Wall clock time and date at job start Tue Mar 9 2021 12:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81404 * 102.99741 * 2 1 4 4 H 1.08998 * 112.85317 * 43.80351 * 3 2 1 5 5 C 1.53785 * 113.61494 * 175.00283 * 3 2 1 6 6 C 1.53779 * 87.08084 * 140.06299 * 5 3 2 7 7 H 1.09005 * 113.61609 * 89.19873 * 6 5 3 8 8 C 1.53008 * 113.61460 * 220.01807 * 6 5 3 9 9 N 1.46493 * 109.47098 * 185.00037 * 8 6 5 10 10 C 1.34780 * 120.00121 * 179.97438 * 9 8 6 11 11 O 1.21517 * 119.99680 * 359.97438 * 10 9 8 12 12 C 1.48169 * 120.00175 * 180.02562 * 10 9 8 13 13 N 1.32713 * 119.72279 * 359.97305 * 12 10 9 14 14 C 1.31523 * 121.64208 * 179.72918 * 13 12 10 15 15 C 1.38565 * 120.89905 * 0.58356 * 14 13 12 16 16 C 1.50699 * 120.32080 * 179.70381 * 15 14 13 17 17 O 1.42903 * 109.47152 * 244.73034 * 16 15 14 18 18 Si 1.86305 * 109.47184 * 4.72506 * 16 15 14 19 19 C 1.38625 * 119.35223 * 359.43456 * 15 14 13 20 20 C 1.38582 * 118.48871 * 0.26877 * 19 15 14 21 21 C 1.53782 * 87.08275 * 334.56506 * 6 5 3 22 22 H 1.08999 * 109.47280 * 299.99886 * 1 2 3 23 23 H 1.08995 * 109.47548 * 60.00293 * 1 2 3 24 24 H 1.09001 * 109.46840 * 180.02562 * 1 2 3 25 25 H 1.09000 * 113.61436 * 25.51606 * 5 3 2 26 26 H 1.08997 * 113.61098 * 254.61140 * 5 3 2 27 27 H 1.08992 * 109.47097 * 64.99922 * 8 6 5 28 28 H 1.09003 * 109.46658 * 304.99937 * 8 6 5 29 29 H 0.97003 * 120.00560 * 0.02562 * 9 8 6 30 30 H 1.08001 * 119.55123 * 180.31826 * 14 13 12 31 31 H 1.08997 * 109.47198 * 124.72711 * 16 15 14 32 32 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 33 33 H 1.48499 * 109.99670 * 178.68093 * 18 16 15 34 34 H 1.48497 * 110.00233 * 300.00062 * 18 16 15 35 35 H 1.08000 * 120.75203 * 180.29565 * 19 15 14 36 36 H 1.08005 * 120.47121 * 179.97438 * 20 19 15 37 37 H 1.09003 * 113.61609 * 139.98014 * 21 6 5 38 38 H 1.08995 * 113.61568 * 270.88157 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 1 1.6108 2.3431 0.6952 5 6 3.7282 2.0521 0.1227 6 6 3.5200 3.1753 -0.9068 7 1 3.2651 4.1361 -0.4593 8 6 4.6470 3.2798 -1.9363 9 7 4.4188 4.4456 -2.7935 10 6 5.2903 4.7383 -3.7791 11 8 6.2656 4.0354 -3.9563 12 6 5.0598 5.9178 -4.6458 13 7 3.9932 6.6820 -4.4470 14 6 3.7546 7.7406 -5.1902 15 6 4.6088 8.0920 -6.2231 16 6 4.3193 9.3039 -7.0708 17 8 4.0583 8.8939 -8.4147 18 14 2.8298 10.1944 -6.3930 19 6 5.7351 7.3211 -6.4655 20 6 5.9643 6.2149 -5.6628 21 6 2.3002 2.3836 -1.4069 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 4.3572 1.2389 -0.2395 26 1 4.0257 2.4122 1.1076 27 1 4.6656 2.3775 -2.5475 28 1 5.6011 3.3891 -1.4207 29 1 3.6409 5.0074 -2.6514 30 1 2.8787 8.3417 -4.9955 31 1 5.1803 9.9721 -7.0555 32 1 3.8639 9.6242 -9.0180 33 1 2.5531 11.4091 -7.2013 34 1 1.6491 9.2941 -6.4086 35 1 6.4186 7.5770 -7.2616 36 1 6.8317 5.5918 -5.8236 37 1 1.4448 3.0112 -1.6569 38 1 2.5387 1.6611 -2.1873 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_13287726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:04 Heat of formation + Delta-G solvation = -0.364499 kcal Electronic energy + Delta-G solvation = -20550.681540 eV Core-core repulsion = 17293.973498 eV Total energy + Delta-G solvation = -3256.708042 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.87769 -40.57368 -39.63430 -37.95100 -35.70340 -33.92840 -33.03676 -30.05462 -29.61198 -27.53629 -26.71334 -25.03043 -24.42568 -23.25657 -21.88094 -20.68719 -19.29341 -18.66532 -18.19130 -17.55083 -16.88720 -16.83107 -16.70239 -16.34774 -16.09719 -15.52424 -15.30165 -15.13653 -14.97325 -14.54445 -14.28942 -14.16798 -14.05980 -14.00335 -13.93115 -13.50049 -13.45892 -12.81734 -12.54321 -12.12417 -11.93900 -11.81985 -11.42440 -11.36258 -11.07204 -10.83717 -10.75977 -10.53796 -10.35873 -10.08869 -8.71334 -4.92779 -0.60188 0.07600 0.77573 1.24072 1.52734 1.60595 1.63885 1.94917 1.95505 2.62563 2.92195 3.27609 3.39302 3.44289 3.61234 3.64126 3.71799 3.78556 3.80114 3.89876 4.15162 4.18918 4.29878 4.30968 4.34796 4.38579 4.57721 4.60513 4.73281 4.75634 4.80012 4.85191 4.88614 4.96723 4.99221 5.03677 5.25991 5.37230 5.43729 6.25608 6.54549 6.60514 7.03010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.318 6.318 3 C -0.072 4.072 4 H 0.119 0.881 5 C -0.101 4.101 6 C -0.105 4.105 7 H 0.122 0.878 8 C 0.130 3.870 9 N -0.696 5.696 10 C 0.567 3.433 11 O -0.569 6.569 12 C 0.063 3.937 13 N -0.458 5.458 14 C 0.099 3.901 15 C -0.104 4.104 16 C -0.083 4.083 17 O -0.557 6.557 18 Si 0.763 3.237 19 C -0.054 4.054 20 C -0.117 4.117 21 C -0.121 4.121 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.420 0.580 30 H 0.184 0.816 31 H 0.109 0.891 32 H 0.400 0.600 33 H -0.282 1.282 34 H -0.291 1.291 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.085 0.915 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 7.366 1.449 8.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.089 6.089 3 C -0.200 4.200 4 H 0.137 0.863 5 C -0.140 4.140 6 C -0.125 4.125 7 H 0.140 0.860 8 C 0.006 3.994 9 N -0.347 5.347 10 C 0.352 3.648 11 O -0.448 6.448 12 C -0.075 4.075 13 N -0.169 5.169 14 C -0.061 4.061 15 C -0.106 4.106 16 C -0.192 4.192 17 O -0.368 6.368 18 Si 0.667 3.333 19 C -0.080 4.080 20 C -0.138 4.138 21 C -0.160 4.160 22 H 0.105 0.895 23 H 0.102 0.898 24 H 0.121 0.879 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.258 0.742 30 H 0.200 0.800 31 H 0.127 0.873 32 H 0.251 0.749 33 H -0.209 1.209 34 H -0.219 1.219 35 H 0.181 0.819 36 H 0.168 0.832 37 H 0.104 0.896 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.781 5.365 2.176 6.422 hybrid contribution -0.473 1.149 -1.960 2.320 sum -3.253 6.513 0.216 7.284 Atomic orbital electron populations 1.23367 0.91774 1.07023 1.05709 1.87194 1.10391 1.13572 1.97780 1.24734 1.01362 0.92101 1.01802 0.86288 1.22780 0.92990 0.97699 1.00526 1.22686 0.94447 0.99654 0.95726 0.85993 1.21452 0.99022 0.87530 0.91390 1.45773 1.27265 1.29860 1.31823 1.18083 0.82547 0.83555 0.80594 1.90793 1.30569 1.51696 1.71695 1.21091 0.93462 0.95997 0.96920 1.67505 1.17615 1.04702 1.27092 1.22978 0.98660 0.93000 0.91413 1.20788 0.95491 0.97626 0.96721 1.24932 1.11615 0.97550 0.85087 1.86537 1.92545 1.38904 1.18791 0.94173 0.74360 0.76004 0.88767 1.21757 0.96572 0.92108 0.97528 1.22291 1.00035 0.97604 0.93829 1.23364 0.98811 0.98895 0.94971 0.89542 0.89752 0.87914 0.89787 0.88782 0.92043 0.91190 0.74164 0.79981 0.87310 0.74868 1.20860 1.21859 0.81941 0.83198 0.89599 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.20 10.76 113.37 1.22 1.42 16 2 S -0.32 -1.06 22.18 -56.49 -1.25 -2.31 16 3 C -0.07 0.16 4.27 31.12 0.13 0.29 16 4 H 0.12 -0.55 8.14 -2.39 -0.02 -0.56 16 5 C -0.10 0.30 7.23 31.12 0.23 0.52 16 6 C -0.10 0.48 3.75 -10.26 -0.04 0.44 16 7 H 0.12 -0.96 8.14 -2.38 -0.02 -0.98 16 8 C 0.13 0.06 5.51 86.38 0.48 0.53 16 9 N -0.70 -1.33 5.54 -465.66 -2.58 -3.92 16 10 C 0.57 4.50 7.81 86.88 0.68 5.18 16 11 O -0.57 -8.33 16.32 -3.77 -0.06 -8.39 16 12 C 0.06 0.35 6.75 41.91 0.28 0.63 16 13 N -0.46 -1.36 9.54 -184.91 -1.76 -3.13 16 14 C 0.10 -0.03 9.84 84.82 0.83 0.80 16 15 C -0.10 0.10 5.40 -19.69 -0.11 -0.01 16 16 C -0.08 0.43 2.81 71.24 0.20 0.63 16 17 O -0.56 1.13 12.82 -148.98 -1.91 -0.78 16 18 Si 0.76 -4.83 29.87 68.60 2.05 -2.78 16 19 C -0.05 -0.01 9.83 22.44 0.22 0.21 16 20 C -0.12 -0.44 9.63 22.61 0.22 -0.22 16 21 C -0.12 0.39 7.22 31.12 0.22 0.61 16 22 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 23 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 24 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 25 H 0.08 -0.02 8.06 -2.39 -0.02 -0.04 16 26 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H 0.06 0.21 7.84 -2.39 -0.02 0.20 16 28 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.42 -0.75 7.80 -92.71 -0.72 -1.47 16 30 H 0.18 -0.97 4.88 -2.91 -0.01 -0.98 16 31 H 0.11 -1.08 7.96 -2.39 -0.02 -1.10 16 32 H 0.40 -3.98 8.74 -74.06 -0.65 -4.63 16 33 H -0.28 0.53 7.11 99.48 0.71 1.23 16 34 H -0.29 -0.18 7.06 99.48 0.70 0.52 16 35 H 0.16 -0.63 8.06 -2.91 -0.02 -0.65 16 36 H 0.15 0.54 7.64 -2.91 -0.02 0.52 16 37 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.08 0.01 7.86 -2.39 -0.02 0.00 16 Total: 0.00 -18.70 335.25 -1.21 -19.91 By element: Atomic # 1 Polarization: -9.39 SS G_CDS: -0.25 Total: -9.64 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 4.57 Total: 11.04 kcal Atomic # 7 Polarization: -2.70 SS G_CDS: -4.35 Total: -7.04 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -1.97 Total: -9.17 kcal Atomic # 14 Polarization: -4.83 SS G_CDS: 2.05 Total: -2.78 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -1.25 Total: -2.31 kcal Total: -18.70 -1.21 -19.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_13287726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.543 kcal (2) G-P(sol) polarization free energy of solvation -18.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds