Wall clock time and date at job start Tue Mar 9 2021 12:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81404 * 102.99943 * 2 1 4 4 H 1.09005 * 112.84848 * 43.80426 * 3 2 1 5 5 C 1.53776 * 113.60891 * 175.00086 * 3 2 1 6 6 C 1.53788 * 87.08066 * 139.98350 * 5 3 2 7 7 H 1.08995 * 113.61287 * 89.19288 * 6 5 3 8 8 C 1.52992 * 113.61170 * 220.01882 * 6 5 3 9 9 N 1.46500 * 109.46878 * 183.46539 * 8 6 5 10 10 C 1.34781 * 120.00065 * 179.97438 * 9 8 6 11 11 O 1.21620 * 119.99954 * 0.02562 * 10 9 8 12 12 C 1.47294 * 119.99920 * 180.02562 * 10 9 8 13 13 C 1.40368 * 120.04670 * 180.02562 * 12 10 9 14 14 O 1.35679 * 120.13750 * 359.97438 * 13 12 10 15 15 C 1.38313 * 119.73098 * 179.97438 * 13 12 10 16 16 C 1.39567 * 119.80769 * 359.97438 * 15 13 12 17 17 C 1.47570 * 119.95499 * 179.97438 * 16 15 13 18 18 C 1.36109 * 125.94725 * 179.97438 * 17 16 15 19 19 C 1.40795 * 106.73337 * 180.28484 * 18 17 16 20 20 C 1.34833 * 107.04981 * 359.56997 * 19 18 17 21 21 C 1.50704 * 125.65107 * 180.15919 * 20 19 18 22 22 O 1.42898 * 109.47221 * 65.29854 * 21 20 19 23 23 Si 1.86301 * 109.46886 * 185.29873 * 21 20 19 24 24 O 1.34226 * 108.69670 * 0.43348 * 20 19 18 25 25 C 1.39960 * 120.09261 * 0.25238 * 16 15 13 26 26 C 1.36391 * 120.27723 * 359.48835 * 25 16 15 27 27 C 1.53792 * 87.16719 * 334.60699 * 6 5 3 28 28 H 1.08999 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47101 * 299.99856 * 1 2 3 30 30 H 1.08996 * 109.47061 * 60.00225 * 1 2 3 31 31 H 1.08997 * 113.62143 * 25.43070 * 5 3 2 32 32 H 1.09002 * 113.69051 * 254.53350 * 5 3 2 33 33 H 1.09001 * 109.47619 * 63.46588 * 8 6 5 34 34 H 1.08997 * 109.47155 * 303.46664 * 8 6 5 35 35 H 0.97004 * 120.00360 * 359.97438 * 9 8 6 36 36 H 0.96707 * 113.99842 * 269.98144 * 14 13 12 37 37 H 1.07994 * 120.10110 * 179.97438 * 15 13 12 38 38 H 1.08002 * 126.62860 * 0.02562 * 18 17 16 39 39 H 1.08005 * 126.47505 * 179.70356 * 19 18 17 40 40 H 1.08999 * 109.46855 * 305.29506 * 21 20 19 41 41 H 0.96705 * 113.99661 * 179.97438 * 22 21 20 42 42 H 1.48507 * 110.00073 * 178.68019 * 23 21 20 43 43 H 1.48496 * 110.00038 * 299.99825 * 23 21 20 44 44 H 1.08004 * 119.86437 * 179.74358 * 25 16 15 45 45 H 1.07995 * 119.90953 * 180.27345 * 26 25 16 46 46 H 1.09001 * 113.60853 * 139.94408 * 27 6 5 47 47 H 1.08999 * 113.60977 * 270.83842 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7284 2.0519 0.1228 6 6 3.5207 3.1738 -0.9083 7 1 3.2658 4.1351 -0.4623 8 6 4.6480 3.2765 -1.9376 9 7 4.4011 4.4198 -2.8197 10 6 5.2695 4.7071 -3.8096 11 8 6.2578 4.0170 -3.9708 12 6 5.0215 5.8570 -4.6961 13 6 5.9250 6.1568 -5.7277 14 8 7.0288 5.3894 -5.9109 15 6 5.6855 7.2378 -6.5567 16 6 4.5477 8.0223 -6.3624 17 6 4.2892 9.1767 -7.2446 18 6 3.2234 10.0196 -7.1659 19 6 3.3765 10.9641 -8.1988 20 6 4.5206 10.6615 -8.8449 21 6 5.0882 11.4099 -10.0234 22 8 5.4546 12.7301 -9.6176 23 14 6.5933 10.5157 -10.6604 24 8 5.0671 9.5795 -8.2684 25 6 3.6544 7.7192 -5.3284 26 6 3.8843 6.6510 -4.5122 27 6 2.2997 2.3838 -1.4086 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.3573 1.2381 -0.2381 32 1 4.0271 2.4133 1.1068 33 1 4.6840 2.3620 -2.5296 34 1 5.5988 3.4135 -1.4226 35 1 3.6126 4.9701 -2.6914 36 1 7.8030 5.6890 -5.4149 37 1 6.3768 7.4741 -7.3519 38 1 2.4144 9.9706 -6.4521 39 1 2.7055 11.7786 -8.4286 40 1 4.3385 11.4672 -10.8126 41 1 5.8287 13.2701 -10.3274 42 1 7.1440 11.2263 -11.8424 43 1 7.6229 10.4308 -9.5937 44 1 2.7772 8.3313 -5.1789 45 1 3.1888 6.4199 -3.7189 46 1 1.4454 3.0128 -1.6588 47 1 2.5374 1.6609 -2.1891 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_12807986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:44 Heat of formation + Delta-G solvation = -30.224866 kcal Electronic energy + Delta-G solvation = -30315.980842 eV Core-core repulsion = 25945.823444 eV Total energy + Delta-G solvation = -4370.157398 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.122 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.73918 -41.58827 -40.25623 -39.32224 -38.14005 -37.87612 -35.56448 -34.25593 -33.50142 -31.40090 -30.74991 -29.88153 -29.20722 -26.94683 -26.69131 -24.70717 -24.06394 -23.69802 -22.37956 -21.93450 -21.31387 -20.60817 -19.70373 -18.82661 -18.77831 -18.03705 -17.67008 -17.17766 -17.11895 -16.75542 -16.54394 -16.31675 -16.16391 -15.91866 -15.88452 -15.46963 -15.16496 -14.75579 -14.67683 -14.41594 -14.22025 -14.18973 -14.10786 -14.02303 -13.97206 -13.57287 -13.50222 -13.47974 -13.41079 -12.87979 -12.78880 -12.69034 -12.16803 -11.94665 -11.84019 -11.75809 -11.34273 -11.13168 -10.93353 -10.77340 -10.75586 -10.56789 -10.13532 -9.95073 -9.00610 -8.70205 -4.99950 -0.79055 0.14751 0.62952 0.79290 1.11103 1.34816 1.44824 1.66122 1.68814 1.88926 1.93291 2.06795 2.64810 3.01093 3.24727 3.39679 3.45317 3.54117 3.62102 3.63610 3.73349 3.80303 3.82304 3.99426 4.01315 4.18029 4.20820 4.31679 4.32006 4.32798 4.36381 4.41497 4.62173 4.65483 4.70246 4.75635 4.77637 4.80105 4.84442 4.87209 4.90334 4.98590 5.05868 5.06875 5.11309 5.22032 5.31434 5.43873 5.47052 5.54328 5.98483 6.48580 6.48937 6.68742 7.17837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.323 6.323 3 C -0.072 4.072 4 H 0.120 0.880 5 C -0.105 4.105 6 C -0.103 4.103 7 H 0.127 0.873 8 C 0.133 3.867 9 N -0.709 5.709 10 C 0.553 3.447 11 O -0.567 6.567 12 C -0.178 4.178 13 C 0.159 3.841 14 O -0.496 6.496 15 C -0.155 4.155 16 C 0.025 3.975 17 C 0.003 3.997 18 C -0.170 4.170 19 C -0.181 4.181 20 C -0.017 4.017 21 C -0.037 4.037 22 O -0.554 6.554 23 Si 0.752 3.248 24 O -0.180 6.180 25 C -0.109 4.109 26 C -0.049 4.049 27 C -0.119 4.119 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.416 0.584 36 H 0.408 0.592 37 H 0.135 0.865 38 H 0.186 0.814 39 H 0.170 0.830 40 H 0.131 0.869 41 H 0.406 0.594 42 H -0.260 1.260 43 H -0.313 1.313 44 H 0.172 0.828 45 H 0.175 0.825 46 H 0.093 0.907 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 5.303 0.846 9.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.095 6.095 3 C -0.200 4.200 4 H 0.139 0.861 5 C -0.144 4.144 6 C -0.123 4.123 7 H 0.145 0.855 8 C 0.009 3.991 9 N -0.362 5.362 10 C 0.341 3.659 11 O -0.447 6.447 12 C -0.182 4.182 13 C 0.113 3.887 14 O -0.309 6.309 15 C -0.173 4.173 16 C 0.025 3.975 17 C -0.047 4.047 18 C -0.189 4.189 19 C -0.200 4.200 20 C -0.067 4.067 21 C -0.146 4.146 22 O -0.366 6.366 23 Si 0.657 3.343 24 O -0.078 6.078 25 C -0.126 4.126 26 C -0.068 4.068 27 C -0.158 4.158 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.254 0.746 36 H 0.268 0.732 37 H 0.153 0.847 38 H 0.203 0.797 39 H 0.187 0.813 40 H 0.148 0.852 41 H 0.258 0.742 42 H -0.185 1.185 43 H -0.241 1.241 44 H 0.189 0.811 45 H 0.193 0.807 46 H 0.111 0.889 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.431 3.245 0.707 7.238 hybrid contribution -0.268 2.362 0.197 2.386 sum -6.699 5.607 0.905 8.783 Atomic orbital electron populations 1.23362 0.91599 1.06990 1.05777 1.87267 1.10570 1.13871 1.97792 1.24784 1.01168 0.91975 1.02110 0.86147 1.22785 0.93126 0.97909 1.00606 1.22688 0.94391 0.99693 0.95518 0.85506 1.21319 0.98655 0.88228 0.90857 1.45733 1.26795 1.32024 1.31662 1.18249 0.82835 0.84104 0.80662 1.90828 1.29855 1.52005 1.71981 1.20527 0.99815 0.99330 0.98536 1.18499 0.88969 0.89021 0.92236 1.84730 1.20940 1.53648 1.71536 1.21558 0.99325 0.94871 1.01582 1.17966 0.94830 0.90901 0.93852 1.20620 0.93568 0.99049 0.91415 1.22261 0.99836 0.95165 1.01601 1.21844 0.98578 1.02255 0.97340 1.21852 0.95359 0.89911 0.99534 1.23928 1.09840 0.86634 0.94210 1.86516 1.84431 1.23268 1.42339 0.93767 0.75138 0.87763 0.77646 1.83915 1.46506 1.39127 1.38275 1.21069 0.99874 0.98314 0.93363 1.21185 0.94552 0.92211 0.98817 1.23388 0.98861 0.98926 0.94674 0.88055 0.89546 0.89542 0.90207 0.88978 0.92739 0.91890 0.74569 0.73249 0.84741 0.79658 0.81287 0.85151 0.74200 1.18512 1.24094 0.81075 0.80736 0.88871 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.33 10.76 113.37 1.22 1.55 16 2 S -0.32 -0.77 22.18 -56.49 -1.25 -2.02 16 3 C -0.07 0.28 4.28 31.18 0.13 0.41 16 4 H 0.12 -0.79 8.14 -2.38 -0.02 -0.81 16 5 C -0.10 0.43 7.23 31.12 0.23 0.66 16 6 C -0.10 0.75 3.75 -10.26 -0.04 0.71 16 7 H 0.13 -1.49 8.14 -2.39 -0.02 -1.51 16 8 C 0.13 -0.21 5.50 86.38 0.47 0.27 16 9 N -0.71 1.80 5.50 -466.51 -2.57 -0.76 16 10 C 0.55 3.08 7.75 86.62 0.67 3.75 16 11 O -0.57 -8.43 15.14 16.90 0.26 -8.18 16 12 C -0.18 -0.45 5.89 -19.97 -0.12 -0.57 16 13 C 0.16 0.98 6.71 22.81 0.15 1.13 16 14 O -0.50 -4.40 11.56 -68.97 -0.80 -5.20 16 15 C -0.15 -0.72 9.65 22.61 0.22 -0.50 16 16 C 0.03 0.04 5.87 -20.08 -0.12 -0.08 16 17 C 0.00 0.01 7.02 24.24 0.17 0.18 16 18 C -0.17 0.09 10.26 22.40 0.23 0.32 16 19 C -0.18 -0.21 10.78 22.11 0.24 0.03 16 20 C -0.02 -0.06 6.24 24.90 0.16 0.10 16 21 C -0.04 0.05 2.97 71.24 0.21 0.26 16 22 O -0.55 -0.26 12.86 -148.98 -1.92 -2.18 16 23 Si 0.75 -0.18 32.11 68.60 2.20 2.03 16 24 O -0.18 -1.08 8.79 -6.03 -0.05 -1.13 16 25 C -0.11 0.53 9.48 22.26 0.21 0.74 16 26 C -0.05 0.27 9.47 22.25 0.21 0.48 16 27 C -0.12 0.71 7.24 31.18 0.23 0.94 16 28 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H 0.08 -0.04 8.06 -2.39 -0.02 -0.06 16 32 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.05 0.16 7.87 -2.39 -0.02 0.14 16 34 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.42 -4.20 6.48 -92.71 -0.60 -4.81 16 36 H 0.41 0.79 9.06 -74.05 -0.67 0.12 16 37 H 0.13 0.69 7.89 -2.91 -0.02 0.67 16 38 H 0.19 -1.41 7.24 -2.91 -0.02 -1.43 16 39 H 0.17 -0.43 8.06 -2.91 -0.02 -0.45 16 40 H 0.13 -1.02 7.96 -2.39 -0.02 -1.04 16 41 H 0.41 -3.49 8.74 -74.05 -0.65 -4.14 16 42 H -0.26 -0.27 7.11 99.48 0.71 0.44 16 43 H -0.31 -3.16 7.11 99.48 0.71 -2.45 16 44 H 0.17 -1.98 6.95 -2.91 -0.02 -2.01 16 45 H 0.18 -2.45 6.38 -2.91 -0.02 -2.46 16 46 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 47 H 0.08 -0.15 7.88 -2.39 -0.02 -0.17 16 Total: 0.00 -29.19 410.91 -0.50 -29.69 By element: Atomic # 1 Polarization: -21.76 SS G_CDS: -0.84 Total: -22.61 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 4.47 Total: 10.37 kcal Atomic # 7 Polarization: 1.80 SS G_CDS: -2.57 Total: -0.76 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -2.51 Total: -16.69 kcal Atomic # 14 Polarization: -0.18 SS G_CDS: 2.20 Total: 2.03 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -1.25 Total: -2.02 kcal Total: -29.19 -0.50 -29.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_12807986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.536 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds