Wall clock time and date at job start Tue Mar 9 2021 12:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81397 * 103.00143 * 2 1 4 4 H 1.09011 * 112.84572 * 316.19821 * 3 2 1 5 5 C 1.53777 * 113.61627 * 87.49864 * 3 2 1 6 6 C 1.53782 * 87.08253 * 139.98452 * 5 3 2 7 7 H 1.09002 * 113.61224 * 89.11632 * 6 5 3 8 8 C 1.52998 * 113.68910 * 220.01218 * 6 5 3 9 9 N 1.46499 * 109.47223 * 272.52826 * 8 6 5 10 10 C 1.34772 * 120.00372 * 180.02562 * 9 8 6 11 11 O 1.21694 * 119.99812 * 0.02562 * 10 9 8 12 12 C 1.46676 * 120.00147 * 180.02562 * 10 9 8 13 13 C 1.37879 * 126.23301 * 180.02562 * 12 10 9 14 14 C 1.50693 * 126.45660 * 359.92934 * 13 12 10 15 15 C 1.39839 * 107.08153 * 179.97438 * 13 12 10 16 16 C 1.35446 * 107.86792 * 0.02562 * 15 13 12 17 17 C 1.50702 * 125.56526 * 180.02562 * 16 15 13 18 18 O 1.42902 * 109.47085 * 64.99716 * 17 16 15 19 19 Si 1.86298 * 109.47218 * 184.99943 * 17 16 15 20 20 N 1.35538 * 108.87134 * 359.76709 * 16 15 13 21 21 C 1.53778 * 113.61839 * 185.00026 * 3 2 1 22 22 H 1.09002 * 109.47124 * 60.00087 * 1 2 3 23 23 H 1.09001 * 109.46975 * 300.00209 * 1 2 3 24 24 H 1.09004 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.09002 * 113.61654 * 254.53209 * 5 3 2 26 26 H 1.09004 * 113.61738 * 25.43475 * 5 3 2 27 27 H 1.08997 * 109.47639 * 32.53446 * 8 6 5 28 28 H 1.09003 * 109.47019 * 152.53484 * 8 6 5 29 29 H 0.97001 * 119.99765 * 0.02562 * 9 8 6 30 30 H 1.09006 * 109.47405 * 89.99922 * 14 13 12 31 31 H 1.08999 * 109.47537 * 210.00161 * 14 13 12 32 32 H 1.09007 * 109.47579 * 330.00181 * 14 13 12 33 33 H 1.07994 * 126.06123 * 179.97438 * 15 13 12 34 34 H 1.08997 * 109.46759 * 305.00155 * 17 16 15 35 35 H 0.96696 * 113.99884 * 180.02562 * 18 17 16 36 36 H 1.48496 * 109.99891 * 299.99724 * 19 17 16 37 37 H 1.48498 * 110.00009 * 61.31723 * 19 17 16 38 38 H 0.97001 * 125.67731 * 180.26322 * 20 16 15 39 39 H 1.09004 * 113.60724 * 334.56568 * 21 3 2 40 40 H 1.08991 * 113.61499 * 105.46693 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 -0.6953 5 6 2.3008 2.3816 1.4076 6 6 3.5206 3.1738 0.9083 7 1 3.2643 4.1348 0.4623 8 6 4.6489 3.2779 1.9365 9 7 4.4210 4.4426 2.7954 10 6 5.2935 4.7348 3.7801 11 8 6.2709 4.0314 3.9555 12 6 5.0650 5.9006 4.6404 13 6 5.8698 6.3167 5.6798 14 6 7.1441 5.6598 6.1439 15 6 5.2800 7.4625 6.2226 16 6 4.1502 7.7203 5.5214 17 6 3.2057 8.8677 5.7719 18 8 3.8750 10.1021 5.5069 19 14 1.7262 8.7103 4.6507 20 7 4.0107 6.7813 4.5541 21 6 3.7284 2.0520 -0.1228 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.4456 3.0090 1.6588 26 1 2.5394 1.6579 2.1871 27 1 4.6690 2.3749 2.5465 28 1 5.6022 3.3886 1.4197 29 1 3.6421 5.0035 2.6553 30 1 7.9900 6.0861 5.6047 31 1 7.2719 5.8295 7.2130 32 1 7.0923 4.5884 5.9498 33 1 5.6579 8.0390 7.0540 34 1 2.8778 8.8480 6.8112 35 1 3.3259 10.8854 5.6480 36 1 2.1601 8.7358 3.2308 37 1 1.0033 7.4454 4.9382 38 1 3.2875 6.7365 3.9091 39 1 4.3572 1.2381 0.2382 40 1 4.0256 2.4133 -1.1072 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:34 Heat of formation + Delta-G solvation = 2.589685 kcal Electronic energy + Delta-G solvation = -21539.775480 eV Core-core repulsion = 18255.884063 eV Total energy + Delta-G solvation = -3283.891417 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.74659 -40.75334 -39.68814 -37.65170 -35.87879 -33.79182 -31.87450 -30.01299 -29.52234 -28.42766 -26.85908 -26.65768 -24.21899 -22.48661 -21.66115 -21.03459 -20.36321 -19.58508 -18.47422 -17.74608 -17.12563 -16.86945 -16.67840 -16.42642 -15.84392 -15.45188 -15.35140 -15.11214 -15.04467 -14.67986 -14.31731 -14.18773 -14.16201 -14.01323 -13.72956 -13.59168 -13.56293 -13.52635 -13.09789 -12.90895 -12.49114 -12.12111 -12.00290 -11.89075 -11.46272 -11.21698 -10.85409 -10.42494 -10.37409 -9.95129 -9.30883 -8.76919 -5.11893 0.13226 0.71240 1.12885 1.38863 1.57998 1.58516 1.72075 1.76509 1.91957 2.12307 3.29172 3.33471 3.36470 3.52130 3.66767 3.67618 3.81985 4.00826 4.04821 4.15760 4.23806 4.25168 4.26518 4.42353 4.51146 4.61990 4.64635 4.66563 4.71509 4.75633 4.80098 4.80774 4.85648 4.93495 5.03427 5.12661 5.27011 5.32846 5.51857 5.73572 6.07541 6.28218 6.88201 6.92397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.316 6.316 3 C -0.072 4.072 4 H 0.119 0.881 5 C -0.120 4.120 6 C -0.108 4.108 7 H 0.120 0.880 8 C 0.134 3.866 9 N -0.718 5.718 10 C 0.586 3.414 11 O -0.558 6.558 12 C -0.070 4.070 13 C -0.087 4.087 14 C -0.088 4.088 15 C -0.186 4.186 16 C 0.056 3.944 17 C -0.059 4.059 18 O -0.562 6.562 19 Si 0.775 3.225 20 N -0.535 5.535 21 C -0.101 4.101 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.405 0.595 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.158 0.842 34 H 0.111 0.889 35 H 0.408 0.592 36 H -0.284 1.284 37 H -0.276 1.276 38 H 0.416 0.584 39 H 0.084 0.916 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 6.424 -0.304 10.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.087 6.087 3 C -0.200 4.200 4 H 0.137 0.863 5 C -0.160 4.160 6 C -0.128 4.128 7 H 0.138 0.862 8 C 0.010 3.990 9 N -0.370 5.370 10 C 0.375 3.625 11 O -0.436 6.436 12 C -0.182 4.182 13 C -0.096 4.096 14 C -0.145 4.145 15 C -0.210 4.210 16 C -0.060 4.060 17 C -0.169 4.169 18 O -0.372 6.372 19 Si 0.678 3.322 20 N -0.136 5.136 21 C -0.140 4.140 22 H 0.105 0.895 23 H 0.103 0.897 24 H 0.122 0.878 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.240 0.760 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.176 0.824 34 H 0.129 0.871 35 H 0.260 0.740 36 H -0.211 1.211 37 H -0.202 1.202 38 H 0.256 0.744 39 H 0.103 0.897 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.334 4.070 -1.118 8.461 hybrid contribution -0.928 0.756 -0.163 1.208 sum -8.261 4.826 -1.281 9.653 Atomic orbital electron populations 1.23377 0.91684 1.07103 1.05711 1.87232 1.10459 1.13266 1.97767 1.24713 1.01250 0.92363 1.01702 0.86295 1.23376 0.98560 0.98949 0.95110 1.22705 0.94593 0.99646 0.95862 0.86239 1.21402 0.98911 0.87422 0.91234 1.45774 1.27080 1.30870 1.33262 1.17134 0.82672 0.82878 0.79827 1.90822 1.30180 1.51368 1.71276 1.20166 0.94638 0.97954 1.05430 1.20314 0.97520 0.96556 0.95243 1.20337 0.92514 1.00252 1.01416 1.20838 0.96394 0.99114 1.04632 1.20152 0.99766 0.93586 0.92498 1.24362 1.00370 0.83091 1.09088 1.86464 1.43719 1.15140 1.91884 0.93313 0.77551 0.85688 0.75658 1.42022 1.21379 1.22696 1.27516 1.22773 0.93151 0.97676 1.00423 0.89548 0.89697 0.87838 0.89532 0.89680 0.91847 0.91440 0.75950 0.91418 0.90136 0.91740 0.82445 0.87119 0.73973 1.21093 1.20226 0.74365 0.89717 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.28 10.76 113.37 1.22 1.50 16 2 S -0.32 -0.87 22.17 -56.49 -1.25 -2.12 16 3 C -0.07 0.20 4.28 31.12 0.13 0.33 16 4 H 0.12 -0.62 8.14 -2.38 -0.02 -0.64 16 5 C -0.12 0.51 7.22 31.12 0.22 0.73 16 6 C -0.11 0.55 3.75 -10.27 -0.04 0.51 16 7 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 8 C 0.13 0.04 5.51 86.38 0.48 0.52 16 9 N -0.72 -0.89 5.55 -467.09 -2.59 -3.48 16 10 C 0.59 5.27 7.79 86.45 0.67 5.94 16 11 O -0.56 -8.97 14.80 -4.33 -0.06 -9.03 16 12 C -0.07 -0.55 7.06 40.35 0.28 -0.27 16 13 C -0.09 -0.80 6.21 -19.56 -0.12 -0.92 16 14 C -0.09 -0.72 9.83 71.23 0.70 -0.02 16 15 C -0.19 -1.13 10.66 22.01 0.23 -0.90 16 16 C 0.06 0.18 6.13 41.34 0.25 0.43 16 17 C -0.06 0.26 2.97 71.24 0.21 0.47 16 18 O -0.56 1.95 12.86 -148.98 -1.92 0.03 16 19 Si 0.78 -6.22 30.98 68.60 2.13 -4.10 16 20 N -0.53 -1.53 5.47 -171.93 -0.94 -2.47 16 21 C -0.10 0.32 7.23 31.12 0.22 0.54 16 22 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 23 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 24 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H 0.08 -0.07 7.86 -2.39 -0.02 -0.09 16 27 H 0.06 0.21 7.85 -2.39 -0.02 0.19 16 28 H 0.07 0.16 8.14 -2.39 -0.02 0.15 16 29 H 0.41 -1.81 7.60 -92.71 -0.70 -2.52 16 30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 0.75 6.49 -2.38 -0.02 0.73 16 33 H 0.16 0.51 8.06 -2.91 -0.02 0.48 16 34 H 0.11 -0.95 7.96 -2.39 -0.02 -0.97 16 35 H 0.41 -5.90 8.74 -74.06 -0.65 -6.55 16 36 H -0.28 0.64 7.11 99.48 0.71 1.35 16 37 H -0.28 1.01 7.11 99.48 0.71 1.72 16 38 H 0.42 -0.88 6.00 -92.71 -0.56 -1.44 16 39 H 0.08 -0.02 8.06 -2.38 -0.02 -0.04 16 40 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 Total: 0.00 -21.31 345.48 -0.97 -22.28 By element: Atomic # 1 Polarization: -9.17 SS G_CDS: -0.80 Total: -9.97 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 4.48 Total: 8.87 kcal Atomic # 7 Polarization: -2.42 SS G_CDS: -3.53 Total: -5.95 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -1.98 Total: -9.00 kcal Atomic # 14 Polarization: -6.22 SS G_CDS: 2.13 Total: -4.10 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -1.25 Total: -2.12 kcal Total: -21.31 -0.97 -22.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.869 kcal (2) G-P(sol) polarization free energy of solvation -21.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds