Wall clock time and date at job start Tue Mar 9 2021 12:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81407 * 102.99986 * 2 1 4 4 H 1.08996 * 112.90286 * 43.75126 * 3 2 1 5 5 C 1.53782 * 113.61329 * 174.99713 * 3 2 1 6 6 C 1.53784 * 87.07603 * 139.98307 * 5 3 2 7 7 H 1.08995 * 113.61499 * 89.20179 * 6 5 3 8 8 C 1.52999 * 113.61200 * 220.01860 * 6 5 3 9 9 N 1.46496 * 109.47149 * 184.99964 * 8 6 5 10 10 C 1.34783 * 120.00298 * 179.97438 * 9 8 6 11 11 O 1.21577 * 119.99567 * 0.02562 * 10 9 8 12 12 C 1.47656 * 120.00174 * 180.02562 * 10 9 8 13 13 C 1.40004 * 120.45563 * 353.98532 * 12 10 9 14 14 N 1.31306 * 121.37758 * 180.02562 * 13 12 10 15 15 C 1.32828 * 121.88879 * 359.97438 * 14 13 12 16 16 N 1.37149 * 132.96102 * 180.02562 * 15 14 13 17 17 C 1.36947 * 110.11487 * 179.97438 * 16 15 14 18 18 C 1.34177 * 109.95000 * 359.97438 * 17 16 15 19 19 C 1.50700 * 126.59887 * 179.97438 * 18 17 16 20 20 O 1.42903 * 109.46997 * 105.02099 * 19 18 17 21 21 Si 1.86304 * 109.46888 * 345.02350 * 19 18 17 22 22 C 1.41017 * 120.08644 * 0.26182 * 15 14 13 23 23 C 1.39289 * 119.61492 * 359.48319 * 22 15 14 24 24 C 1.50698 * 121.02814 * 180.27519 * 23 22 15 25 25 C 1.53777 * 113.61491 * 272.49815 * 3 2 1 26 26 H 1.08997 * 109.46738 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46959 * 299.99897 * 1 2 3 28 28 H 1.08996 * 109.47074 * 59.99672 * 1 2 3 29 29 H 1.08996 * 113.61095 * 25.43836 * 5 3 2 30 30 H 1.08992 * 113.61666 * 254.52853 * 5 3 2 31 31 H 1.09005 * 109.47378 * 65.00237 * 8 6 5 32 32 H 1.08997 * 109.47434 * 305.00456 * 8 6 5 33 33 H 0.96999 * 120.00209 * 0.02562 * 9 8 6 34 34 H 1.08002 * 119.31167 * 359.97438 * 13 12 10 35 35 H 0.97005 * 124.94105 * 0.02562 * 16 15 14 36 36 H 1.08002 * 125.02318 * 179.97438 * 17 16 15 37 37 H 1.08994 * 109.46972 * 225.02675 * 19 18 17 38 38 H 0.96696 * 114.00162 * 299.99734 * 20 19 18 39 39 H 1.48500 * 110.00252 * 58.68187 * 21 19 18 40 40 H 1.48507 * 109.99802 * 179.97438 * 21 19 18 41 41 H 1.09003 * 109.46939 * 263.94041 * 24 23 22 42 42 H 1.08994 * 109.47472 * 23.94164 * 24 23 22 43 43 H 1.09001 * 109.47019 * 143.95055 * 24 23 22 44 44 H 1.09006 * 113.61522 * 105.46905 * 25 3 2 45 45 H 1.09003 * 113.61169 * 334.56866 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.6109 2.3440 0.6943 5 6 3.7284 2.0520 0.1229 6 6 3.5206 3.1738 -0.9083 7 1 3.2658 4.1351 -0.4623 8 6 4.6479 3.2766 -1.9376 9 7 4.4202 4.4413 -2.7965 10 6 5.2920 4.7325 -3.7823 11 8 6.2672 4.0283 -3.9589 12 6 5.0628 5.9067 -4.6477 13 6 3.8821 6.6508 -4.5362 14 7 3.6592 7.6977 -5.2967 15 6 4.5377 8.1038 -6.2065 16 7 4.5425 9.1414 -7.1034 17 6 5.7024 9.1293 -7.8314 18 6 6.4769 8.1053 -7.4415 19 6 7.8319 7.7431 -7.9927 20 8 8.8437 8.1247 -7.0583 21 14 8.1060 8.6369 -9.6042 22 6 5.7488 7.4030 -6.3820 23 6 6.0216 6.2908 -5.5891 24 6 7.3084 5.5222 -5.7455 25 6 2.3009 2.3816 -1.4077 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 4.3572 1.2382 -0.2381 30 1 4.0257 2.4134 1.1072 31 1 4.6665 2.3734 -2.5476 32 1 5.6019 3.3864 -1.4219 33 1 3.6423 5.0034 -2.6554 34 1 3.1386 6.3570 -3.8099 35 1 3.8285 9.7899 -7.2065 36 1 5.9561 9.8390 -8.6049 37 1 7.8799 6.6674 -8.1612 38 1 8.8598 9.0711 -6.8607 39 1 8.0114 10.1039 -9.3939 40 1 9.4393 8.2886 -10.1578 41 1 7.1426 4.6651 -6.3983 42 1 8.0680 6.1702 -6.1825 43 1 7.6452 5.1749 -4.7687 44 1 1.4456 3.0091 -1.6588 45 1 2.5395 1.6578 -2.1870 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_12890568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:47 Heat of formation + Delta-G solvation = 34.299008 kcal Electronic energy + Delta-G solvation = -27681.703639 eV Core-core repulsion = 23793.545290 eV Total energy + Delta-G solvation = -3888.158349 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.85249 -41.07704 -39.86025 -38.71573 -37.85485 -35.83890 -34.89672 -32.00557 -31.48823 -29.87933 -29.30487 -28.61421 -26.70295 -26.44276 -24.89271 -24.23127 -23.42829 -21.91255 -20.76678 -20.47857 -19.29623 -18.88260 -17.90562 -17.60878 -17.25172 -16.98291 -16.77367 -16.67051 -16.24765 -16.13129 -15.60153 -15.51628 -15.31880 -14.95102 -14.84141 -14.68332 -14.31923 -14.09019 -13.98718 -13.95100 -13.74259 -13.57827 -13.47995 -13.42824 -13.22621 -13.15352 -12.75179 -12.46425 -11.88017 -11.81434 -11.72682 -11.33737 -11.19799 -11.15491 -10.78734 -10.59162 -10.27655 -10.15769 -9.61387 -9.13036 -8.70016 -4.83701 -0.34433 -0.07661 0.79247 1.35692 1.42240 1.62646 1.65775 1.68630 1.80839 2.05236 2.08568 2.76465 3.30560 3.41531 3.44962 3.47763 3.54232 3.63730 3.65434 3.70887 3.77976 3.83558 4.14061 4.16879 4.27721 4.31329 4.32218 4.32646 4.38181 4.51237 4.60475 4.65237 4.69505 4.76760 4.78453 4.78910 4.85577 4.87154 4.99185 5.00284 5.06674 5.18130 5.26052 5.33220 5.41222 5.50669 5.73759 6.22150 6.48238 6.59920 6.83151 7.17723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.321 6.321 3 C -0.073 4.073 4 H 0.119 0.881 5 C -0.104 4.104 6 C -0.104 4.104 7 H 0.124 0.876 8 C 0.134 3.866 9 N -0.710 5.710 10 C 0.567 3.433 11 O -0.568 6.568 12 C -0.241 4.241 13 C 0.181 3.819 14 N -0.516 5.516 15 C 0.289 3.711 16 N -0.560 5.560 17 C 0.091 3.909 18 C -0.197 4.197 19 C -0.059 4.059 20 O -0.550 6.550 21 Si 0.780 3.220 22 C -0.166 4.166 23 C 0.062 3.938 24 C -0.122 4.122 25 C -0.118 4.118 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.414 0.586 34 H 0.195 0.805 35 H 0.438 0.562 36 H 0.221 0.779 37 H 0.109 0.891 38 H 0.385 0.615 39 H -0.258 1.258 40 H -0.309 1.309 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 5.996 -1.849 8.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.093 6.093 3 C -0.201 4.201 4 H 0.137 0.863 5 C -0.143 4.143 6 C -0.124 4.124 7 H 0.142 0.858 8 C 0.011 3.989 9 N -0.363 5.363 10 C 0.355 3.645 11 O -0.449 6.449 12 C -0.248 4.248 13 C 0.013 3.987 14 N -0.229 5.229 15 C 0.055 3.945 16 N -0.166 5.166 17 C -0.036 4.036 18 C -0.204 4.204 19 C -0.167 4.167 20 O -0.358 6.358 21 Si 0.683 3.317 22 C -0.173 4.173 23 C 0.053 3.947 24 C -0.178 4.178 25 C -0.158 4.158 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.252 0.748 34 H 0.212 0.788 35 H 0.280 0.720 36 H 0.237 0.763 37 H 0.127 0.873 38 H 0.234 0.766 39 H -0.183 1.183 40 H -0.237 1.237 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.256 5.140 -2.379 7.727 hybrid contribution -0.243 1.101 1.191 1.640 sum -5.500 6.242 -1.188 8.403 Atomic orbital electron populations 1.23363 0.91700 1.06993 1.05738 1.87234 1.10462 1.13764 1.97794 1.24751 1.01223 0.92020 1.02115 0.86322 1.22785 0.93075 0.97906 1.00538 1.22688 0.94518 0.99599 0.95633 0.85790 1.21332 0.98621 0.87728 0.91249 1.45728 1.27408 1.30432 1.32699 1.18028 0.82342 0.83859 0.80232 1.90752 1.30197 1.52042 1.71925 1.20510 0.99157 1.01498 1.03621 1.22969 0.94129 0.87295 0.94355 1.66521 1.32080 1.17054 1.07236 1.18768 0.91800 0.90991 0.92923 1.41599 1.19587 1.25322 1.30114 1.22324 0.84561 0.99435 0.97301 1.20704 0.98979 0.99369 1.01332 1.24744 0.83215 1.06737 1.02039 1.86586 1.54811 1.30728 1.63701 0.94081 0.83447 0.77385 0.76819 1.19749 0.97108 0.98637 1.01815 1.20061 0.94694 0.90965 0.88932 1.21086 0.93455 0.99266 1.03950 1.23363 0.98811 0.98914 0.94725 0.87999 0.89611 0.89590 0.90001 0.89097 0.92249 0.91887 0.74826 0.78814 0.72027 0.76321 0.87331 0.76551 1.18333 1.23694 0.90509 0.89964 0.90307 0.89124 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.27 10.76 113.37 1.22 1.49 16 2 S -0.32 -0.88 22.17 -56.49 -1.25 -2.14 16 3 C -0.07 0.23 4.28 31.12 0.13 0.36 16 4 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 5 C -0.10 0.37 7.23 31.12 0.23 0.59 16 6 C -0.10 0.66 3.75 -10.27 -0.04 0.62 16 7 H 0.12 -1.27 8.14 -2.39 -0.02 -1.29 16 8 C 0.13 -0.15 5.51 86.38 0.48 0.32 16 9 N -0.71 0.98 5.51 -466.15 -2.57 -1.59 16 10 C 0.57 3.63 7.72 86.73 0.67 4.30 16 11 O -0.57 -7.93 13.50 -3.96 -0.05 -7.99 16 12 C -0.24 -1.33 5.89 -19.99 -0.12 -1.45 16 13 C 0.18 0.24 10.67 85.20 0.91 1.15 16 14 N -0.52 -2.21 10.37 -191.75 -1.99 -4.20 16 15 C 0.29 1.10 8.42 134.02 1.13 2.23 16 16 N -0.56 1.98 6.04 -192.25 -1.16 0.82 16 17 C 0.09 -0.53 10.44 82.97 0.87 0.34 16 18 C -0.20 0.02 5.57 -18.64 -0.10 -0.08 16 19 C -0.06 0.04 1.88 71.24 0.13 0.17 16 20 O -0.55 -1.47 11.67 -148.98 -1.74 -3.21 16 21 Si 0.78 -4.02 30.83 68.60 2.11 -1.90 16 22 C -0.17 -0.92 6.16 -20.19 -0.12 -1.04 16 23 C 0.06 0.50 5.98 -19.24 -0.12 0.38 16 24 C -0.12 -1.11 8.46 71.24 0.60 -0.51 16 25 C -0.12 0.62 7.22 31.12 0.22 0.84 16 26 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 28 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.08 -0.03 8.06 -2.39 -0.02 -0.05 16 30 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.06 0.14 7.84 -2.38 -0.02 0.12 16 32 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.41 -3.30 6.55 -92.71 -0.61 -3.91 16 34 H 0.20 -1.40 6.43 -2.91 -0.02 -1.42 16 35 H 0.44 -3.98 8.96 -92.70 -0.83 -4.81 16 36 H 0.22 -3.01 6.28 -2.91 -0.02 -3.03 16 37 H 0.11 0.07 7.13 -2.39 -0.02 0.05 16 38 H 0.39 -1.45 8.70 -74.06 -0.64 -2.09 16 39 H -0.26 1.29 7.00 99.48 0.70 1.99 16 40 H -0.31 -1.28 7.11 99.48 0.71 -0.57 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 0.70 4.79 -2.39 -0.01 0.69 16 43 H 0.08 1.01 5.96 -2.39 -0.01 0.99 16 44 H 0.09 -0.74 8.14 -2.38 -0.02 -0.75 16 45 H 0.08 -0.14 7.85 -2.39 -0.02 -0.16 16 Total: 0.00 -24.62 375.95 -1.55 -26.17 By element: Atomic # 1 Polarization: -14.72 SS G_CDS: -0.99 Total: -15.71 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 6.09 Total: 9.74 kcal Atomic # 7 Polarization: 0.75 SS G_CDS: -5.72 Total: -4.96 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.79 Total: -11.20 kcal Atomic # 14 Polarization: -4.02 SS G_CDS: 2.11 Total: -1.90 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -1.25 Total: -2.14 kcal Total: -24.62 -1.55 -26.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_12890568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.470 kcal (2) G-P(sol) polarization free energy of solvation -24.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds