Wall clock time and date at job start Tue Mar 9 2021 12:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81400 * 102.99812 * 2 1 4 4 H 1.09001 * 112.85288 * 43.80574 * 3 2 1 5 5 C 1.53789 * 113.61104 * 175.00041 * 3 2 1 6 6 C 1.53786 * 87.07740 * 140.06621 * 5 3 2 7 7 H 1.08995 * 113.61416 * 89.20323 * 6 5 3 8 8 C 1.53002 * 113.60816 * 220.01795 * 6 5 3 9 9 N 1.46502 * 109.46800 * 185.00189 * 8 6 5 10 10 C 1.34777 * 119.99969 * 180.02562 * 9 8 6 11 11 O 1.21591 * 120.00299 * 359.97438 * 10 9 8 12 12 C 1.47532 * 120.00006 * 179.97438 * 10 9 8 13 13 C 1.40141 * 120.19150 * 180.02562 * 12 10 9 14 14 O 1.35649 * 120.15170 * 359.97256 * 13 12 10 15 15 C 1.38714 * 119.69862 * 179.68930 * 13 12 10 16 16 C 1.38056 * 120.08510 * 0.55436 * 15 13 12 17 17 C 1.50699 * 119.80628 * 179.73088 * 16 15 13 18 18 O 1.42901 * 109.46830 * 299.73140 * 17 16 15 19 19 Si 1.86298 * 109.46950 * 179.73577 * 17 16 15 20 20 C 1.38552 * 120.38730 * 359.46613 * 16 15 13 21 21 C 1.37790 * 120.29937 * 0.24137 * 20 16 15 22 22 C 1.53780 * 113.68808 * 272.53151 * 3 2 1 23 23 H 1.08998 * 109.47440 * 60.00258 * 1 2 3 24 24 H 1.09002 * 109.47444 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47466 * 300.00074 * 1 2 3 26 26 H 1.08997 * 113.61856 * 25.51629 * 5 3 2 27 27 H 1.08996 * 113.68598 * 254.61848 * 5 3 2 28 28 H 1.08997 * 109.47055 * 65.00049 * 8 6 5 29 29 H 1.08998 * 109.47305 * 304.99990 * 8 6 5 30 30 H 0.96996 * 120.00211 * 359.97438 * 9 8 6 31 31 H 0.96700 * 113.99833 * 90.00430 * 14 13 12 32 32 H 1.07999 * 119.95561 * 180.31561 * 15 13 12 33 33 H 1.08991 * 109.47351 * 59.73287 * 17 16 15 34 34 H 0.96708 * 114.00246 * 299.99864 * 18 17 16 35 35 H 1.48506 * 109.99834 * 180.02562 * 19 17 16 36 36 H 1.48502 * 110.00011 * 301.31529 * 19 17 16 37 37 H 1.07998 * 119.85054 * 180.27287 * 20 16 15 38 38 H 1.08004 * 120.03989 * 180.02562 * 21 20 16 39 39 H 1.09001 * 113.61322 * 105.46535 * 22 3 2 40 40 H 1.08991 * 113.61812 * 334.55837 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7283 2.0520 0.1228 6 6 3.5201 3.1753 -0.9067 7 1 3.2653 4.1359 -0.4592 8 6 4.6472 3.2796 -1.9361 9 7 4.4191 4.4455 -2.7934 10 6 5.2901 4.7376 -3.7795 11 8 6.2654 4.0337 -3.9575 12 6 5.0601 5.9114 -4.6432 13 6 5.9629 6.2185 -5.6701 14 8 7.0533 5.4379 -5.8748 15 6 5.7333 7.3209 -6.4802 16 6 4.6261 8.1176 -6.2671 17 6 4.3860 9.3172 -7.1471 18 8 5.4866 10.2212 -7.0307 19 14 2.8197 10.1741 -6.6149 20 6 3.7315 7.8176 -5.2526 21 6 3.9409 6.7230 -4.4423 22 6 2.3003 2.3835 -1.4069 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 4.3572 1.2388 -0.2394 27 1 4.0271 2.4119 1.1073 28 1 4.6656 2.3773 -2.5473 29 1 5.6013 3.3888 -1.4206 30 1 3.6409 5.0069 -2.6517 31 1 6.9048 4.7092 -6.4928 32 1 6.4236 7.5584 -7.2761 33 1 4.2892 8.9941 -8.1835 34 1 5.6322 10.5503 -6.1331 35 1 2.5713 11.3587 -7.4754 36 1 1.6726 9.2350 -6.7010 37 1 2.8659 8.4443 -5.0964 38 1 3.2406 6.4928 -3.6529 39 1 1.4450 3.0113 -1.6569 40 1 2.5388 1.6610 -2.1872 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_13422076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:20 Heat of formation + Delta-G solvation = -53.412949 kcal Electronic energy + Delta-G solvation = -22744.992675 eV Core-core repulsion = 19232.727999 eV Total energy + Delta-G solvation = -3512.264676 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.64569 -40.45720 -39.49636 -38.39846 -37.17674 -35.45864 -32.95779 -31.14380 -30.06566 -29.50283 -27.33960 -26.88202 -24.43258 -23.95927 -23.12094 -21.65664 -20.74759 -19.50131 -18.74678 -18.24758 -17.70044 -17.11349 -16.92368 -16.48092 -16.33485 -16.26924 -16.04042 -15.82100 -15.31427 -15.20920 -14.89007 -14.78491 -14.35695 -14.28202 -14.16701 -13.85596 -13.64003 -13.56841 -13.34763 -12.94786 -12.83949 -12.33573 -12.18671 -12.04083 -11.89011 -11.68046 -11.51797 -10.89969 -10.79584 -10.57505 -10.19897 -10.05093 -9.79855 -8.68135 -5.15930 -0.42886 0.07369 0.69289 1.14055 1.49837 1.54669 1.76503 1.86056 2.05581 2.56586 3.08791 3.24313 3.28112 3.32573 3.41338 3.47135 3.58653 3.62959 3.70851 3.94571 4.03570 4.14044 4.16734 4.17692 4.19626 4.30938 4.50193 4.52248 4.58006 4.62399 4.65889 4.70414 4.73147 4.81371 4.90592 4.92942 5.09953 5.16656 5.18892 5.38528 5.50129 6.42664 6.43896 6.69489 7.21449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.254 6.254 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.100 4.100 6 C -0.121 4.121 7 H 0.101 0.899 8 C 0.132 3.868 9 N -0.728 5.728 10 C 0.557 3.443 11 O -0.517 6.517 12 C -0.164 4.164 13 C 0.173 3.827 14 O -0.476 6.476 15 C -0.129 4.129 16 C -0.077 4.077 17 C -0.074 4.074 18 O -0.537 6.537 19 Si 0.693 3.307 20 C -0.137 4.137 21 C -0.065 4.065 22 C -0.123 4.123 23 H 0.077 0.923 24 H 0.101 0.899 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.399 0.601 31 H 0.398 0.602 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.381 0.619 35 H -0.253 1.253 36 H -0.256 1.256 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.073 0.927 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 2.837 2.596 6.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.025 6.025 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.139 4.139 6 C -0.142 4.142 7 H 0.119 0.881 8 C 0.008 3.992 9 N -0.381 5.381 10 C 0.344 3.656 11 O -0.393 6.393 12 C -0.168 4.168 13 C 0.126 3.874 14 O -0.287 6.287 15 C -0.148 4.148 16 C -0.077 4.077 17 C -0.185 4.185 18 O -0.342 6.342 19 Si 0.595 3.405 20 C -0.154 4.154 21 C -0.084 4.084 22 C -0.163 4.163 23 H 0.096 0.904 24 H 0.119 0.881 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.234 0.766 31 H 0.256 0.744 32 H 0.159 0.841 33 H 0.135 0.865 34 H 0.229 0.771 35 H -0.178 1.178 36 H -0.181 1.181 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.091 0.909 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.862 1.888 2.018 5.593 hybrid contribution -1.274 0.475 -0.490 1.445 sum -6.136 2.363 1.528 6.751 Atomic orbital electron populations 1.23371 0.94151 1.06642 1.04915 1.87011 1.07535 1.10337 1.97622 1.24676 1.01083 0.94326 1.01175 0.87599 1.22764 0.93342 0.97902 0.99923 1.22767 0.95690 0.98967 0.96738 0.88061 1.21374 0.98188 0.88376 0.91244 1.45890 1.27735 1.30522 1.33941 1.18040 0.82748 0.84440 0.80364 1.90847 1.28071 1.50479 1.69913 1.20425 0.97336 0.98457 1.00556 1.18520 0.85254 0.91414 0.92175 1.84764 1.31129 1.44458 1.68359 1.21355 0.97992 0.95056 1.00353 1.20457 0.94661 0.96660 0.95957 1.25182 1.00859 0.90400 1.02053 1.86534 1.50720 1.62334 1.34623 0.94655 0.75033 0.81071 0.89787 1.20946 0.99872 0.98501 0.96113 1.21135 0.95359 0.93600 0.98288 1.23419 0.98088 0.99125 0.95667 0.90442 0.88063 0.90491 0.88576 0.89826 0.90829 0.90845 0.76615 0.74355 0.84149 0.86458 0.77141 1.17767 1.18091 0.84733 0.84885 0.90855 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.17 10.76 101.05 1.09 1.26 16 2 S -0.25 -0.18 22.18 -107.50 -2.38 -2.56 16 3 C -0.08 0.14 4.27 -25.91 -0.11 0.03 16 4 H 0.11 -0.25 8.14 -51.93 -0.42 -0.68 16 5 C -0.10 0.21 7.23 -25.91 -0.19 0.02 16 6 C -0.12 0.38 3.76 -89.80 -0.34 0.04 16 7 H 0.10 -0.44 8.14 -51.93 -0.42 -0.86 16 8 C 0.13 -0.14 5.51 -4.04 -0.02 -0.16 16 9 N -0.73 0.78 5.51 -61.35 -0.34 0.44 16 10 C 0.56 1.26 7.76 -12.47 -0.10 1.17 16 11 O -0.52 -3.19 15.16 -16.59 -0.25 -3.44 16 12 C -0.16 -0.14 5.89 -104.85 -0.62 -0.76 16 13 C 0.17 0.30 6.72 -38.69 -0.26 0.04 16 14 O -0.48 -1.35 11.58 -40.53 -0.47 -1.82 16 15 C -0.13 -0.06 9.53 -39.47 -0.38 -0.44 16 16 C -0.08 0.08 5.39 -104.57 -0.56 -0.49 16 17 C -0.07 0.11 2.81 36.01 0.10 0.21 16 18 O -0.54 0.31 12.77 -35.23 -0.45 -0.14 16 19 Si 0.69 -1.71 29.77 -169.99 -5.06 -6.77 16 20 C -0.14 0.30 8.64 -39.63 -0.34 -0.04 16 21 C -0.07 0.13 9.53 -39.20 -0.37 -0.24 16 22 C -0.12 0.33 7.22 -25.92 -0.19 0.14 16 23 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 24 H 0.10 -0.18 8.14 -51.92 -0.42 -0.60 16 25 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 26 H 0.10 -0.11 8.06 -51.93 -0.42 -0.53 16 27 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 28 H 0.07 0.01 7.84 -51.93 -0.41 -0.39 16 29 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.40 -1.56 6.50 -40.82 -0.27 -1.83 16 31 H 0.40 -0.33 9.06 45.56 0.41 0.08 16 32 H 0.14 0.05 8.06 -52.49 -0.42 -0.38 16 33 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 34 H 0.38 -1.67 8.70 45.56 0.40 -1.27 16 35 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 36 H -0.26 0.13 7.11 56.52 0.40 0.53 16 37 H 0.14 -0.59 4.85 -52.49 -0.25 -0.85 16 38 H 0.13 -0.68 6.40 -52.48 -0.34 -1.01 16 39 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 40 H 0.10 -0.14 7.86 -51.93 -0.41 -0.55 16 LS Contribution 346.63 15.07 5.22 5.22 Total: 0.00 -9.21 346.63 -10.71 -19.92 By element: Atomic # 1 Polarization: -6.94 SS G_CDS: -4.70 Total: -11.64 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.29 Total: 0.79 kcal Atomic # 7 Polarization: 0.78 SS G_CDS: -0.34 Total: 0.44 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -1.17 Total: -5.40 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: -5.06 Total: -6.77 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.38 Total: -2.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -9.21 -10.71 -19.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_13422076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.495 kcal (2) G-P(sol) polarization free energy of solvation -9.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds