Wall clock time and date at job start Tue Mar 9 2021 12:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81397 * 103.00143 * 2 1 4 4 H 1.09011 * 112.84572 * 316.19821 * 3 2 1 5 5 C 1.53777 * 113.61627 * 87.49864 * 3 2 1 6 6 C 1.53782 * 87.08253 * 139.98452 * 5 3 2 7 7 H 1.09002 * 113.61224 * 89.11632 * 6 5 3 8 8 C 1.52998 * 113.68910 * 220.01218 * 6 5 3 9 9 N 1.46499 * 109.47223 * 272.52826 * 8 6 5 10 10 C 1.34772 * 120.00372 * 180.02562 * 9 8 6 11 11 O 1.21694 * 119.99812 * 0.02562 * 10 9 8 12 12 C 1.46676 * 120.00147 * 180.02562 * 10 9 8 13 13 C 1.37879 * 126.23301 * 180.02562 * 12 10 9 14 14 C 1.50693 * 126.45660 * 359.92934 * 13 12 10 15 15 C 1.39839 * 107.08153 * 179.97438 * 13 12 10 16 16 C 1.35446 * 107.86792 * 0.02562 * 15 13 12 17 17 C 1.50702 * 125.56526 * 180.02562 * 16 15 13 18 18 O 1.42902 * 109.47085 * 64.99716 * 17 16 15 19 19 Si 1.86298 * 109.47218 * 184.99943 * 17 16 15 20 20 N 1.35538 * 108.87134 * 359.76709 * 16 15 13 21 21 C 1.53778 * 113.61839 * 185.00026 * 3 2 1 22 22 H 1.09002 * 109.47124 * 60.00087 * 1 2 3 23 23 H 1.09001 * 109.46975 * 300.00209 * 1 2 3 24 24 H 1.09004 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.09002 * 113.61654 * 254.53209 * 5 3 2 26 26 H 1.09004 * 113.61738 * 25.43475 * 5 3 2 27 27 H 1.08997 * 109.47639 * 32.53446 * 8 6 5 28 28 H 1.09003 * 109.47019 * 152.53484 * 8 6 5 29 29 H 0.97001 * 119.99765 * 0.02562 * 9 8 6 30 30 H 1.09006 * 109.47405 * 89.99922 * 14 13 12 31 31 H 1.08999 * 109.47537 * 210.00161 * 14 13 12 32 32 H 1.09007 * 109.47579 * 330.00181 * 14 13 12 33 33 H 1.07994 * 126.06123 * 179.97438 * 15 13 12 34 34 H 1.08997 * 109.46759 * 305.00155 * 17 16 15 35 35 H 0.96696 * 113.99884 * 180.02562 * 18 17 16 36 36 H 1.48496 * 109.99891 * 299.99724 * 19 17 16 37 37 H 1.48498 * 110.00009 * 61.31723 * 19 17 16 38 38 H 0.97001 * 125.67731 * 180.26322 * 20 16 15 39 39 H 1.09004 * 113.60724 * 334.56568 * 21 3 2 40 40 H 1.08991 * 113.61499 * 105.46693 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 -0.6953 5 6 2.3008 2.3816 1.4076 6 6 3.5206 3.1738 0.9083 7 1 3.2643 4.1348 0.4623 8 6 4.6489 3.2779 1.9365 9 7 4.4210 4.4426 2.7954 10 6 5.2935 4.7348 3.7801 11 8 6.2709 4.0314 3.9555 12 6 5.0650 5.9006 4.6404 13 6 5.8698 6.3167 5.6798 14 6 7.1441 5.6598 6.1439 15 6 5.2800 7.4625 6.2226 16 6 4.1502 7.7203 5.5214 17 6 3.2057 8.8677 5.7719 18 8 3.8750 10.1021 5.5069 19 14 1.7262 8.7103 4.6507 20 7 4.0107 6.7813 4.5541 21 6 3.7284 2.0520 -0.1228 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.4456 3.0090 1.6588 26 1 2.5394 1.6579 2.1871 27 1 4.6690 2.3749 2.5465 28 1 5.6022 3.3886 1.4197 29 1 3.6421 5.0035 2.6553 30 1 7.9900 6.0861 5.6047 31 1 7.2719 5.8295 7.2130 32 1 7.0923 4.5884 5.9498 33 1 5.6579 8.0390 7.0540 34 1 2.8778 8.8480 6.8112 35 1 3.3259 10.8854 5.6480 36 1 2.1601 8.7358 3.2308 37 1 1.0033 7.4454 4.9382 38 1 3.2875 6.7365 3.9091 39 1 4.3572 1.2381 0.2382 40 1 4.0256 2.4133 -1.1072 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:34 Heat of formation + Delta-G solvation = 1.838647 kcal Electronic energy + Delta-G solvation = -21539.808048 eV Core-core repulsion = 18255.884063 eV Total energy + Delta-G solvation = -3283.923985 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.59401 -40.68502 -39.59335 -37.78912 -35.69910 -33.60197 -31.77801 -30.07817 -29.51222 -28.27637 -26.95652 -26.64052 -24.22918 -22.32073 -21.53380 -21.04958 -20.23920 -19.48964 -18.63020 -17.72470 -17.05520 -16.77226 -16.60821 -16.36887 -15.92481 -15.42802 -15.32040 -15.06564 -14.92693 -14.67469 -14.40652 -14.22273 -14.14200 -13.90241 -13.68006 -13.60942 -13.53625 -13.38616 -12.96379 -12.93111 -12.49306 -12.20640 -12.08695 -11.93585 -11.56458 -10.97891 -10.85912 -10.56245 -10.22886 -9.78089 -9.13903 -8.70531 -5.38809 0.33356 0.66343 0.91582 1.27691 1.51794 1.54677 1.60487 1.83638 2.01469 2.37933 3.20426 3.24074 3.25008 3.42381 3.55736 3.67086 3.76271 3.96400 4.11600 4.13057 4.14361 4.14622 4.27199 4.32916 4.46005 4.53630 4.58223 4.66534 4.70091 4.77226 4.79245 4.85687 4.95054 5.05804 5.13033 5.23561 5.29863 5.49072 5.68961 5.93695 6.14141 6.38241 6.45003 7.12964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.252 6.252 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.124 4.124 6 C -0.123 4.123 7 H 0.099 0.901 8 C 0.132 3.868 9 N -0.734 5.734 10 C 0.590 3.410 11 O -0.518 6.518 12 C -0.053 4.053 13 C -0.066 4.066 14 C -0.092 4.092 15 C -0.167 4.167 16 C 0.057 3.943 17 C -0.045 4.045 18 O -0.541 6.541 19 Si 0.682 3.318 20 N -0.542 5.542 21 C -0.099 4.099 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.101 0.899 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.392 0.608 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.090 0.910 35 H 0.386 0.614 36 H -0.250 1.250 37 H -0.250 1.250 38 H 0.406 0.594 39 H 0.097 0.903 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.804 4.716 -0.084 8.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.023 6.023 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.164 4.164 6 C -0.144 4.144 7 H 0.117 0.883 8 C 0.009 3.991 9 N -0.385 5.385 10 C 0.378 3.622 11 O -0.394 6.394 12 C -0.165 4.165 13 C -0.075 4.075 14 C -0.149 4.149 15 C -0.191 4.191 16 C -0.058 4.058 17 C -0.157 4.157 18 O -0.347 6.347 19 Si 0.582 3.418 20 N -0.142 5.142 21 C -0.138 4.138 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.120 0.880 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.225 0.775 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.167 0.833 34 H 0.108 0.892 35 H 0.234 0.766 36 H -0.174 1.174 37 H -0.174 1.174 38 H 0.245 0.755 39 H 0.116 0.884 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.449 2.326 -0.898 5.992 hybrid contribution -1.493 1.261 -0.234 1.968 sum -6.942 3.587 -1.132 7.895 Atomic orbital electron populations 1.23377 0.94150 1.06681 1.04897 1.87007 1.07531 1.10133 1.97614 1.24666 1.01105 0.94474 1.01037 0.87618 1.23432 0.97977 0.99166 0.95802 1.22780 0.95763 0.98978 0.96852 0.88273 1.21402 0.98264 0.88262 0.91173 1.45888 1.27412 1.30881 1.34368 1.16989 0.82770 0.83041 0.79386 1.90848 1.28442 1.50036 1.70027 1.20196 0.93724 0.97455 1.05126 1.20054 0.97084 0.95764 0.94606 1.20394 0.92524 1.01463 1.00533 1.20630 0.95630 0.99076 1.03813 1.19544 0.99679 0.93135 0.93465 1.24021 1.00621 0.84133 1.06876 1.86524 1.42314 1.14187 1.91672 0.94440 0.80333 0.87770 0.79266 1.42015 1.21626 1.23180 1.27428 1.22755 0.93368 0.97826 0.99837 0.90487 0.90476 0.87994 0.91030 0.88272 0.90530 0.90614 0.77549 0.91148 0.91569 0.89993 0.83316 0.89249 0.76590 1.17404 1.17440 0.75521 0.88445 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.14 10.76 101.05 1.09 1.22 16 2 S -0.25 -0.26 22.17 -107.50 -2.38 -2.64 16 3 C -0.08 0.10 4.28 -25.92 -0.11 -0.01 16 4 H 0.11 -0.19 8.14 -51.92 -0.42 -0.62 16 5 C -0.12 0.23 7.22 -25.92 -0.19 0.04 16 6 C -0.12 0.28 3.75 -89.81 -0.34 -0.05 16 7 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 8 C 0.13 -0.03 5.51 -4.04 -0.02 -0.06 16 9 N -0.73 -0.26 5.55 -61.62 -0.34 -0.60 16 10 C 0.59 2.20 7.79 -12.86 -0.10 2.10 16 11 O -0.52 -3.52 14.80 5.19 0.08 -3.44 16 12 C -0.05 -0.18 7.06 -81.98 -0.58 -0.76 16 13 C -0.07 -0.26 6.21 -104.16 -0.65 -0.90 16 14 C -0.09 -0.28 9.83 36.00 0.35 0.07 16 15 C -0.17 -0.47 10.66 -39.98 -0.43 -0.90 16 16 C 0.06 0.10 6.13 -81.95 -0.50 -0.40 16 17 C -0.04 0.07 2.97 36.01 0.11 0.17 16 18 O -0.54 0.55 12.86 -35.23 -0.45 0.10 16 19 Si 0.68 -2.19 30.98 -169.99 -5.27 -7.45 16 20 N -0.54 -0.77 5.47 -5.69 -0.03 -0.80 16 21 C -0.10 0.16 7.23 -25.92 -0.19 -0.03 16 22 H 0.08 -0.14 8.14 -51.92 -0.42 -0.56 16 23 H 0.08 -0.13 8.14 -51.92 -0.42 -0.55 16 24 H 0.10 -0.15 8.14 -51.92 -0.42 -0.57 16 25 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 26 H 0.10 -0.07 7.86 -51.93 -0.41 -0.48 16 27 H 0.08 0.06 7.85 -51.93 -0.41 -0.35 16 28 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.39 -0.78 7.60 -40.82 -0.31 -1.09 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.08 0.36 6.49 -51.92 -0.34 0.03 16 33 H 0.15 0.22 8.06 -52.49 -0.42 -0.21 16 34 H 0.09 -0.29 7.96 -51.93 -0.41 -0.71 16 35 H 0.39 -2.42 8.74 45.56 0.40 -2.02 16 36 H -0.25 0.15 7.11 56.52 0.40 0.55 16 37 H -0.25 0.28 7.11 56.52 0.40 0.68 16 38 H 0.41 -0.33 6.00 -40.82 -0.24 -0.57 16 39 H 0.10 -0.08 8.06 -51.93 -0.42 -0.50 16 40 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 LS Contribution 345.48 15.07 5.21 5.21 Total: 0.00 -8.25 345.48 -10.73 -18.99 By element: Atomic # 1 Polarization: -3.86 SS G_CDS: -5.99 Total: -9.85 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.55 Total: 0.49 kcal Atomic # 7 Polarization: -1.03 SS G_CDS: -0.37 Total: -1.40 kcal Atomic # 8 Polarization: -2.96 SS G_CDS: -0.38 Total: -3.34 kcal Atomic # 14 Polarization: -2.19 SS G_CDS: -5.27 Total: -7.45 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -2.38 Total: -2.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -8.25 -10.73 -18.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.825 kcal (2) G-P(sol) polarization free energy of solvation -8.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds