Wall clock time and date at job start Tue Mar 9 2021 12:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00088 * 2 1 4 4 H 1.09003 * 112.84939 * 43.80712 * 3 2 1 5 5 C 1.53784 * 113.61310 * 175.00036 * 3 2 1 6 6 C 1.53781 * 87.07913 * 139.98423 * 5 3 2 7 7 H 1.08997 * 113.61561 * 89.12007 * 6 5 3 8 8 C 1.53005 * 113.60933 * 219.93427 * 6 5 3 9 9 N 1.46504 * 109.46678 * 184.99653 * 8 6 5 10 10 C 1.34778 * 119.99824 * 179.97438 * 9 8 6 11 11 O 1.21591 * 119.99645 * 0.02562 * 10 9 8 12 12 C 1.47603 * 120.00050 * 180.02562 * 10 9 8 13 13 C 1.39712 * 120.08668 * 0.02562 * 12 10 9 14 14 C 1.37720 * 119.91086 * 179.97438 * 13 12 10 15 15 C 1.50696 * 119.95945 * 180.02562 * 14 13 12 16 16 C 1.38977 * 120.08836 * 359.97438 * 14 13 12 17 17 O 1.35708 * 119.91337 * 180.02562 * 16 14 13 18 18 C 1.39017 * 120.17558 * 0.02562 * 16 14 13 19 19 C 1.50697 * 119.95567 * 180.02562 * 18 16 14 20 20 O 1.42900 * 109.47068 * 284.99983 * 19 18 16 21 21 Si 1.86297 * 109.47363 * 165.00173 * 19 18 16 22 22 C 1.37684 * 120.09164 * 359.78834 * 18 16 14 23 23 C 1.53780 * 113.61309 * 272.49747 * 3 2 1 24 24 H 1.09002 * 109.46881 * 299.99990 * 1 2 3 25 25 H 1.09000 * 109.46946 * 60.00038 * 1 2 3 26 26 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 27 27 H 1.09004 * 113.61147 * 254.52856 * 5 3 2 28 28 H 1.09000 * 113.61360 * 25.42853 * 5 3 2 29 29 H 1.08993 * 109.47102 * 304.99873 * 8 6 5 30 30 H 1.08996 * 109.47287 * 64.99932 * 8 6 5 31 31 H 0.96996 * 120.00242 * 0.02562 * 9 8 6 32 32 H 1.08001 * 120.04416 * 359.95174 * 13 12 10 33 33 H 1.09002 * 109.47198 * 89.99157 * 15 14 13 34 34 H 1.09000 * 109.47543 * 209.99542 * 15 14 13 35 35 H 1.09003 * 109.46821 * 329.99688 * 15 14 13 36 36 H 0.96704 * 114.00396 * 89.99893 * 17 16 14 37 37 H 1.08998 * 109.47474 * 45.00300 * 19 18 16 38 38 H 0.96706 * 114.00370 * 179.97438 * 20 19 18 39 39 H 1.48507 * 110.00090 * 298.68076 * 21 19 18 40 40 H 1.48504 * 110.00325 * 59.99745 * 21 19 18 41 41 H 1.07999 * 120.04991 * 180.23387 * 22 18 16 42 42 H 1.08996 * 113.61507 * 334.56252 * 23 3 2 43 43 H 1.08996 * 113.61313 * 105.47639 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7284 2.0519 0.1228 6 6 3.5206 3.1738 -0.9083 7 1 3.2644 4.1348 -0.4623 8 6 4.6490 3.2778 -1.9364 9 7 4.4210 4.4425 -2.7954 10 6 5.2936 4.7347 -3.7801 11 8 6.2698 4.0314 -3.9558 12 6 5.0642 5.9084 -4.6452 13 6 3.9434 6.7181 -4.4445 14 6 3.7332 7.8126 -5.2535 15 6 2.5250 8.6870 -5.0377 16 6 4.6345 8.1125 -6.2680 17 8 4.4242 9.1923 -7.0628 18 6 5.7509 7.3094 -6.4709 19 6 6.7253 7.6395 -7.5721 20 8 6.1579 7.2807 -8.8336 21 14 8.3054 6.6885 -7.3090 22 6 5.9702 6.2155 -5.6640 23 6 2.3008 2.3815 -1.4077 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 4.0256 2.4133 1.1073 28 1 4.3572 1.2380 -0.2381 29 1 5.6022 3.3884 -1.4196 30 1 4.6691 2.3748 -2.5465 31 1 3.6424 5.0037 -2.6550 32 1 3.2426 6.4857 -3.6563 33 1 2.7729 9.4823 -4.3347 34 1 2.2186 9.1244 -5.9879 35 1 1.7095 8.0867 -4.6342 36 1 4.8263 10.0076 -6.7332 37 1 6.9384 8.7084 -7.5604 38 1 6.7314 7.4660 -9.5899 39 1 8.9221 7.0761 -6.0148 40 1 8.0286 5.2295 -7.3228 41 1 6.8398 5.5942 -5.8198 42 1 2.5395 1.6578 -2.1870 43 1 1.4457 3.0090 -1.6588 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_13287732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:08 Heat of formation + Delta-G solvation = -57.923796 kcal Electronic energy + Delta-G solvation = -24797.396377 eV Core-core repulsion = 21129.398477 eV Total energy + Delta-G solvation = -3667.997900 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72597 -40.67292 -39.74679 -37.76030 -37.52920 -35.65380 -34.14976 -32.17216 -30.02975 -29.33645 -28.13724 -26.90712 -26.83213 -25.11450 -23.62073 -22.02699 -21.59277 -20.61961 -19.58485 -18.74893 -18.42910 -17.92369 -17.33698 -16.93654 -16.68767 -16.41392 -16.22123 -15.90051 -15.42537 -15.27286 -15.03741 -14.86596 -14.78549 -14.47717 -14.27023 -14.17758 -13.91203 -13.69613 -13.65901 -13.63199 -13.47944 -13.07689 -12.97532 -12.81670 -12.60204 -12.05424 -11.92938 -11.91388 -11.53407 -11.52380 -11.01299 -10.83889 -10.30646 -10.20736 -10.03173 -9.69260 -8.67704 -4.98531 -0.41488 0.01391 0.69451 1.26220 1.54889 1.60764 1.69465 1.99534 2.02696 2.54740 2.97604 3.22788 3.26724 3.30259 3.44716 3.53422 3.58899 3.61029 3.75346 3.90038 3.99829 4.08537 4.14740 4.17430 4.18211 4.25242 4.33596 4.48058 4.49493 4.56393 4.56936 4.60338 4.61903 4.69967 4.73129 4.80477 4.89073 4.94811 5.03766 5.05044 5.17296 5.22056 5.33031 5.48100 6.36586 6.50183 6.65063 7.12430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.253 6.253 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.100 4.100 6 C -0.122 4.122 7 H 0.101 0.899 8 C 0.130 3.870 9 N -0.724 5.724 10 C 0.560 3.440 11 O -0.533 6.533 12 C -0.138 4.138 13 C -0.066 4.066 14 C -0.117 4.117 15 C -0.114 4.114 16 C 0.162 3.838 17 O -0.482 6.482 18 C -0.106 4.106 19 C -0.060 4.060 20 O -0.538 6.538 21 Si 0.676 3.324 22 C -0.053 4.053 23 C -0.124 4.124 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.400 0.600 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.393 0.607 37 H 0.073 0.927 38 H 0.382 0.618 39 H -0.252 1.252 40 H -0.244 1.244 41 H 0.139 0.861 42 H 0.098 0.902 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 5.779 1.129 6.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.025 6.025 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.139 4.139 6 C -0.142 4.142 7 H 0.119 0.881 8 C 0.007 3.993 9 N -0.376 5.376 10 C 0.347 3.653 11 O -0.410 6.410 12 C -0.141 4.141 13 C -0.085 4.085 14 C -0.117 4.117 15 C -0.170 4.170 16 C 0.116 3.884 17 O -0.292 6.292 18 C -0.107 4.107 19 C -0.170 4.170 20 O -0.344 6.344 21 Si 0.577 3.423 22 C -0.072 4.072 23 C -0.163 4.163 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.236 0.764 32 H 0.151 0.849 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.250 0.750 37 H 0.090 0.910 38 H 0.229 0.771 39 H -0.177 1.177 40 H -0.169 1.169 41 H 0.157 0.843 42 H 0.117 0.883 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.021 3.183 1.598 3.705 hybrid contribution -1.613 1.840 0.661 2.534 sum -2.634 5.023 2.259 6.105 Atomic orbital electron populations 1.23373 0.94114 1.06660 1.04925 1.87007 1.07578 1.10271 1.97623 1.24671 1.01047 0.94390 1.01143 0.87580 1.22764 0.93402 0.97879 0.99849 1.22770 0.95694 0.99012 0.96730 0.88075 1.21415 0.98254 0.88418 0.91250 1.45861 1.27539 1.30554 1.33693 1.18122 0.82654 0.84376 0.80118 1.90821 1.28868 1.50949 1.70387 1.19785 0.97520 0.97619 0.99152 1.21086 0.95870 0.93282 0.98242 1.20209 0.98424 0.97949 0.95164 1.20735 0.94161 0.98724 1.03396 1.18275 0.91528 0.89647 0.88908 1.84785 1.77849 1.18281 1.48302 1.19671 0.96174 0.97142 0.97707 1.24459 1.03102 1.04318 0.85154 1.86539 1.46670 1.86896 1.14341 0.95462 0.79896 0.80495 0.86466 1.20990 0.98372 0.94746 0.93087 1.23427 0.98055 0.99159 0.95692 0.90487 0.90427 0.88037 0.89820 0.88548 0.90766 0.90659 0.76435 0.84900 0.90790 0.90279 0.91014 0.74964 0.90955 0.77052 1.17690 1.16917 0.84350 0.88347 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.13 10.76 101.05 1.09 1.21 16 2 S -0.25 -0.28 22.17 -107.50 -2.38 -2.66 16 3 C -0.08 0.11 4.28 -25.92 -0.11 -0.01 16 4 H 0.11 -0.21 8.14 -51.93 -0.42 -0.63 16 5 C -0.10 0.17 7.23 -25.92 -0.19 -0.02 16 6 C -0.12 0.31 3.75 -89.80 -0.34 -0.03 16 7 H 0.10 -0.38 8.14 -51.93 -0.42 -0.80 16 8 C 0.13 -0.04 5.51 -4.04 -0.02 -0.06 16 9 N -0.72 -0.01 5.51 -61.32 -0.34 -0.34 16 10 C 0.56 2.09 7.76 -12.44 -0.10 1.99 16 11 O -0.53 -4.14 16.34 5.29 0.09 -4.05 16 12 C -0.14 -0.39 5.88 -104.96 -0.62 -1.01 16 13 C -0.07 -0.01 9.18 -39.22 -0.36 -0.37 16 14 C -0.12 -0.05 5.89 -104.54 -0.62 -0.67 16 15 C -0.11 0.21 9.78 36.00 0.35 0.56 16 16 C 0.16 0.28 6.66 -39.02 -0.26 0.02 16 17 O -0.48 -0.17 11.84 -18.83 -0.22 -0.39 16 18 C -0.11 -0.30 5.30 -104.54 -0.55 -0.85 16 19 C -0.06 -0.04 2.36 36.00 0.09 0.04 16 20 O -0.54 -0.79 12.86 -35.23 -0.45 -1.24 16 21 Si 0.68 0.17 30.18 -169.99 -5.13 -4.96 16 22 C -0.05 -0.22 8.20 -39.22 -0.32 -0.54 16 23 C -0.12 0.25 7.22 -25.92 -0.19 0.06 16 24 H 0.08 -0.13 8.14 -51.92 -0.42 -0.56 16 25 H 0.08 -0.13 8.14 -51.92 -0.42 -0.55 16 26 H 0.10 -0.14 8.14 -51.92 -0.42 -0.56 16 27 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 28 H 0.10 -0.07 8.06 -51.93 -0.42 -0.49 16 29 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 30 H 0.08 0.08 7.85 -51.93 -0.41 -0.33 16 31 H 0.40 -1.15 6.49 -40.82 -0.27 -1.41 16 32 H 0.13 -0.42 6.39 -52.49 -0.34 -0.76 16 33 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 34 H 0.08 -0.08 7.52 -51.93 -0.39 -0.47 16 35 H 0.07 -0.20 8.08 -51.93 -0.42 -0.62 16 36 H 0.39 -1.73 9.06 45.56 0.41 -1.32 16 37 H 0.07 -0.12 7.82 -51.93 -0.41 -0.52 16 38 H 0.38 -1.42 8.74 45.56 0.40 -1.02 16 39 H -0.25 -0.70 7.11 56.52 0.40 -0.30 16 40 H -0.24 -1.00 6.75 56.52 0.38 -0.62 16 41 H 0.14 0.74 4.47 -52.49 -0.23 0.51 16 42 H 0.10 -0.07 7.86 -51.93 -0.41 -0.48 16 43 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 LS Contribution 368.16 15.07 5.55 5.55 Total: 0.00 -10.44 368.16 -10.53 -20.98 By element: Atomic # 1 Polarization: -7.71 SS G_CDS: -5.50 Total: -13.21 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.14 Total: 0.33 kcal Atomic # 7 Polarization: -0.01 SS G_CDS: -0.34 Total: -0.34 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.59 Total: -5.68 kcal Atomic # 14 Polarization: 0.17 SS G_CDS: -5.13 Total: -4.96 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.38 Total: -2.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -10.44 -10.53 -20.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_13287732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.945 kcal (2) G-P(sol) polarization free energy of solvation -10.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds