Wall clock time and date at job start Tue Mar 9 2021 12:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81407 * 102.99801 * 2 1 4 4 H 1.09001 * 112.90307 * 43.75366 * 3 2 1 5 5 C 1.53781 * 113.61532 * 174.99912 * 3 2 1 6 6 C 1.53780 * 87.08106 * 139.98437 * 5 3 2 7 7 H 1.08993 * 113.61544 * 89.19805 * 6 5 3 8 8 C 1.52997 * 113.61470 * 220.02475 * 6 5 3 9 9 N 1.46505 * 109.47240 * 183.47020 * 8 6 5 10 10 C 1.34779 * 120.00037 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99968 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99751 * 179.97438 * 10 9 8 13 13 O 1.42899 * 109.46691 * 180.02562 * 12 10 9 14 14 C 1.35898 * 116.99584 * 180.02562 * 13 12 10 15 15 C 1.38719 * 120.05545 * 180.23053 * 14 13 12 16 16 C 1.50693 * 120.02704 * 0.02562 * 15 14 13 17 17 O 1.42908 * 109.47075 * 75.30072 * 16 15 14 18 18 Si 1.86301 * 109.47314 * 195.29801 * 16 15 14 19 19 C 1.38163 * 119.94368 * 180.31820 * 15 14 13 20 20 C 1.38251 * 120.05527 * 359.41885 * 19 15 14 21 21 C 1.38281 * 120.11067 * 0.30253 * 20 19 15 22 22 C 1.38128 * 120.05740 * 359.97438 * 21 20 19 23 23 C 1.53790 * 87.16971 * 334.61095 * 6 5 3 24 24 H 1.08997 * 109.46678 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46767 * 299.99332 * 1 2 3 26 26 H 1.08996 * 109.47524 * 59.99844 * 1 2 3 27 27 H 1.08995 * 113.61264 * 25.43417 * 5 3 2 28 28 H 1.08999 * 113.69277 * 254.54805 * 5 3 2 29 29 H 1.08996 * 109.47367 * 63.46611 * 8 6 5 30 30 H 1.09005 * 109.47137 * 303.47027 * 8 6 5 31 31 H 0.97000 * 119.99675 * 359.97438 * 9 8 6 32 32 H 1.08991 * 109.46920 * 60.00459 * 12 10 9 33 33 H 1.09001 * 109.46846 * 300.00445 * 12 10 9 34 34 H 1.09004 * 109.47616 * 315.29970 * 16 15 14 35 35 H 0.96702 * 113.99773 * 180.02562 * 17 16 15 36 36 H 1.48500 * 110.00057 * 300.00237 * 18 16 15 37 37 H 1.48498 * 109.99905 * 61.32029 * 18 16 15 38 38 H 1.08002 * 119.97507 * 179.70460 * 19 15 14 39 39 H 1.07998 * 119.94295 * 180.27771 * 20 19 15 40 40 H 1.08005 * 119.97244 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.02945 * 179.97438 * 22 21 20 42 42 H 1.09003 * 113.60843 * 139.94057 * 23 6 5 43 43 H 1.08998 * 113.61357 * 270.83629 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.6107 2.3440 0.6944 5 6 3.7283 2.0521 0.1228 6 6 3.5205 3.1740 -0.9083 7 1 3.2655 4.1352 -0.4622 8 6 4.6477 3.2768 -1.9376 9 7 4.4007 4.4202 -2.8197 10 6 5.2691 4.7075 -3.8096 11 8 6.2547 4.0193 -3.9705 12 6 5.0147 5.8833 -4.7173 13 8 6.0676 5.9794 -5.6786 14 6 5.9903 6.9944 -6.5789 15 6 6.9759 7.1442 -7.5435 16 6 8.1336 6.1809 -7.5945 17 8 7.6962 4.9396 -8.1514 18 14 9.4887 6.8942 -8.6555 19 6 6.8984 8.1809 -8.4534 20 6 5.8335 9.0615 -8.4109 21 6 4.8467 8.9109 -7.4539 22 6 4.9225 7.8795 -6.5383 23 6 2.2996 2.3839 -1.4086 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 4.3571 1.2384 -0.2381 28 1 4.0269 2.4133 1.1069 29 1 4.6837 2.3623 -2.5296 30 1 5.5986 3.4138 -1.4227 31 1 3.6123 4.9704 -2.6913 32 1 4.9781 6.7978 -4.1255 33 1 4.0641 5.7456 -5.2325 34 1 8.5119 6.0135 -6.5860 35 1 8.3912 4.2701 -8.2143 36 1 8.9858 7.1270 -10.0332 37 1 9.9743 8.1694 -8.0698 38 1 7.6680 8.3009 -9.2016 39 1 5.7724 9.8686 -9.1259 40 1 4.0159 9.6004 -7.4224 41 1 4.1517 7.7626 -5.7909 42 1 1.4451 3.0128 -1.6587 43 1 2.5372 1.6611 -2.1890 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_2989392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:44 Heat of formation + Delta-G solvation = -43.843985 kcal Electronic energy + Delta-G solvation = -24397.168480 eV Core-core repulsion = 20729.781126 eV Total energy + Delta-G solvation = -3667.387354 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67757 -40.81032 -39.76888 -38.49846 -37.49982 -35.63383 -32.98337 -31.57071 -30.53802 -29.81826 -28.29910 -26.72936 -26.68961 -24.33576 -23.40214 -22.56144 -21.78491 -20.53459 -19.41289 -18.56243 -18.43067 -17.50876 -17.45358 -17.34746 -16.88254 -16.75907 -16.44272 -15.90037 -15.76409 -15.37371 -15.17299 -15.07916 -14.78417 -14.69386 -14.26849 -14.09526 -14.04940 -13.79233 -13.61436 -13.51134 -13.46330 -13.05876 -12.82566 -12.74436 -12.20577 -12.02682 -11.93118 -11.84724 -11.76144 -11.37490 -11.02662 -10.78835 -10.26948 -10.22628 -10.11153 -9.33413 -8.72379 -4.97359 0.08299 0.27852 0.76881 1.27167 1.41603 1.44830 1.60540 1.64093 1.89336 2.52522 2.56305 3.34811 3.41937 3.44932 3.55882 3.65361 3.68085 3.78399 3.85982 3.94619 4.02836 4.06217 4.13902 4.16533 4.22556 4.29686 4.30667 4.33403 4.40041 4.53654 4.60366 4.73371 4.75059 4.81474 4.84890 4.85126 4.95720 5.02869 5.15491 5.22976 5.24996 5.36831 5.42931 5.60907 6.19125 6.43160 6.85829 7.09881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.322 6.322 3 C -0.072 4.072 4 H 0.120 0.880 5 C -0.105 4.105 6 C -0.102 4.102 7 H 0.127 0.873 8 C 0.134 3.866 9 N -0.706 5.706 10 C 0.512 3.488 11 O -0.570 6.570 12 C 0.035 3.965 13 O -0.308 6.308 14 C 0.133 3.867 15 C -0.137 4.137 16 C -0.079 4.079 17 O -0.564 6.564 18 Si 0.781 3.219 19 C -0.105 4.105 20 C -0.158 4.158 21 C -0.073 4.073 22 C -0.207 4.207 23 C -0.119 4.119 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.421 0.579 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.397 0.603 36 H -0.281 1.281 37 H -0.286 1.286 38 H 0.125 0.875 39 H 0.148 0.852 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.092 0.908 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 4.418 3.076 7.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.094 6.094 3 C -0.201 4.201 4 H 0.138 0.862 5 C -0.144 4.144 6 C -0.122 4.122 7 H 0.145 0.855 8 C 0.010 3.990 9 N -0.361 5.361 10 C 0.297 3.703 11 O -0.449 6.449 12 C -0.043 4.043 13 O -0.221 6.221 14 C 0.087 3.913 15 C -0.138 4.138 16 C -0.188 4.188 17 O -0.372 6.372 18 Si 0.685 3.315 19 C -0.122 4.122 20 C -0.176 4.176 21 C -0.090 4.090 22 C -0.225 4.225 23 C -0.158 4.158 24 H 0.120 0.880 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.259 0.741 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.083 0.917 35 H 0.247 0.753 36 H -0.209 1.209 37 H -0.212 1.212 38 H 0.142 0.858 39 H 0.166 0.834 40 H 0.179 0.821 41 H 0.182 0.818 42 H 0.110 0.890 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.148 3.817 2.524 6.176 hybrid contribution -1.639 0.963 0.468 1.957 sum -5.787 4.780 2.991 8.080 Atomic orbital electron populations 1.23364 0.91642 1.07012 1.05758 1.87264 1.10525 1.13810 1.97787 1.24781 1.01190 0.92006 1.02113 0.86224 1.22787 0.93100 0.97917 1.00623 1.22678 0.94315 0.99701 0.95485 0.85502 1.21332 0.98679 0.88173 0.90842 1.45628 1.26798 1.32186 1.31443 1.20467 0.82871 0.85504 0.81416 1.90767 1.30118 1.52239 1.71745 1.22755 0.91891 0.98734 0.90946 1.86164 1.46983 1.47253 1.41677 1.18991 0.94700 0.87946 0.89663 1.19049 0.97806 0.99057 0.97845 1.24857 1.01505 0.88217 1.04206 1.86442 1.41963 1.23921 1.84922 0.94148 0.80762 0.81118 0.75488 1.21016 0.99197 0.94920 0.97117 1.21373 0.94582 1.00616 1.01034 1.21426 0.98512 0.96551 0.92544 1.21685 0.99236 0.97493 1.04129 1.23389 0.98839 0.98919 0.94704 0.88021 0.89562 0.89570 0.90149 0.88971 0.92633 0.91914 0.74075 0.85638 0.86165 0.91737 0.75335 1.20868 1.21246 0.85800 0.83422 0.82054 0.81770 0.88977 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.34 10.76 113.37 1.22 1.56 16 2 S -0.32 -0.71 22.18 -56.49 -1.25 -1.96 16 3 C -0.07 0.30 4.28 31.18 0.13 0.43 16 4 H 0.12 -0.79 8.14 -2.39 -0.02 -0.81 16 5 C -0.10 0.47 7.23 31.12 0.23 0.69 16 6 C -0.10 0.79 3.75 -10.27 -0.04 0.76 16 7 H 0.13 -1.55 8.14 -2.39 -0.02 -1.57 16 8 C 0.13 -0.32 5.50 86.38 0.47 0.15 16 9 N -0.71 3.13 5.56 -463.05 -2.57 0.55 16 10 C 0.51 1.90 7.91 87.66 0.69 2.59 16 11 O -0.57 -8.89 16.50 16.00 0.26 -8.62 16 12 C 0.03 -0.04 5.22 71.24 0.37 0.33 16 13 O -0.31 -2.79 9.00 -73.37 -0.66 -3.45 16 14 C 0.13 1.03 6.66 22.51 0.15 1.18 16 15 C -0.14 -1.36 5.30 -19.77 -0.10 -1.46 16 16 C -0.08 -0.62 2.37 71.23 0.17 -0.45 16 17 O -0.56 -5.01 12.86 -148.98 -1.92 -6.93 16 18 Si 0.78 1.97 30.20 68.60 2.07 4.04 16 19 C -0.10 -0.79 8.66 22.26 0.19 -0.60 16 20 C -0.16 -0.46 10.04 22.28 0.22 -0.23 16 21 C -0.07 0.02 10.04 22.25 0.22 0.24 16 22 C -0.21 -0.16 9.04 22.37 0.20 0.04 16 23 C -0.12 0.76 7.24 31.18 0.23 0.98 16 24 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 25 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H 0.08 -0.07 8.06 -2.39 -0.02 -0.09 16 28 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H 0.06 0.11 7.87 -2.39 -0.02 0.09 16 30 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 31 H 0.42 -5.25 8.47 -92.71 -0.79 -6.03 16 32 H 0.13 -1.03 7.66 -2.39 -0.02 -1.05 16 33 H 0.12 -0.84 7.66 -2.39 -0.02 -0.86 16 34 H 0.06 0.55 7.82 -2.39 -0.02 0.53 16 35 H 0.40 -0.41 8.74 -74.06 -0.65 -1.06 16 36 H -0.28 -2.05 6.75 99.48 0.67 -1.38 16 37 H -0.29 -2.05 7.11 99.48 0.71 -1.35 16 38 H 0.12 0.84 4.90 -2.91 -0.01 0.83 16 39 H 0.15 -0.27 8.06 -2.91 -0.02 -0.29 16 40 H 0.16 -1.11 8.06 -2.91 -0.02 -1.14 16 41 H 0.16 -1.16 6.30 -2.91 -0.02 -1.18 16 42 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 43 H 0.08 -0.20 7.88 -2.39 -0.02 -0.22 16 Total: 0.00 -28.34 370.75 -0.11 -28.44 By element: Atomic # 1 Polarization: -17.88 SS G_CDS: -0.40 Total: -18.28 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 4.36 Total: 6.21 kcal Atomic # 7 Polarization: 3.13 SS G_CDS: -2.57 Total: 0.55 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -2.31 Total: -19.00 kcal Atomic # 14 Polarization: 1.97 SS G_CDS: 2.07 Total: 4.04 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -1.25 Total: -1.96 kcal Total: -28.34 -0.11 -28.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_2989392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.400 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds