Wall clock time and date at job start Tue Mar 9 2021 12:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81405 * 103.00083 * 2 1 4 4 H 1.08998 * 112.84909 * 43.80542 * 3 2 1 5 5 C 1.53783 * 113.61097 * 174.99753 * 3 2 1 6 6 C 1.53779 * 87.07658 * 139.98088 * 5 3 2 7 7 H 1.09005 * 113.61642 * 89.20117 * 6 5 3 8 8 C 1.53004 * 113.61572 * 220.01741 * 6 5 3 9 9 N 1.46504 * 109.47285 * 183.47170 * 8 6 5 10 10 C 1.34770 * 119.99723 * 180.02562 * 9 8 6 11 11 O 1.21613 * 120.00662 * 359.97438 * 10 9 8 12 12 C 1.47385 * 119.99488 * 180.02562 * 10 9 8 13 13 C 1.36411 * 127.19467 * 359.97438 * 12 10 9 14 14 O 1.33651 * 108.39754 * 180.02562 * 13 12 10 15 15 C 1.34214 * 110.90899 * 359.97438 * 14 13 12 16 16 C 1.50699 * 125.43765 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47152 * 120.03099 * 16 15 14 18 18 Si 1.86293 * 109.47431 * 0.02991 * 16 15 14 19 19 C 1.34183 * 109.12463 * 0.23207 * 15 14 13 20 20 C 1.53775 * 87.17518 * 334.61063 * 6 5 3 21 21 H 1.08995 * 109.47162 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46943 * 300.00240 * 1 2 3 23 23 H 1.09001 * 109.46890 * 59.99945 * 1 2 3 24 24 H 1.08999 * 113.61788 * 25.43785 * 5 3 2 25 25 H 1.08997 * 113.68961 * 254.54066 * 5 3 2 26 26 H 1.09000 * 109.46799 * 63.46991 * 8 6 5 27 27 H 1.09002 * 109.47051 * 303.47583 * 8 6 5 28 28 H 0.97002 * 119.99874 * 0.02562 * 9 8 6 29 29 H 1.07996 * 125.80225 * 0.05472 * 13 12 10 30 30 H 1.09008 * 109.47393 * 240.02494 * 16 15 14 31 31 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 32 32 H 1.48501 * 109.99918 * 298.67862 * 18 16 15 33 33 H 1.48506 * 109.99973 * 59.99460 * 18 16 15 34 34 H 1.07997 * 127.02335 * 179.73313 * 19 15 14 35 35 H 1.09001 * 113.61971 * 139.94394 * 20 6 5 36 36 H 1.09001 * 113.61362 * 270.83670 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6110 2.3430 0.6953 5 6 3.7284 2.0519 0.1229 6 6 3.5207 3.1737 -0.9083 7 1 3.2659 4.1351 -0.4623 8 6 4.6480 3.2765 -1.9377 9 7 4.4012 4.4198 -2.8198 10 6 5.2691 4.7064 -3.8102 11 8 6.2574 4.0164 -3.9714 12 6 5.0210 5.8570 -4.6972 13 6 3.9683 6.7233 -4.6493 14 8 4.1172 7.6225 -5.6268 15 6 5.2369 7.3866 -6.3282 16 6 5.7206 8.1994 -7.5014 17 8 7.0094 8.7416 -7.2062 18 14 4.5233 9.5880 -7.8308 19 6 5.8539 6.3080 -5.8217 20 6 2.2998 2.3838 -1.4086 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 4.3573 1.2381 -0.2381 25 1 4.0270 2.4132 1.1069 26 1 4.6840 2.3619 -2.5296 27 1 5.5989 3.4135 -1.4226 28 1 3.6131 4.9705 -2.6910 29 1 3.1534 6.6888 -3.9415 30 1 5.7882 7.5612 -8.3825 31 1 7.3831 9.2781 -7.9187 32 1 3.1869 9.0366 -8.1704 33 1 4.4222 10.4655 -6.6369 34 1 6.7747 5.8629 -6.1685 35 1 1.4454 3.0127 -1.6588 36 1 2.5374 1.6609 -2.1890 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_13456056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:32 Heat of formation + Delta-G solvation = -23.338463 kcal Electronic energy + Delta-G solvation = -19436.346216 eV Core-core repulsion = 16209.149427 eV Total energy + Delta-G solvation = -3227.196789 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.86234 -40.89088 -39.69322 -37.90454 -35.70412 -34.11172 -32.15492 -29.97178 -29.42365 -26.77074 -26.64235 -25.25429 -23.57621 -22.37301 -21.31238 -20.34459 -19.09944 -18.65670 -17.77184 -17.41771 -17.29465 -16.85737 -16.68452 -16.16458 -15.95437 -15.76445 -15.23341 -14.82026 -14.78224 -14.30351 -14.25164 -14.20773 -14.08058 -13.77789 -13.52858 -13.48747 -12.85919 -12.71500 -12.16461 -11.95713 -11.84002 -11.39786 -11.28703 -11.08595 -10.81142 -10.52429 -10.26410 -9.85220 -8.73694 -5.03041 0.12359 0.70612 0.75482 1.18885 1.50841 1.62343 1.70010 1.96523 2.01715 2.15186 3.26690 3.35961 3.39667 3.44982 3.60369 3.68728 3.75649 3.85318 4.10482 4.25042 4.28533 4.29440 4.30654 4.35268 4.42630 4.58304 4.71491 4.72958 4.75788 4.80526 4.83899 4.93675 5.00386 5.03775 5.22173 5.40378 5.70961 6.38120 6.82290 7.05471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.321 6.321 3 C -0.072 4.072 4 H 0.120 0.880 5 C -0.104 4.104 6 C -0.103 4.103 7 H 0.126 0.874 8 C 0.133 3.867 9 N -0.706 5.706 10 C 0.586 3.414 11 O -0.585 6.585 12 C -0.263 4.263 13 C 0.057 3.943 14 O -0.184 6.184 15 C -0.029 4.029 16 C -0.049 4.049 17 O -0.564 6.564 18 Si 0.819 3.181 19 C -0.146 4.146 20 C -0.119 4.119 21 H 0.101 0.899 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.417 0.583 29 H 0.264 0.736 30 H 0.119 0.881 31 H 0.414 0.586 32 H -0.288 1.288 33 H -0.302 1.302 34 H 0.152 0.848 35 H 0.092 0.908 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.644 5.619 -1.647 8.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.093 6.093 3 C -0.200 4.200 4 H 0.138 0.862 5 C -0.144 4.144 6 C -0.123 4.123 7 H 0.144 0.856 8 C 0.009 3.991 9 N -0.358 5.358 10 C 0.374 3.626 11 O -0.466 6.466 12 C -0.268 4.268 13 C -0.013 4.013 14 O -0.081 6.081 15 C -0.076 4.076 16 C -0.157 4.157 17 O -0.376 6.376 18 Si 0.723 3.277 19 C -0.166 4.166 20 C -0.158 4.158 21 H 0.120 0.880 22 H 0.104 0.896 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.254 0.746 29 H 0.279 0.721 30 H 0.136 0.864 31 H 0.267 0.733 32 H -0.215 1.215 33 H -0.230 1.230 34 H 0.169 0.831 35 H 0.111 0.889 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.309 4.496 -1.015 7.031 hybrid contribution -0.675 0.065 0.558 0.878 sum -5.984 4.561 -0.458 7.538 Atomic orbital electron populations 1.23367 0.91621 1.07027 1.05760 1.87260 1.10538 1.13732 1.97785 1.24767 1.01134 0.92060 1.02033 0.86188 1.22785 0.93175 0.97852 1.00567 1.22688 0.94350 0.99763 0.95525 0.85585 1.21369 0.98779 0.88098 0.90867 1.45622 1.26556 1.32159 1.31455 1.17440 0.82335 0.82785 0.80014 1.90793 1.30382 1.52623 1.72795 1.21535 1.00507 1.01858 1.02890 1.25336 0.99319 0.86627 0.90010 1.83728 1.39129 1.48033 1.37225 1.21706 0.88169 0.98883 0.98856 1.24154 0.93935 1.05149 0.92499 1.86413 1.31558 1.71791 1.47798 0.93956 0.74616 0.76350 0.82760 1.22600 1.00947 0.96775 0.96246 1.23389 0.98752 0.98924 0.94769 0.87987 0.89560 0.89573 0.90088 0.88955 0.92390 0.91925 0.74581 0.72051 0.86386 0.73298 1.21455 1.22973 0.83070 0.88931 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.30 10.76 113.37 1.22 1.52 16 2 S -0.32 -0.84 22.18 -56.49 -1.25 -2.09 16 3 C -0.07 0.25 4.28 31.18 0.13 0.38 16 4 H 0.12 -0.73 8.14 -2.39 -0.02 -0.75 16 5 C -0.10 0.38 7.23 31.12 0.23 0.60 16 6 C -0.10 0.68 3.75 -10.27 -0.04 0.64 16 7 H 0.13 -1.37 8.14 -2.38 -0.02 -1.39 16 8 C 0.13 -0.08 5.50 86.38 0.47 0.40 16 9 N -0.71 0.83 5.55 -466.40 -2.59 -1.76 16 10 C 0.59 4.75 7.81 86.65 0.68 5.43 16 11 O -0.58 -10.66 16.98 -4.07 -0.07 -10.73 16 12 C -0.26 -1.53 6.31 -18.99 -0.12 -1.65 16 13 C 0.06 -0.07 11.61 67.39 0.78 0.71 16 14 O -0.18 -0.75 8.89 4.49 0.04 -0.71 16 15 C -0.03 -0.16 6.24 24.76 0.15 -0.01 16 16 C -0.05 0.06 2.96 71.24 0.21 0.27 16 17 O -0.56 0.42 12.84 -148.98 -1.91 -1.50 16 18 Si 0.82 -2.91 32.08 68.60 2.20 -0.71 16 19 C -0.15 -1.28 10.88 23.65 0.26 -1.03 16 20 C -0.12 0.66 7.24 31.17 0.23 0.89 16 21 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 22 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 23 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H 0.08 -0.02 8.06 -2.39 -0.02 -0.03 16 25 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H 0.06 0.19 7.87 -2.39 -0.02 0.17 16 27 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.42 -3.90 7.44 -92.71 -0.69 -4.59 16 29 H 0.26 -3.52 7.47 -2.91 -0.02 -3.54 16 30 H 0.12 -0.74 7.96 -2.38 -0.02 -0.75 16 31 H 0.41 -5.18 8.74 -74.06 -0.65 -5.83 16 32 H -0.29 -0.60 7.11 99.48 0.71 0.10 16 33 H -0.30 -1.51 7.11 99.48 0.71 -0.81 16 34 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 36 H 0.08 -0.14 7.88 -2.39 -0.02 -0.16 16 Total: 0.00 -28.21 325.93 0.42 -27.79 By element: Atomic # 1 Polarization: -18.25 SS G_CDS: -0.20 Total: -18.45 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 4.20 Total: 8.16 kcal Atomic # 7 Polarization: 0.83 SS G_CDS: -2.59 Total: -1.76 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -1.94 Total: -12.93 kcal Atomic # 14 Polarization: -2.91 SS G_CDS: 2.20 Total: -0.71 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -1.25 Total: -2.09 kcal Total: -28.21 0.42 -27.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_13456056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.447 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds