Wall clock time and date at job start Tue Mar 9 2021 12:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81400 * 102.99682 * 2 1 4 4 H 1.09000 * 112.91114 * 316.24643 * 3 2 1 5 5 C 1.53785 * 113.61628 * 87.50278 * 3 2 1 6 6 C 1.53782 * 87.08339 * 139.98249 * 5 3 2 7 7 H 1.08998 * 113.69339 * 89.12626 * 6 5 3 8 8 C 1.52998 * 113.61617 * 220.02400 * 6 5 3 9 9 N 1.46501 * 109.46852 * 272.49521 * 8 6 5 10 10 C 1.34772 * 120.00326 * 179.97438 * 9 8 6 11 11 O 1.21281 * 120.00086 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00298 * 180.02562 * 10 9 8 13 13 C 1.52994 * 109.47158 * 180.02562 * 12 10 9 14 14 O 1.42900 * 109.47389 * 180.02562 * 13 12 10 15 15 C 1.35899 * 117.00511 * 180.02562 * 14 13 12 16 16 C 1.38726 * 120.05721 * 180.02562 * 15 14 13 17 17 C 1.38153 * 119.94564 * 180.02562 * 16 15 14 18 18 C 1.38269 * 120.05022 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.93900 * 179.97438 * 18 17 16 20 20 O 1.42896 * 109.47341 * 300.00123 * 19 18 17 21 21 Si 1.86300 * 109.46849 * 180.02562 * 19 18 17 22 22 C 1.38264 * 120.11486 * 0.25533 * 18 17 16 23 23 C 1.38143 * 120.05501 * 359.44957 * 22 18 17 24 24 C 1.53785 * 113.61401 * 185.00131 * 3 2 1 25 25 H 1.08997 * 109.47246 * 60.00365 * 1 2 3 26 26 H 1.09012 * 109.46694 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47344 * 299.99621 * 1 2 3 28 28 H 1.08991 * 113.61209 * 25.43103 * 5 3 2 29 29 H 1.08996 * 113.61467 * 254.53037 * 5 3 2 30 30 H 1.08990 * 109.47628 * 152.49290 * 8 6 5 31 31 H 1.09001 * 109.46992 * 32.49049 * 8 6 5 32 32 H 0.96999 * 119.99945 * 359.97438 * 9 8 6 33 33 H 1.08996 * 109.47386 * 60.00199 * 12 10 9 34 34 H 1.09001 * 109.46860 * 299.99825 * 12 10 9 35 35 H 1.09007 * 109.47542 * 59.99595 * 13 12 10 36 36 H 1.09003 * 109.47466 * 299.99915 * 13 12 10 37 37 H 1.07999 * 120.03394 * 359.97438 * 16 15 14 38 38 H 1.07995 * 119.97802 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.46989 * 60.00454 * 19 18 17 40 40 H 0.96693 * 114.00306 * 299.99773 * 20 19 18 41 41 H 1.48506 * 110.00048 * 58.68772 * 21 19 18 42 42 H 1.48502 * 109.99996 * 180.02562 * 21 19 18 43 43 H 1.08002 * 119.97450 * 179.70367 * 22 18 17 44 44 H 1.07999 * 120.02707 * 180.25811 * 23 22 18 45 45 H 1.09000 * 113.61351 * 105.47137 * 24 3 2 46 46 H 1.08998 * 113.69099 * 334.57706 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 1 1.6107 2.3441 -0.6943 5 6 2.3007 2.3816 1.4077 6 6 3.5204 3.1740 0.9084 7 1 3.2655 4.1353 0.4623 8 6 4.6477 3.2768 1.9376 9 7 4.4200 4.4415 2.7966 10 6 5.2912 4.7321 3.7829 11 8 6.2641 4.0298 3.9592 12 6 5.0566 5.9299 4.6669 13 6 6.1839 6.0328 5.6961 14 8 5.9612 7.1682 6.5347 15 6 6.8783 7.4051 7.5091 16 6 6.7239 8.4900 8.3598 17 6 7.6580 8.7289 9.3493 18 6 8.7463 7.8880 9.4917 19 6 9.7640 8.1513 10.5716 20 8 10.3468 9.4407 10.3727 21 14 11.0959 6.8507 10.4999 22 6 8.9055 6.8094 8.6414 23 6 7.9711 6.5627 7.6544 24 6 3.7282 2.0521 -0.1228 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 2.5393 1.6579 2.1870 29 1 1.4455 3.0090 1.6588 30 1 5.6016 3.3866 1.4220 31 1 4.6663 2.3736 2.5476 32 1 3.6421 5.0035 2.6554 33 1 4.1025 5.8198 5.1824 34 1 5.0380 6.8333 4.0572 35 1 7.1379 6.1431 5.1803 36 1 6.2030 5.1295 6.3058 37 1 5.8747 9.1478 8.2482 38 1 7.5385 9.5735 10.0115 39 1 9.2764 8.1192 11.5459 40 1 10.7989 9.5414 9.5240 41 1 11.7470 6.8634 9.1652 42 1 12.1056 7.0987 11.5603 43 1 9.7590 6.1567 8.7517 44 1 8.0937 5.7176 6.9931 45 1 4.0254 2.4135 -1.1073 46 1 4.3583 1.2390 0.2376 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_4549602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:50 Heat of formation + Delta-G solvation = -58.228708 kcal Electronic energy + Delta-G solvation = -25314.372697 eV Core-core repulsion = 21490.823956 eV Total energy + Delta-G solvation = -3823.548741 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39017 -40.93442 -39.91666 -39.11712 -37.23747 -35.61178 -33.46319 -32.03360 -31.45725 -30.07021 -29.46310 -26.93067 -26.55184 -25.59934 -24.13777 -23.26471 -22.16952 -21.65734 -20.64538 -19.49068 -18.39960 -18.07578 -17.56765 -17.53189 -17.01364 -16.91543 -16.63693 -16.35031 -16.19036 -16.05878 -15.58347 -15.30232 -15.07138 -14.69974 -14.65276 -14.48636 -14.41567 -14.21463 -14.16055 -13.89554 -13.67144 -13.60616 -13.39993 -13.02926 -12.87068 -12.80363 -12.16160 -12.07738 -12.03201 -11.93550 -11.79315 -11.55265 -11.53861 -11.02552 -10.85803 -10.54869 -10.20919 -9.98337 -9.15587 -8.69787 -4.92329 0.34164 0.36480 0.67542 1.33430 1.50515 1.52863 1.63264 1.67243 1.99839 2.43293 2.71174 3.21940 3.25819 3.41854 3.43304 3.49970 3.57671 3.72991 3.80002 3.83828 3.85384 3.96854 4.01616 4.13166 4.15712 4.16093 4.26340 4.31947 4.40346 4.46563 4.53899 4.57137 4.58223 4.59443 4.62759 4.67164 4.71236 4.77046 4.78135 4.86568 5.00481 5.14512 5.22888 5.30284 5.33906 5.54049 5.75796 6.29419 6.38520 6.44834 7.06193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.254 6.254 3 C -0.085 4.085 4 H 0.106 0.894 5 C -0.123 4.123 6 C -0.121 4.121 7 H 0.101 0.899 8 C 0.130 3.870 9 N -0.728 5.728 10 C 0.519 3.481 11 O -0.538 6.538 12 C -0.141 4.141 13 C 0.074 3.926 14 O -0.316 6.316 15 C 0.138 3.862 16 C -0.151 4.151 17 C -0.053 4.053 18 C -0.157 4.157 19 C -0.069 4.069 20 O -0.531 6.531 21 Si 0.680 3.320 22 C -0.075 4.075 23 C -0.203 4.203 24 C -0.100 4.100 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.403 0.597 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.376 0.624 41 H -0.261 1.261 42 H -0.257 1.257 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.083 0.917 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.134 0.041 -2.538 5.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.025 6.025 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.163 4.163 6 C -0.142 4.142 7 H 0.120 0.880 8 C 0.006 3.994 9 N -0.380 5.380 10 C 0.305 3.695 11 O -0.414 6.414 12 C -0.181 4.181 13 C -0.002 4.002 14 O -0.230 6.230 15 C 0.092 3.908 16 C -0.169 4.169 17 C -0.071 4.071 18 C -0.158 4.158 19 C -0.179 4.179 20 O -0.337 6.337 21 Si 0.582 3.418 22 C -0.093 4.093 23 C -0.221 4.221 24 C -0.140 4.140 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.237 0.763 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.135 0.865 40 H 0.223 0.777 41 H -0.186 1.186 42 H -0.182 1.182 43 H 0.147 0.853 44 H 0.152 0.848 45 H 0.101 0.899 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.352 -1.366 -2.020 4.145 hybrid contribution -1.099 2.069 -0.984 2.541 sum -4.451 0.703 -3.003 5.415 Atomic orbital electron populations 1.23374 0.94091 1.06667 1.04937 1.87004 1.07604 1.10253 1.97623 1.24679 1.01051 0.94406 1.01198 0.87583 1.23419 0.98088 0.99119 0.95657 1.22768 0.95691 0.99000 0.96718 0.88047 1.21394 0.98186 0.88508 0.91289 1.45938 1.27815 1.30544 1.33691 1.20288 0.82616 0.85891 0.80690 1.90763 1.28911 1.51368 1.70388 1.21464 1.01152 0.98063 0.97450 1.22430 0.98556 0.87733 0.91486 1.85973 1.47009 1.47240 1.42788 1.18995 0.88501 0.94502 0.88775 1.20502 1.01869 0.97951 0.96626 1.20832 0.91974 0.98117 0.96222 1.20182 0.98391 0.97679 0.99502 1.24933 1.00365 0.92726 0.99851 1.86587 1.73760 1.31160 1.42241 0.95052 0.79655 0.86379 0.80717 1.20808 0.98280 0.96267 0.93917 1.21272 0.96192 1.02174 1.02484 1.22767 0.93395 0.97910 0.99895 0.90482 0.88036 0.90417 0.88392 0.90804 0.90903 0.90782 0.76254 0.87435 0.87501 0.90907 0.90773 0.84883 0.84900 0.86468 0.77686 1.18588 1.18231 0.85341 0.84777 0.89857 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.19 10.76 101.05 1.09 1.28 16 2 S -0.25 -0.13 22.18 -107.50 -2.38 -2.51 16 3 C -0.08 0.16 4.28 -25.91 -0.11 0.05 16 4 H 0.11 -0.27 8.14 -51.93 -0.42 -0.69 16 5 C -0.12 0.36 7.22 -25.92 -0.19 0.17 16 6 C -0.12 0.43 3.76 -89.80 -0.34 0.10 16 7 H 0.10 -0.47 8.14 -51.93 -0.42 -0.89 16 8 C 0.13 -0.25 5.51 -4.04 -0.02 -0.27 16 9 N -0.73 1.83 5.56 -60.30 -0.33 1.50 16 10 C 0.52 -0.06 7.83 -10.99 -0.09 -0.15 16 11 O -0.54 -2.19 15.98 5.56 0.09 -2.10 16 12 C -0.14 0.31 6.07 -27.89 -0.17 0.14 16 13 C 0.07 0.00 4.03 37.15 0.15 0.15 16 14 O -0.32 -0.44 10.14 -19.42 -0.20 -0.64 16 15 C 0.14 0.25 6.69 -39.22 -0.26 -0.01 16 16 C -0.15 -0.20 9.99 -39.43 -0.39 -0.60 16 17 C -0.05 -0.06 9.61 -39.60 -0.38 -0.44 16 18 C -0.16 -0.13 5.39 -104.60 -0.56 -0.70 16 19 C -0.07 -0.02 2.82 36.01 0.10 0.08 16 20 O -0.53 -0.91 12.76 -35.23 -0.45 -1.35 16 21 Si 0.68 -0.19 29.78 -169.99 -5.06 -5.25 16 22 C -0.08 -0.05 8.66 -39.61 -0.34 -0.39 16 23 C -0.20 -0.24 9.04 -39.43 -0.36 -0.59 16 24 C -0.10 0.24 7.23 -25.91 -0.19 0.06 16 25 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 26 H 0.10 -0.19 8.14 -51.92 -0.42 -0.61 16 27 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 28 H 0.10 -0.18 7.85 -51.93 -0.41 -0.58 16 29 H 0.07 -0.27 8.14 -51.93 -0.42 -0.69 16 30 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.07 -0.04 7.84 -51.93 -0.41 -0.45 16 32 H 0.40 -2.11 8.47 -40.82 -0.35 -2.45 16 33 H 0.11 -0.39 8.14 -51.93 -0.42 -0.82 16 34 H 0.11 -0.39 8.14 -51.93 -0.42 -0.81 16 35 H 0.07 0.03 7.62 -51.93 -0.40 -0.37 16 36 H 0.07 0.02 7.62 -51.93 -0.40 -0.38 16 37 H 0.13 0.02 8.06 -52.49 -0.42 -0.41 16 38 H 0.13 0.02 8.06 -52.49 -0.42 -0.41 16 39 H 0.12 -0.05 7.96 -51.93 -0.41 -0.47 16 40 H 0.38 -0.37 8.70 45.56 0.40 0.03 16 41 H -0.26 -0.47 7.11 56.52 0.40 -0.07 16 42 H -0.26 -0.76 7.11 56.52 0.40 -0.36 16 43 H 0.13 -0.13 4.87 -52.49 -0.26 -0.39 16 44 H 0.13 0.02 6.30 -52.49 -0.33 -0.31 16 45 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 46 H 0.10 -0.14 8.06 -51.93 -0.42 -0.56 16 LS Contribution 392.32 15.07 5.91 5.91 Total: 0.00 -7.84 392.32 -11.73 -19.58 By element: Atomic # 1 Polarization: -6.77 SS G_CDS: -7.25 Total: -14.02 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.06 Total: -1.12 kcal Atomic # 7 Polarization: 1.83 SS G_CDS: -0.33 Total: 1.50 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.56 Total: -4.09 kcal Atomic # 14 Polarization: -0.19 SS G_CDS: -5.06 Total: -5.25 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.38 Total: -2.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -7.84 -11.73 -19.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_4549602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.653 kcal (2) G-P(sol) polarization free energy of solvation -7.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds