Wall clock time and date at job start Tue Mar 9 2021 12:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81400 * 102.99812 * 2 1 4 4 H 1.09001 * 112.85288 * 43.80574 * 3 2 1 5 5 C 1.53789 * 113.61104 * 175.00041 * 3 2 1 6 6 C 1.53786 * 87.07740 * 140.06621 * 5 3 2 7 7 H 1.08995 * 113.61416 * 89.20323 * 6 5 3 8 8 C 1.53002 * 113.60816 * 220.01795 * 6 5 3 9 9 N 1.46502 * 109.46800 * 185.00189 * 8 6 5 10 10 C 1.34777 * 119.99969 * 180.02562 * 9 8 6 11 11 O 1.21591 * 120.00299 * 359.97438 * 10 9 8 12 12 C 1.47532 * 120.00006 * 179.97438 * 10 9 8 13 13 C 1.40141 * 120.19150 * 180.02562 * 12 10 9 14 14 O 1.35649 * 120.15170 * 359.97256 * 13 12 10 15 15 C 1.38714 * 119.69862 * 179.68930 * 13 12 10 16 16 C 1.38056 * 120.08510 * 0.55436 * 15 13 12 17 17 C 1.50699 * 119.80628 * 179.73088 * 16 15 13 18 18 O 1.42901 * 109.46830 * 299.73140 * 17 16 15 19 19 Si 1.86298 * 109.46950 * 179.73577 * 17 16 15 20 20 C 1.38552 * 120.38730 * 359.46613 * 16 15 13 21 21 C 1.37790 * 120.29937 * 0.24137 * 20 16 15 22 22 C 1.53780 * 113.68808 * 272.53151 * 3 2 1 23 23 H 1.08998 * 109.47440 * 60.00258 * 1 2 3 24 24 H 1.09002 * 109.47444 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47466 * 300.00074 * 1 2 3 26 26 H 1.08997 * 113.61856 * 25.51629 * 5 3 2 27 27 H 1.08996 * 113.68598 * 254.61848 * 5 3 2 28 28 H 1.08997 * 109.47055 * 65.00049 * 8 6 5 29 29 H 1.08998 * 109.47305 * 304.99990 * 8 6 5 30 30 H 0.96996 * 120.00211 * 359.97438 * 9 8 6 31 31 H 0.96700 * 113.99833 * 90.00430 * 14 13 12 32 32 H 1.07999 * 119.95561 * 180.31561 * 15 13 12 33 33 H 1.08991 * 109.47351 * 59.73287 * 17 16 15 34 34 H 0.96708 * 114.00246 * 299.99864 * 18 17 16 35 35 H 1.48506 * 109.99834 * 180.02562 * 19 17 16 36 36 H 1.48502 * 110.00011 * 301.31529 * 19 17 16 37 37 H 1.07998 * 119.85054 * 180.27287 * 20 16 15 38 38 H 1.08004 * 120.03989 * 180.02562 * 21 20 16 39 39 H 1.09001 * 113.61322 * 105.46535 * 22 3 2 40 40 H 1.08991 * 113.61812 * 334.55837 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7283 2.0520 0.1228 6 6 3.5201 3.1753 -0.9067 7 1 3.2653 4.1359 -0.4592 8 6 4.6472 3.2796 -1.9361 9 7 4.4191 4.4455 -2.7934 10 6 5.2901 4.7376 -3.7795 11 8 6.2654 4.0337 -3.9575 12 6 5.0601 5.9114 -4.6432 13 6 5.9629 6.2185 -5.6701 14 8 7.0533 5.4379 -5.8748 15 6 5.7333 7.3209 -6.4802 16 6 4.6261 8.1176 -6.2671 17 6 4.3860 9.3172 -7.1471 18 8 5.4866 10.2212 -7.0307 19 14 2.8197 10.1741 -6.6149 20 6 3.7315 7.8176 -5.2526 21 6 3.9409 6.7230 -4.4423 22 6 2.3003 2.3835 -1.4069 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 4.3572 1.2388 -0.2394 27 1 4.0271 2.4119 1.1073 28 1 4.6656 2.3773 -2.5473 29 1 5.6013 3.3888 -1.4206 30 1 3.6409 5.0069 -2.6517 31 1 6.9048 4.7092 -6.4928 32 1 6.4236 7.5584 -7.2761 33 1 4.2892 8.9941 -8.1835 34 1 5.6322 10.5503 -6.1331 35 1 2.5713 11.3587 -7.4754 36 1 1.6726 9.2350 -6.7010 37 1 2.8659 8.4443 -5.0964 38 1 3.2406 6.4928 -3.6529 39 1 1.4450 3.0113 -1.6569 40 1 2.5388 1.6610 -2.1872 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_13422076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:20 Heat of formation + Delta-G solvation = -54.231143 kcal Electronic energy + Delta-G solvation = -22745.028154 eV Core-core repulsion = 19232.727999 eV Total energy + Delta-G solvation = -3512.300156 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.66343 -40.36955 -39.49058 -38.42320 -37.14214 -35.53971 -32.91013 -31.10735 -29.95072 -29.43127 -27.26489 -26.70001 -24.34996 -23.87683 -23.10663 -21.67998 -20.61027 -19.49147 -18.73757 -18.20269 -17.66819 -17.11857 -16.81708 -16.47096 -16.32573 -16.19938 -16.02125 -15.78692 -15.26082 -15.15458 -14.77313 -14.73977 -14.36062 -14.21586 -14.03156 -13.81365 -13.49381 -13.43962 -13.27905 -12.87627 -12.77314 -12.29804 -12.17866 -11.89073 -11.76945 -11.65975 -11.34504 -10.95281 -10.76684 -10.51653 -10.24344 -10.00091 -9.75663 -8.71027 -4.96890 -0.40929 0.15218 0.78600 1.29766 1.64654 1.65424 1.73370 2.00655 2.06542 2.57749 3.13321 3.37864 3.43803 3.48231 3.55661 3.63910 3.72153 3.80297 3.81842 4.09487 4.18009 4.28162 4.31115 4.31951 4.35880 4.40162 4.58826 4.63563 4.75390 4.76727 4.77254 4.83923 4.86452 4.97776 5.03336 5.05177 5.15550 5.24812 5.30613 5.46822 5.60403 6.48239 6.69925 6.73725 7.17472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.323 6.323 3 C -0.071 4.071 4 H 0.120 0.880 5 C -0.105 4.105 6 C -0.103 4.103 7 H 0.127 0.873 8 C 0.133 3.867 9 N -0.709 5.709 10 C 0.552 3.448 11 O -0.568 6.568 12 C -0.179 4.179 13 C 0.150 3.850 14 O -0.499 6.499 15 C -0.141 4.141 16 C -0.073 4.073 17 C -0.087 4.087 18 O -0.557 6.557 19 Si 0.791 3.209 20 C -0.131 4.131 21 C -0.051 4.051 22 C -0.118 4.118 23 H 0.086 0.914 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.416 0.584 31 H 0.406 0.594 32 H 0.132 0.868 33 H 0.109 0.891 34 H 0.397 0.603 35 H -0.305 1.305 36 H -0.272 1.272 37 H 0.165 0.835 38 H 0.171 0.829 39 H 0.092 0.908 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 4.426 3.803 9.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.095 6.095 3 C -0.200 4.200 4 H 0.138 0.862 5 C -0.145 4.145 6 C -0.123 4.123 7 H 0.145 0.855 8 C 0.010 3.990 9 N -0.362 5.362 10 C 0.340 3.660 11 O -0.448 6.448 12 C -0.183 4.183 13 C 0.104 3.896 14 O -0.312 6.312 15 C -0.160 4.160 16 C -0.074 4.074 17 C -0.196 4.196 18 O -0.365 6.365 19 Si 0.696 3.304 20 C -0.148 4.148 21 C -0.070 4.070 22 C -0.158 4.158 23 H 0.105 0.895 24 H 0.119 0.881 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.254 0.746 31 H 0.266 0.734 32 H 0.150 0.850 33 H 0.127 0.873 34 H 0.247 0.753 35 H -0.233 1.233 36 H -0.199 1.199 37 H 0.182 0.818 38 H 0.189 0.811 39 H 0.111 0.889 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.202 3.474 3.258 8.634 hybrid contribution -0.553 0.015 -0.917 1.071 sum -7.755 3.489 2.341 8.820 Atomic orbital electron populations 1.23361 0.91629 1.06984 1.05778 1.87266 1.10534 1.13900 1.97794 1.24747 1.01145 0.91946 1.02133 0.86159 1.22794 0.93139 0.97905 1.00629 1.22689 0.94381 0.99683 0.95524 0.85501 1.21319 0.98641 0.87726 0.91355 1.45739 1.27501 1.30310 1.32668 1.18357 0.82421 0.84402 0.80782 1.90819 1.30310 1.52231 1.71435 1.20446 0.98552 0.98835 1.00470 1.18789 0.85625 0.91913 0.93285 1.84718 1.32412 1.45132 1.68927 1.21329 0.98836 0.95364 1.00436 1.20584 0.94258 0.96285 0.96262 1.25463 1.01771 0.90498 1.01839 1.86498 1.51185 1.62500 1.36289 0.93584 0.72140 0.76776 0.87944 1.21252 1.00085 0.98498 0.95005 1.21512 0.94421 0.92425 0.98616 1.23356 0.98833 0.98884 0.94698 0.89542 0.88067 0.89552 0.90209 0.89025 0.92546 0.92181 0.74563 0.73437 0.85013 0.87309 0.75309 1.23320 1.19866 0.81834 0.81132 0.88911 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.37 10.76 113.37 1.22 1.59 16 2 S -0.32 -0.64 22.18 -56.49 -1.25 -1.89 16 3 C -0.07 0.31 4.27 31.12 0.13 0.44 16 4 H 0.12 -0.83 8.14 -2.39 -0.02 -0.85 16 5 C -0.11 0.46 7.23 31.13 0.23 0.69 16 6 C -0.10 0.78 3.76 -10.26 -0.04 0.74 16 7 H 0.13 -1.53 8.14 -2.39 -0.02 -1.55 16 8 C 0.13 -0.25 5.51 86.38 0.48 0.23 16 9 N -0.71 2.07 5.51 -466.27 -2.57 -0.50 16 10 C 0.55 2.87 7.76 86.69 0.67 3.54 16 11 O -0.57 -8.34 15.16 16.92 0.26 -8.08 16 12 C -0.18 -0.31 5.89 -20.01 -0.12 -0.43 16 13 C 0.15 0.75 6.72 22.85 0.15 0.91 16 14 O -0.50 -4.22 11.58 -68.72 -0.80 -5.02 16 15 C -0.14 -0.29 9.53 22.34 0.21 -0.08 16 16 C -0.07 0.19 5.39 -19.83 -0.11 0.08 16 17 C -0.09 0.28 2.81 71.24 0.20 0.48 16 18 O -0.56 0.67 12.77 -148.98 -1.90 -1.23 16 19 Si 0.79 -5.10 29.77 68.60 2.04 -3.06 16 20 C -0.13 0.90 8.64 22.24 0.19 1.09 16 21 C -0.05 0.33 9.53 22.52 0.21 0.54 16 22 C -0.12 0.77 7.22 31.12 0.22 1.00 16 23 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 24 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H 0.08 -0.07 8.06 -2.39 -0.02 -0.09 16 27 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 28 H 0.06 0.11 7.84 -2.39 -0.02 0.09 16 29 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.42 -4.37 6.50 -92.71 -0.60 -4.98 16 31 H 0.41 0.69 9.06 -74.06 -0.67 0.02 16 32 H 0.13 0.38 8.06 -2.91 -0.02 0.36 16 33 H 0.11 -0.20 7.96 -2.39 -0.02 -0.22 16 34 H 0.40 -3.72 8.70 -74.05 -0.64 -4.36 16 35 H -0.30 -0.72 7.11 99.48 0.71 -0.01 16 36 H -0.27 0.96 7.11 99.48 0.71 1.67 16 37 H 0.16 -2.08 4.85 -2.91 -0.01 -2.10 16 38 H 0.17 -2.47 6.40 -2.91 -0.02 -2.49 16 39 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 40 H 0.08 -0.22 7.86 -2.39 -0.02 -0.24 16 Total: 0.00 -25.10 346.63 -1.35 -26.45 By element: Atomic # 1 Polarization: -16.71 SS G_CDS: -0.79 Total: -17.51 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 3.66 Total: 10.83 kcal Atomic # 7 Polarization: 2.07 SS G_CDS: -2.57 Total: -0.50 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -2.44 Total: -14.33 kcal Atomic # 14 Polarization: -5.10 SS G_CDS: 2.04 Total: -3.06 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -1.25 Total: -1.89 kcal Total: -25.10 -1.35 -26.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_13422076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.779 kcal (2) G-P(sol) polarization free energy of solvation -25.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds