Wall clock time and date at job start Tue Mar 9 2021 12:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81407 * 102.99986 * 2 1 4 4 H 1.08996 * 112.90286 * 43.75126 * 3 2 1 5 5 C 1.53782 * 113.61329 * 174.99713 * 3 2 1 6 6 C 1.53784 * 87.07603 * 139.98307 * 5 3 2 7 7 H 1.08995 * 113.61499 * 89.20179 * 6 5 3 8 8 C 1.52999 * 113.61200 * 220.01860 * 6 5 3 9 9 N 1.46496 * 109.47149 * 184.99964 * 8 6 5 10 10 C 1.34783 * 120.00298 * 179.97438 * 9 8 6 11 11 O 1.21577 * 119.99567 * 0.02562 * 10 9 8 12 12 C 1.47656 * 120.00174 * 180.02562 * 10 9 8 13 13 C 1.40004 * 120.45563 * 353.98532 * 12 10 9 14 14 N 1.31306 * 121.37758 * 180.02562 * 13 12 10 15 15 C 1.32828 * 121.88879 * 359.97438 * 14 13 12 16 16 N 1.37149 * 132.96102 * 180.02562 * 15 14 13 17 17 C 1.36947 * 110.11487 * 179.97438 * 16 15 14 18 18 C 1.34177 * 109.95000 * 359.97438 * 17 16 15 19 19 C 1.50700 * 126.59887 * 179.97438 * 18 17 16 20 20 O 1.42903 * 109.46997 * 105.02099 * 19 18 17 21 21 Si 1.86304 * 109.46888 * 345.02350 * 19 18 17 22 22 C 1.41017 * 120.08644 * 0.26182 * 15 14 13 23 23 C 1.39289 * 119.61492 * 359.48319 * 22 15 14 24 24 C 1.50698 * 121.02814 * 180.27519 * 23 22 15 25 25 C 1.53777 * 113.61491 * 272.49815 * 3 2 1 26 26 H 1.08997 * 109.46738 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46959 * 299.99897 * 1 2 3 28 28 H 1.08996 * 109.47074 * 59.99672 * 1 2 3 29 29 H 1.08996 * 113.61095 * 25.43836 * 5 3 2 30 30 H 1.08992 * 113.61666 * 254.52853 * 5 3 2 31 31 H 1.09005 * 109.47378 * 65.00237 * 8 6 5 32 32 H 1.08997 * 109.47434 * 305.00456 * 8 6 5 33 33 H 0.96999 * 120.00209 * 0.02562 * 9 8 6 34 34 H 1.08002 * 119.31167 * 359.97438 * 13 12 10 35 35 H 0.97005 * 124.94105 * 0.02562 * 16 15 14 36 36 H 1.08002 * 125.02318 * 179.97438 * 17 16 15 37 37 H 1.08994 * 109.46972 * 225.02675 * 19 18 17 38 38 H 0.96696 * 114.00162 * 299.99734 * 20 19 18 39 39 H 1.48500 * 110.00252 * 58.68187 * 21 19 18 40 40 H 1.48507 * 109.99802 * 179.97438 * 21 19 18 41 41 H 1.09003 * 109.46939 * 263.94041 * 24 23 22 42 42 H 1.08994 * 109.47472 * 23.94164 * 24 23 22 43 43 H 1.09001 * 109.47019 * 143.95055 * 24 23 22 44 44 H 1.09006 * 113.61522 * 105.46905 * 25 3 2 45 45 H 1.09003 * 113.61169 * 334.56866 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.6109 2.3440 0.6943 5 6 3.7284 2.0520 0.1229 6 6 3.5206 3.1738 -0.9083 7 1 3.2658 4.1351 -0.4623 8 6 4.6479 3.2766 -1.9376 9 7 4.4202 4.4413 -2.7965 10 6 5.2920 4.7325 -3.7823 11 8 6.2672 4.0283 -3.9589 12 6 5.0628 5.9067 -4.6477 13 6 3.8821 6.6508 -4.5362 14 7 3.6592 7.6977 -5.2967 15 6 4.5377 8.1038 -6.2065 16 7 4.5425 9.1414 -7.1034 17 6 5.7024 9.1293 -7.8314 18 6 6.4769 8.1053 -7.4415 19 6 7.8319 7.7431 -7.9927 20 8 8.8437 8.1247 -7.0583 21 14 8.1060 8.6369 -9.6042 22 6 5.7488 7.4030 -6.3820 23 6 6.0216 6.2908 -5.5891 24 6 7.3084 5.5222 -5.7455 25 6 2.3009 2.3816 -1.4077 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 4.3572 1.2382 -0.2381 30 1 4.0257 2.4134 1.1072 31 1 4.6665 2.3734 -2.5476 32 1 5.6019 3.3864 -1.4219 33 1 3.6423 5.0034 -2.6554 34 1 3.1386 6.3570 -3.8099 35 1 3.8285 9.7899 -7.2065 36 1 5.9561 9.8390 -8.6049 37 1 7.8799 6.6674 -8.1612 38 1 8.8598 9.0711 -6.8607 39 1 8.0114 10.1039 -9.3939 40 1 9.4393 8.2886 -10.1578 41 1 7.1426 4.6651 -6.3983 42 1 8.0680 6.1702 -6.1825 43 1 7.6452 5.1749 -4.7687 44 1 1.4456 3.0091 -1.6588 45 1 2.5395 1.6578 -2.1870 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_12890568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:48 Heat of formation + Delta-G solvation = 33.413445 kcal Electronic energy + Delta-G solvation = -27681.742040 eV Core-core repulsion = 23793.545290 eV Total energy + Delta-G solvation = -3888.196750 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.83985 -40.99547 -39.92131 -38.65813 -37.86070 -35.74563 -34.77465 -31.99418 -31.45134 -29.96712 -29.28843 -28.51960 -26.84429 -26.48362 -24.86664 -24.22360 -23.40955 -21.81606 -20.82648 -20.55079 -19.26252 -18.85598 -17.92363 -17.58047 -17.25865 -16.96606 -16.75817 -16.68043 -16.20902 -16.09687 -15.60929 -15.53037 -15.34640 -14.93225 -14.84121 -14.68485 -14.35053 -14.16848 -14.01917 -13.81269 -13.67790 -13.58882 -13.50693 -13.48457 -13.19016 -12.99054 -12.78502 -12.43870 -11.98917 -11.87021 -11.79969 -11.46847 -11.09335 -11.04394 -10.82341 -10.51758 -10.20720 -10.05877 -9.57491 -9.14338 -8.64041 -5.00900 -0.21358 -0.04759 0.73461 1.23061 1.37645 1.50016 1.58696 1.60703 1.92631 1.96901 2.13061 2.87302 3.26421 3.29939 3.35640 3.38184 3.50149 3.53272 3.59095 3.65788 3.75081 3.83305 4.05002 4.09767 4.17931 4.20568 4.24642 4.25706 4.28677 4.54429 4.56966 4.63100 4.67258 4.68097 4.74390 4.76486 4.79375 4.88358 4.95700 4.98877 5.07532 5.20214 5.24379 5.40085 5.46338 5.60319 5.79307 6.09495 6.43848 6.49478 6.85939 7.27986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.254 6.254 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.100 4.100 6 C -0.122 4.122 7 H 0.101 0.899 8 C 0.132 3.868 9 N -0.728 5.728 10 C 0.570 3.430 11 O -0.529 6.529 12 C -0.233 4.233 13 C 0.180 3.820 14 N -0.504 5.504 15 C 0.307 3.693 16 N -0.570 5.570 17 C 0.067 3.933 18 C -0.176 4.176 19 C -0.044 4.044 20 O -0.527 6.527 21 Si 0.686 3.314 22 C -0.149 4.149 23 C 0.086 3.914 24 C -0.134 4.134 25 C -0.123 4.123 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.162 0.838 35 H 0.425 0.575 36 H 0.183 0.817 37 H 0.119 0.881 38 H 0.375 0.625 39 H -0.258 1.258 40 H -0.254 1.254 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 3.730 -1.544 6.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.026 6.026 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.139 4.139 6 C -0.142 4.142 7 H 0.119 0.881 8 C 0.009 3.991 9 N -0.380 5.380 10 C 0.358 3.642 11 O -0.406 6.406 12 C -0.240 4.240 13 C 0.012 3.988 14 N -0.218 5.218 15 C 0.074 3.926 16 N -0.175 5.175 17 C -0.060 4.060 18 C -0.184 4.184 19 C -0.155 4.155 20 O -0.333 6.333 21 Si 0.586 3.414 22 C -0.156 4.156 23 C 0.077 3.923 24 C -0.189 4.189 25 C -0.163 4.163 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.234 0.766 34 H 0.178 0.822 35 H 0.264 0.736 36 H 0.200 0.800 37 H 0.137 0.863 38 H 0.222 0.778 39 H -0.183 1.183 40 H -0.178 1.178 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.116 0.884 44 H 0.092 0.908 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.297 2.850 -2.111 4.842 hybrid contribution -0.869 1.830 1.090 2.301 sum -4.166 4.680 -1.021 6.348 Atomic orbital electron populations 1.23369 0.94157 1.06615 1.04923 1.86998 1.07536 1.10401 1.97630 1.24683 1.01088 0.94281 1.01250 0.87623 1.22762 0.93333 0.97938 0.99886 1.22768 0.95738 0.98957 0.96733 0.88063 1.21369 0.98107 0.88464 0.91189 1.45869 1.27694 1.30561 1.33900 1.17862 0.82490 0.84047 0.79792 1.90770 1.28421 1.50705 1.70712 1.20441 0.98561 1.01375 1.03668 1.22496 0.94139 0.88024 0.94182 1.66436 1.31875 1.16593 1.06849 1.18496 0.91806 0.90037 0.92242 1.41510 1.18983 1.25978 1.31056 1.21795 0.85868 1.00259 0.98042 1.20614 0.98389 0.98423 1.00956 1.24413 0.83570 1.06569 1.00905 1.86620 1.54250 1.29546 1.62878 0.95126 0.86821 0.79266 0.80160 1.19470 0.96236 0.98668 1.01199 1.19931 0.94510 0.90093 0.87726 1.21272 0.92902 0.99468 1.05284 1.23423 0.98125 0.99143 0.95603 0.88085 0.90513 0.90420 0.88572 0.89891 0.90743 0.90878 0.76649 0.82151 0.73615 0.79981 0.86317 0.77783 1.18286 1.17814 0.89914 0.89878 0.88397 0.90809 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.14 10.76 101.05 1.09 1.23 16 2 S -0.25 -0.25 22.17 -107.50 -2.38 -2.63 16 3 C -0.08 0.12 4.28 -25.92 -0.11 0.01 16 4 H 0.11 -0.21 8.14 -51.93 -0.42 -0.63 16 5 C -0.10 0.18 7.23 -25.92 -0.19 0.00 16 6 C -0.12 0.34 3.75 -89.81 -0.34 0.01 16 7 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 8 C 0.13 -0.12 5.51 -4.04 -0.02 -0.15 16 9 N -0.73 0.56 5.51 -61.31 -0.34 0.22 16 10 C 0.57 1.41 7.72 -12.41 -0.10 1.31 16 11 O -0.53 -2.96 13.50 5.30 0.07 -2.89 16 12 C -0.23 -0.51 5.89 -104.82 -0.62 -1.13 16 13 C 0.18 0.15 10.67 -17.11 -0.18 -0.03 16 14 N -0.50 -1.21 10.37 -11.96 -0.12 -1.34 16 15 C 0.31 0.64 8.42 -155.71 -1.31 -0.67 16 16 N -0.57 0.57 6.04 -12.12 -0.07 0.50 16 17 C 0.07 -0.13 10.44 -16.70 -0.17 -0.31 16 18 C -0.18 -0.01 5.57 -102.73 -0.57 -0.58 16 19 C -0.04 0.03 1.88 36.01 0.07 0.09 16 20 O -0.53 -0.41 11.67 -35.23 -0.41 -0.82 16 21 Si 0.69 -1.50 30.83 -169.99 -5.24 -6.74 16 22 C -0.15 -0.36 6.16 -105.13 -0.65 -1.01 16 23 C 0.09 0.27 5.98 -103.67 -0.62 -0.35 16 24 C -0.13 -0.41 8.46 36.00 0.30 -0.10 16 25 C -0.12 0.28 7.22 -25.92 -0.19 0.09 16 26 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 27 H 0.08 -0.14 8.14 -51.92 -0.42 -0.56 16 28 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 29 H 0.10 -0.09 8.06 -51.93 -0.42 -0.51 16 30 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 31 H 0.07 0.02 7.84 -51.93 -0.41 -0.39 16 32 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.40 -1.34 6.55 -40.82 -0.27 -1.61 16 34 H 0.16 -0.45 6.43 -52.49 -0.34 -0.79 16 35 H 0.43 -1.50 8.96 -40.82 -0.37 -1.87 16 36 H 0.18 -0.92 6.28 -52.49 -0.33 -1.25 16 37 H 0.12 -0.07 7.13 -51.93 -0.37 -0.44 16 38 H 0.37 -0.79 8.70 45.56 0.40 -0.40 16 39 H -0.26 0.29 7.00 56.52 0.40 0.69 16 40 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 41 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.23 4.79 -51.93 -0.25 -0.02 16 43 H 0.10 0.45 5.96 -51.93 -0.31 0.14 16 44 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 45 H 0.10 -0.11 7.85 -51.93 -0.41 -0.52 16 LS Contribution 375.95 15.07 5.67 5.67 Total: 0.00 -9.05 375.95 -12.51 -21.56 By element: Atomic # 1 Polarization: -5.87 SS G_CDS: -6.07 Total: -11.95 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -3.61 Total: -1.59 kcal Atomic # 7 Polarization: -0.08 SS G_CDS: -0.53 Total: -0.62 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.34 Total: -3.71 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: -5.24 Total: -6.74 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.38 Total: -2.63 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -9.05 -12.51 -21.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_12890568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.977 kcal (2) G-P(sol) polarization free energy of solvation -9.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds