.98316 0.94753 1.20798 0.95484 0.93537 0.98512 1.23449 0.98061 0.99158 0.95638 0.88063 0.90507 0.90423 0.88565 0.89856 0.90770 0.90901 0.76614 0.74254 0.83820 0.82551 0.82725 0.88377 0.76230 1.17522 1.17448 0.84351 0.84669 0.90824 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.15 10.76 101.05 1.09 1.24 16 2 S -0.25 -0.22 22.18 -107.50 -2.38 -2.61 16 3 C -0.08 0.13 4.28 -25.83 -0.11 0.02 16 4 H 0.11 -0.23 8.14 -51.93 -0.42 -0.66 16 5 C -0.10 0.19 7.23 -25.92 -0.19 0.01 16 6 C -0.12 0.36 3.75 -89.80 -0.34 0.02 16 7 H 0.10 -0.42 8.14 -51.93 -0.42 -0.84 16 8 C 0.13 -0.12 5.50 -4.05 -0.02 -0.14 16 9 N -0.73 0.65 5.50 -61.43 -0.34 0.31 16 10 C 0.56 1.34 7.75 -12.58 -0.10 1.25 16 11 O -0.52 -3.23 15.14 -16.70 -0.25 -3.48 16 12 C -0.17 -0.19 5.89 -104.79 -0.62 -0.81 16 13 C 0.18 0.37 6.71 -38.75 -0.26 0.11 16 14 O -0.47 -1.35 11.56 -40.70 -0.47 -1.82 16 15 C -0.14 -0.19 9.65 -39.06 -0.38 -0.56 16 16 C 0.03 0.02 5.87 -104.95 -0.62 -0.59 16 17 C 0.02 0.04 7.02 -36.54 -0.26 -0.22 16 18 C -0.18 -0.09 10.26 -39.38 -0.40 -0.50 16 19 C -0.17 -0.19 10.78 -39.82 -0.43 -0.62 16 20 C 0.00 0.01 6.24 -35.51 -0.22 -0.22 16 21 C -0.04 0.02 2.97 36.01 0.11 0.13 16 22 O -0.53 -0.21 12.86 -35.23 -0.45 -0.66 16 23 Si 0.69 -0.49 32.11 -169.99 -5.46 -5.95 16 24 O -0.16 -0.39 8.79 4.72 0.04 -0.35 16 25 C -0.12 0.16 9.48 -39.60 -0.38 -0.22 16 26 C -0.06 0.11 9.47 -39.62 -0.38 -0.27 16 27 C -0.12 0.29 7.24 -25.82 -0.19 0.11 16 28 H 0.10 -0.16 8.14 -51.92 -0.42 -0.58 16 29 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 30 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 31 H 0.10 -0.09 8.06 -51.93 -0.42 -0.51 16 32 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 33 H 0.07 0.04 7.87 -51.93 -0.41 -0.37 16 34 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.40 -1.48 6.48 -40.82 -0.26 -1.74 16 36 H 0.40 -0.35 9.06 45.56 0.41 0.07 16 37 H 0.14 0.12 7.89 -52.49 -0.41 -0.30 16 38 H 0.16 -0.34 7.24 -52.49 -0.38 -0.72 16 39 H 0.16 -0.06 8.06 -52.48 -0.42 -0.48 16 40 H 0.10 -0.30 7.96 -51.93 -0.41 -0.71 16 41 H 0.39 -1.58 8.74 45.56 0.40 -1.18 16 42 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 43 H -0.25 -0.79 7.11 56.52 0.40 -0.39 16 44 H 0.14 -0.51 6.95 -52.48 -0.37 -0.88 16 45 H 0.14 -0.66 6.38 -52.49 -0.33 -0.99 16 46 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 47 H 0.10 -0.10 7.88 -51.93 -0.41 -0.51 16 LS Contribution 410.91 15.07 6.19 6.19 Total: 0.00 -10.58 410.91 -12.40 -22.98 By element: Atomic # 1 Polarization: -7.74 SS G_CDS: -5.60 Total: -13.34 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -3.68 Total: -1.27 kcal Atomic # 7 Polarization: 0.65 SS G_CDS: -0.34 Total: 0.31 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -1.13 Total: -6.31 kcal Atomic # 14 Polarization: -0.49 SS G_CDS: -5.46 Total: -5.95 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -2.38 Total: -2.61 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -10.58 -12.40 -22.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_12807986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.596 kcal (2) G-P(sol) polarization free energy of solvation -10.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds