Wall clock time and date at job start Tue Mar 9 2021 12:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81393 * 103.00152 * 2 1 4 4 H 1.09003 * 112.85169 * 316.19934 * 3 2 1 5 5 C 1.53957 * 113.74325 * 87.40404 * 3 2 1 6 6 C 1.53782 * 87.02124 * 139.94377 * 5 3 2 7 7 H 1.09000 * 113.61140 * 89.22834 * 6 5 3 8 8 C 1.52995 * 113.61652 * 220.04574 * 6 5 3 9 9 N 1.46501 * 109.47428 * 274.13840 * 8 6 5 10 10 C 1.34775 * 119.99896 * 179.97438 * 9 8 6 11 11 O 1.21277 * 120.00139 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00018 * 179.97438 * 10 9 8 13 13 C 1.50696 * 109.47178 * 180.02562 * 12 10 9 14 14 C 1.34852 * 125.88991 * 274.96040 * 13 12 10 15 15 C 1.40897 * 107.41174 * 179.80838 * 14 13 12 16 16 C 1.34849 * 107.42061 * 0.37848 * 15 14 13 17 17 C 1.50699 * 125.89093 * 179.88782 * 16 15 14 18 18 O 1.42901 * 109.46830 * 119.68856 * 17 16 15 19 19 Si 1.86298 * 109.46950 * 359.69293 * 17 16 15 20 20 N 1.36340 * 125.88900 * 95.00278 * 13 12 10 21 21 C 1.53781 * 113.61708 * 185.00287 * 3 2 1 22 22 H 1.09005 * 109.46986 * 299.99750 * 1 2 3 23 23 H 1.09000 * 109.47068 * 59.99596 * 1 2 3 24 24 H 1.08998 * 109.47375 * 179.97438 * 1 2 3 25 25 H 1.08998 * 113.61627 * 25.42329 * 5 3 2 26 26 H 1.09004 * 113.66530 * 254.47072 * 5 3 2 27 27 H 1.09003 * 109.47232 * 154.13665 * 8 6 5 28 28 H 1.09004 * 109.46968 * 34.13693 * 8 6 5 29 29 H 0.96998 * 119.99426 * 359.97438 * 9 8 6 30 30 H 1.09003 * 109.46755 * 60.00321 * 12 10 9 31 31 H 1.09004 * 109.47106 * 300.00557 * 12 10 9 32 32 H 1.07997 * 126.29295 * 0.02562 * 14 13 12 33 33 H 1.07998 * 126.28655 * 180.24347 * 15 14 13 34 34 H 1.08991 * 109.47351 * 239.69003 * 17 16 15 35 35 H 0.96708 * 114.00246 * 299.99864 * 18 17 16 36 36 H 1.48506 * 109.99834 * 180.02562 * 19 17 16 37 37 H 1.48502 * 110.00011 * 301.31529 * 19 17 16 38 38 H 0.97000 * 125.63551 * 359.94123 * 20 13 12 39 39 H 1.08996 * 113.61881 * 105.38844 * 21 3 2 40 40 H 1.09008 * 113.68952 * 334.49280 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.6110 2.3430 -0.6953 5 6 2.2994 2.3858 1.4078 6 6 3.5203 3.1751 0.9067 7 1 3.2654 4.1358 0.4592 8 6 4.6473 3.2796 1.9361 9 7 4.4001 4.4241 2.8165 10 6 5.2677 4.7123 3.8068 11 8 6.2533 4.0245 3.9687 12 6 5.0138 5.8900 4.7121 13 6 6.1238 5.9928 5.7261 14 6 6.1878 5.3289 6.8981 15 6 7.3862 5.7100 7.5336 16 6 8.0047 6.5985 6.7296 17 6 9.3213 7.2761 7.0095 18 8 10.2574 6.9402 5.9834 19 14 9.9754 6.7052 8.6579 20 7 7.2362 6.7735 5.6171 21 6 3.7284 2.0519 -0.1229 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 2.5368 1.6640 2.1893 26 1 1.4448 3.0150 1.6568 27 1 5.5983 3.4160 1.4212 28 1 4.6832 2.3659 2.5295 29 1 3.6120 4.9745 2.6867 30 1 4.0625 5.7542 5.2267 31 1 4.9785 6.8036 4.1186 32 1 5.4568 4.6305 7.2780 33 1 7.7427 5.3570 8.4900 34 1 9.1769 8.3562 7.0303 35 1 10.4347 5.9926 5.9074 36 1 11.2734 7.3668 8.9459 37 1 8.9967 7.0201 9.7294 38 1 7.4463 7.3569 4.8712 39 1 4.0259 2.4120 -1.1077 40 1 4.3585 1.2393 0.2389 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_14644196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:36 Heat of formation + Delta-G solvation = -1.783009 kcal Electronic energy + Delta-G solvation = -21012.550366 eV Core-core repulsion = 17728.469334 eV Total energy + Delta-G solvation = -3284.081031 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.32160 -40.76531 -39.64404 -37.70262 -35.47262 -33.17333 -31.92175 -30.22375 -29.77622 -28.56674 -26.71741 -25.26718 -23.90316 -21.92541 -21.35678 -21.10162 -20.46646 -18.97661 -18.21256 -17.60427 -17.06184 -16.82515 -16.53866 -16.31019 -16.12342 -15.35688 -15.28634 -14.88368 -14.82717 -14.61277 -14.30634 -14.15496 -14.09200 -13.99227 -13.88609 -13.50909 -13.49272 -13.42635 -12.84966 -12.65122 -12.08486 -11.99281 -11.89483 -11.76090 -11.35057 -10.96331 -10.77182 -10.64757 -10.08334 -9.79400 -8.95252 -8.71460 -4.93067 0.77983 1.10753 1.30179 1.64586 1.65415 1.67900 1.89490 1.91904 2.33062 2.52109 3.40799 3.45635 3.49880 3.63994 3.70720 3.80434 3.81000 4.07750 4.20299 4.21649 4.30620 4.31773 4.36331 4.38652 4.49630 4.62936 4.63709 4.75512 4.76461 4.80155 4.84646 4.86401 4.98070 5.05540 5.25874 5.29280 5.35176 5.50277 6.00103 6.13836 6.55262 6.64069 6.68434 7.29194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.322 6.322 3 C -0.073 4.073 4 H 0.118 0.882 5 C -0.117 4.117 6 C -0.102 4.102 7 H 0.124 0.876 8 C 0.134 3.866 9 N -0.715 5.715 10 C 0.508 3.492 11 O -0.578 6.578 12 C -0.067 4.067 13 C 0.033 3.967 14 C -0.201 4.201 15 C -0.203 4.203 16 C -0.021 4.021 17 C -0.054 4.054 18 O -0.561 6.561 19 Si 0.800 3.200 20 N -0.537 5.537 21 C -0.106 4.106 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.418 0.582 30 H 0.143 0.857 31 H 0.128 0.872 32 H 0.140 0.860 33 H 0.151 0.849 34 H 0.108 0.892 35 H 0.395 0.605 36 H -0.293 1.293 37 H -0.284 1.284 38 H 0.418 0.582 39 H 0.089 0.911 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.222 2.475 -2.302 7.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.093 6.093 3 C -0.201 4.201 4 H 0.136 0.864 5 C -0.156 4.156 6 C -0.122 4.122 7 H 0.142 0.858 8 C 0.010 3.990 9 N -0.369 5.369 10 C 0.295 3.705 11 O -0.457 6.457 12 C -0.107 4.107 13 C -0.081 4.081 14 C -0.226 4.226 15 C -0.228 4.228 16 C -0.135 4.135 17 C -0.163 4.163 18 O -0.368 6.368 19 Si 0.704 3.296 20 N -0.132 5.132 21 C -0.145 4.145 22 H 0.105 0.895 23 H 0.104 0.896 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.256 0.744 30 H 0.161 0.839 31 H 0.146 0.854 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.125 0.875 35 H 0.245 0.755 36 H -0.220 1.220 37 H -0.210 1.210 38 H 0.256 0.744 39 H 0.108 0.892 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.610 2.027 -1.640 5.296 hybrid contribution -1.346 1.542 -0.841 2.213 sum -5.956 3.569 -2.481 7.374 Atomic orbital electron populations 1.23366 0.91631 1.07019 1.05756 1.87249 1.10531 1.13775 1.97790 1.24784 1.01138 0.92020 1.02195 0.86364 1.23367 0.98796 0.98860 0.94619 1.22663 0.94528 0.99447 0.95583 0.85836 1.21237 0.98145 0.88665 0.90989 1.45841 1.27230 1.31815 1.31976 1.21018 0.82342 0.86096 0.81034 1.90756 1.30233 1.52759 1.71910 1.20246 0.97845 0.97801 0.94770 1.19940 0.91091 0.99082 0.98035 1.20858 1.00470 1.04815 0.96449 1.20913 0.97817 1.02329 1.01725 1.20985 0.96884 1.04943 0.90660 1.24971 0.85511 1.01738 1.04094 1.86427 1.62106 1.31648 1.56655 0.92905 0.76181 0.89594 0.70948 1.41881 1.17085 1.36218 1.18041 1.22788 0.93110 0.98007 1.00607 0.89530 0.89619 0.87991 0.89940 0.89055 0.92511 0.92876 0.74427 0.83931 0.85404 0.84168 0.83139 0.87487 0.75528 1.22045 1.21038 0.74402 0.89194 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.34 10.76 113.37 1.22 1.56 16 2 S -0.32 -0.71 22.19 -56.49 -1.25 -1.97 16 3 C -0.07 0.28 4.27 31.18 0.13 0.41 16 4 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 5 C -0.12 0.73 7.24 31.18 0.23 0.96 16 6 C -0.10 0.77 3.75 -10.27 -0.04 0.73 16 7 H 0.12 -1.42 8.14 -2.39 -0.02 -1.44 16 8 C 0.13 -0.35 5.50 86.38 0.47 0.13 16 9 N -0.72 3.74 5.56 -463.06 -2.57 1.16 16 10 C 0.51 0.50 7.82 87.66 0.69 1.18 16 11 O -0.58 -6.98 16.03 -3.02 -0.05 -7.03 16 12 C -0.07 0.33 6.24 29.10 0.18 0.51 16 13 C 0.03 0.09 5.66 41.08 0.23 0.32 16 14 C -0.20 -1.09 10.77 22.14 0.24 -0.85 16 15 C -0.20 -1.01 9.37 22.14 0.21 -0.80 16 16 C -0.02 -0.09 6.50 41.08 0.27 0.18 16 17 C -0.05 -0.10 3.08 71.24 0.22 0.12 16 18 O -0.56 -1.63 12.88 -148.98 -1.92 -3.54 16 19 Si 0.80 0.02 30.58 68.60 2.10 2.12 16 20 N -0.54 -1.52 6.07 -171.12 -1.04 -2.56 16 21 C -0.11 0.44 7.23 31.12 0.23 0.66 16 22 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 23 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 24 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 25 H 0.08 -0.21 7.88 -2.39 -0.02 -0.23 16 26 H 0.09 -0.86 8.14 -2.38 -0.02 -0.88 16 27 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.05 0.10 7.88 -2.39 -0.02 0.08 16 29 H 0.42 -5.19 8.47 -92.71 -0.79 -5.97 16 30 H 0.14 -1.44 8.14 -2.39 -0.02 -1.46 16 31 H 0.13 -1.37 8.14 -2.39 -0.02 -1.39 16 32 H 0.14 0.47 8.06 -2.91 -0.02 0.44 16 33 H 0.15 0.23 6.22 -2.91 -0.02 0.21 16 34 H 0.11 0.20 7.96 -2.39 -0.02 0.18 16 35 H 0.39 -1.27 8.70 -74.05 -0.64 -1.91 16 36 H -0.29 -1.80 7.11 99.48 0.71 -1.10 16 37 H -0.28 -1.37 7.11 99.48 0.71 -0.66 16 38 H 0.42 -0.24 8.96 -92.71 -0.83 -1.07 16 39 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.08 -0.05 8.06 -2.38 -0.02 -0.07 16 Total: 0.00 -22.85 349.33 -1.62 -24.47 By element: Atomic # 1 Polarization: -16.60 SS G_CDS: -1.16 Total: -17.76 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 4.27 Total: 5.11 kcal Atomic # 7 Polarization: 2.21 SS G_CDS: -3.61 Total: -1.40 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.97 Total: -10.58 kcal Atomic # 14 Polarization: 0.02 SS G_CDS: 2.10 Total: 2.12 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -1.25 Total: -1.97 kcal Total: -22.85 -1.62 -24.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_14644196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.684 kcal (2) G-P(sol) polarization free energy of solvation -22.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds