Wall clock time and date at job start Tue Mar 9 2021 12:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81400 * 102.99682 * 2 1 4 4 H 1.09000 * 112.91114 * 316.24643 * 3 2 1 5 5 C 1.53785 * 113.61628 * 87.50278 * 3 2 1 6 6 C 1.53782 * 87.08339 * 139.98249 * 5 3 2 7 7 H 1.08998 * 113.69339 * 89.12626 * 6 5 3 8 8 C 1.52998 * 113.61617 * 220.02400 * 6 5 3 9 9 N 1.46501 * 109.46852 * 272.49521 * 8 6 5 10 10 C 1.34772 * 120.00326 * 179.97438 * 9 8 6 11 11 O 1.21281 * 120.00086 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00298 * 180.02562 * 10 9 8 13 13 C 1.52994 * 109.47158 * 180.02562 * 12 10 9 14 14 O 1.42900 * 109.47389 * 180.02562 * 13 12 10 15 15 C 1.35899 * 117.00511 * 180.02562 * 14 13 12 16 16 C 1.38726 * 120.05721 * 180.02562 * 15 14 13 17 17 C 1.38153 * 119.94564 * 180.02562 * 16 15 14 18 18 C 1.38269 * 120.05022 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.93900 * 179.97438 * 18 17 16 20 20 O 1.42896 * 109.47341 * 300.00123 * 19 18 17 21 21 Si 1.86300 * 109.46849 * 180.02562 * 19 18 17 22 22 C 1.38264 * 120.11486 * 0.25533 * 18 17 16 23 23 C 1.38143 * 120.05501 * 359.44957 * 22 18 17 24 24 C 1.53785 * 113.61401 * 185.00131 * 3 2 1 25 25 H 1.08997 * 109.47246 * 60.00365 * 1 2 3 26 26 H 1.09012 * 109.46694 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47344 * 299.99621 * 1 2 3 28 28 H 1.08991 * 113.61209 * 25.43103 * 5 3 2 29 29 H 1.08996 * 113.61467 * 254.53037 * 5 3 2 30 30 H 1.08990 * 109.47628 * 152.49290 * 8 6 5 31 31 H 1.09001 * 109.46992 * 32.49049 * 8 6 5 32 32 H 0.96999 * 119.99945 * 359.97438 * 9 8 6 33 33 H 1.08996 * 109.47386 * 60.00199 * 12 10 9 34 34 H 1.09001 * 109.46860 * 299.99825 * 12 10 9 35 35 H 1.09007 * 109.47542 * 59.99595 * 13 12 10 36 36 H 1.09003 * 109.47466 * 299.99915 * 13 12 10 37 37 H 1.07999 * 120.03394 * 359.97438 * 16 15 14 38 38 H 1.07995 * 119.97802 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.46989 * 60.00454 * 19 18 17 40 40 H 0.96693 * 114.00306 * 299.99773 * 20 19 18 41 41 H 1.48506 * 110.00048 * 58.68772 * 21 19 18 42 42 H 1.48502 * 109.99996 * 180.02562 * 21 19 18 43 43 H 1.08002 * 119.97450 * 179.70367 * 22 18 17 44 44 H 1.07999 * 120.02707 * 180.25811 * 23 22 18 45 45 H 1.09000 * 113.61351 * 105.47137 * 24 3 2 46 46 H 1.08998 * 113.69099 * 334.57706 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 1 1.6107 2.3441 -0.6943 5 6 2.3007 2.3816 1.4077 6 6 3.5204 3.1740 0.9084 7 1 3.2655 4.1353 0.4623 8 6 4.6477 3.2768 1.9376 9 7 4.4200 4.4415 2.7966 10 6 5.2912 4.7321 3.7829 11 8 6.2641 4.0298 3.9592 12 6 5.0566 5.9299 4.6669 13 6 6.1839 6.0328 5.6961 14 8 5.9612 7.1682 6.5347 15 6 6.8783 7.4051 7.5091 16 6 6.7239 8.4900 8.3598 17 6 7.6580 8.7289 9.3493 18 6 8.7463 7.8880 9.4917 19 6 9.7640 8.1513 10.5716 20 8 10.3468 9.4407 10.3727 21 14 11.0959 6.8507 10.4999 22 6 8.9055 6.8094 8.6414 23 6 7.9711 6.5627 7.6544 24 6 3.7282 2.0521 -0.1228 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 2.5393 1.6579 2.1870 29 1 1.4455 3.0090 1.6588 30 1 5.6016 3.3866 1.4220 31 1 4.6663 2.3736 2.5476 32 1 3.6421 5.0035 2.6554 33 1 4.1025 5.8198 5.1824 34 1 5.0380 6.8333 4.0572 35 1 7.1379 6.1431 5.1803 36 1 6.2030 5.1295 6.3058 37 1 5.8747 9.1478 8.2482 38 1 7.5385 9.5735 10.0115 39 1 9.2764 8.1192 11.5459 40 1 10.7989 9.5414 9.5240 41 1 11.7470 6.8634 9.1652 42 1 12.1056 7.0987 11.5603 43 1 9.7590 6.1567 8.7517 44 1 8.0937 5.7176 6.9931 45 1 4.0254 2.4135 -1.1073 46 1 4.3583 1.2390 0.2376 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_4549602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:49 Heat of formation + Delta-G solvation = -55.529463 kcal Electronic energy + Delta-G solvation = -25314.255649 eV Core-core repulsion = 21490.823956 eV Total energy + Delta-G solvation = -3823.431693 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.138 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.40760 -40.90431 -39.80355 -39.15810 -37.30498 -35.57420 -33.42468 -32.06568 -31.49772 -29.94070 -29.35030 -26.74041 -26.55761 -25.57522 -24.05810 -23.24947 -22.20893 -21.58579 -20.47905 -19.50582 -18.44310 -18.00566 -17.54204 -17.50382 -17.04068 -16.81039 -16.55562 -16.38023 -16.18002 -16.08981 -15.59993 -15.21616 -14.96946 -14.72977 -14.64667 -14.42268 -14.35270 -14.29761 -14.02725 -13.87578 -13.50856 -13.48612 -13.44543 -12.93460 -12.82744 -12.73193 -12.29435 -12.06435 -11.91053 -11.78684 -11.78214 -11.61188 -11.35911 -11.04190 -10.78288 -10.60888 -10.14620 -10.03878 -9.21991 -8.71829 -4.93484 0.27811 0.30547 0.77553 1.31502 1.53807 1.58332 1.63882 1.72500 1.93629 2.50295 2.65125 3.39490 3.42798 3.44727 3.57405 3.63338 3.72251 3.79310 3.82752 3.90276 3.91289 4.03960 4.17432 4.26301 4.30233 4.31246 4.34879 4.35195 4.45288 4.57141 4.61977 4.67164 4.70332 4.74918 4.76128 4.79358 4.83479 4.85864 4.97106 4.97812 5.04285 5.18039 5.28620 5.31550 5.46637 5.48877 5.72062 6.31960 6.47385 6.48704 7.17067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.321 6.321 3 C -0.074 4.074 4 H 0.118 0.882 5 C -0.118 4.118 6 C -0.103 4.103 7 H 0.124 0.876 8 C 0.132 3.868 9 N -0.713 5.713 10 C 0.517 3.483 11 O -0.587 6.587 12 C -0.132 4.132 13 C 0.072 3.928 14 O -0.321 6.321 15 C 0.123 3.877 16 C -0.158 4.158 17 C -0.059 4.059 18 C -0.159 4.159 19 C -0.074 4.074 20 O -0.548 6.548 21 Si 0.758 3.242 22 C -0.080 4.080 23 C -0.210 4.210 24 C -0.105 4.105 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.420 0.580 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.127 0.873 40 H 0.385 0.615 41 H -0.287 1.287 42 H -0.302 1.302 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.090 0.910 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.533 1.172 -2.870 7.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.093 6.093 3 C -0.202 4.202 4 H 0.136 0.864 5 C -0.157 4.157 6 C -0.123 4.123 7 H 0.142 0.858 8 C 0.008 3.992 9 N -0.365 5.365 10 C 0.304 3.696 11 O -0.467 6.467 12 C -0.171 4.171 13 C -0.004 4.004 14 O -0.234 6.234 15 C 0.078 3.922 16 C -0.177 4.177 17 C -0.077 4.077 18 C -0.160 4.160 19 C -0.183 4.183 20 O -0.356 6.356 21 Si 0.664 3.336 22 C -0.097 4.097 23 C -0.229 4.229 24 C -0.145 4.145 25 H 0.104 0.896 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.257 0.743 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.144 0.856 40 H 0.234 0.766 41 H -0.214 1.214 42 H -0.230 1.230 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.109 0.891 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.810 -0.220 -2.375 5.369 hybrid contribution -0.638 1.721 -0.895 2.042 sum -5.449 1.501 -3.270 6.529 Atomic orbital electron populations 1.23365 0.91670 1.07018 1.05743 1.87237 1.10496 1.13731 1.97793 1.24762 1.01233 0.92065 1.02174 0.86367 1.23352 0.98830 0.98888 0.94673 1.22677 0.94517 0.99507 0.95619 0.85811 1.21306 0.98467 0.88074 0.91386 1.45827 1.27803 1.30231 1.32646 1.20667 0.82060 0.85921 0.80938 1.90746 1.31041 1.53117 1.71801 1.21429 1.01057 0.97761 0.96865 1.22464 0.99229 0.87056 0.91617 1.85955 1.46996 1.47661 1.42835 1.19190 0.88900 0.94936 0.89194 1.20674 1.02307 0.98054 0.96629 1.20980 0.91984 0.98408 0.96316 1.20257 0.98433 0.97694 0.99583 1.25089 1.00560 0.92433 1.00210 1.86557 1.74024 1.31895 1.43160 0.94152 0.77278 0.85234 0.76953 1.20992 0.98604 0.96481 0.93667 1.21414 0.96283 1.02383 1.02783 1.22796 0.93058 0.97988 1.00608 0.89626 0.87987 0.89560 0.89848 0.89181 0.92045 0.92503 0.74292 0.85413 0.85483 0.91790 0.91523 0.83979 0.84160 0.85566 0.76566 1.21388 1.22976 0.83980 0.84307 0.89145 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.37 10.76 113.37 1.22 1.58 16 2 S -0.32 -0.59 22.18 -56.49 -1.25 -1.84 16 3 C -0.07 0.31 4.28 31.12 0.13 0.44 16 4 H 0.12 -0.77 8.14 -2.39 -0.02 -0.78 16 5 C -0.12 0.78 7.22 31.12 0.22 1.01 16 6 C -0.10 0.83 3.76 -10.26 -0.04 0.79 16 7 H 0.12 -1.47 8.14 -2.39 -0.02 -1.49 16 8 C 0.13 -0.47 5.51 86.38 0.48 0.00 16 9 N -0.71 4.12 5.56 -463.08 -2.57 1.55 16 10 C 0.52 -0.13 7.83 87.66 0.69 0.55 16 11 O -0.59 -5.55 15.98 -3.03 -0.05 -5.60 16 12 C -0.13 0.70 6.07 29.85 0.18 0.88 16 13 C 0.07 0.02 4.03 71.98 0.29 0.31 16 14 O -0.32 -0.89 10.14 -92.42 -0.94 -1.83 16 15 C 0.12 0.48 6.69 22.51 0.15 0.63 16 16 C -0.16 -0.42 9.99 22.37 0.22 -0.20 16 17 C -0.06 -0.12 9.61 22.26 0.21 0.10 16 18 C -0.16 -0.24 5.39 -19.85 -0.11 -0.35 16 19 C -0.07 -0.03 2.82 71.24 0.20 0.17 16 20 O -0.55 -1.83 12.76 -148.98 -1.90 -3.73 16 21 Si 0.76 -0.29 29.78 68.60 2.04 1.76 16 22 C -0.08 -0.11 8.66 22.25 0.19 0.09 16 23 C -0.21 -0.59 9.04 22.37 0.20 -0.39 16 24 C -0.11 0.50 7.23 31.13 0.23 0.72 16 25 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.10 -0.37 8.14 -2.38 -0.02 -0.39 16 27 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.08 -0.26 7.85 -2.39 -0.02 -0.28 16 29 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 30 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.06 0.02 7.84 -2.39 -0.02 0.00 16 32 H 0.42 -5.23 8.47 -92.71 -0.79 -6.01 16 33 H 0.13 -1.17 8.14 -2.39 -0.02 -1.19 16 34 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 35 H 0.06 0.12 7.62 -2.38 -0.02 0.10 16 36 H 0.07 0.10 7.62 -2.39 -0.02 0.08 16 37 H 0.14 0.01 8.06 -2.91 -0.02 -0.02 16 38 H 0.14 0.00 8.06 -2.91 -0.02 -0.03 16 39 H 0.13 -0.19 7.96 -2.39 -0.02 -0.20 16 40 H 0.39 -0.72 8.70 -74.06 -0.64 -1.36 16 41 H -0.29 -1.12 7.11 99.48 0.71 -0.41 16 42 H -0.30 -2.14 7.11 99.48 0.71 -1.43 16 43 H 0.14 -0.32 4.87 -2.91 -0.01 -0.33 16 44 H 0.14 0.17 6.30 -2.91 -0.02 0.15 16 45 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 46 H 0.08 -0.12 8.06 -2.39 -0.02 -0.14 16 Total: 0.00 -20.09 392.32 -0.60 -20.69 By element: Atomic # 1 Polarization: -16.93 SS G_CDS: -0.40 Total: -17.33 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 4.47 Total: 6.34 kcal Atomic # 7 Polarization: 4.12 SS G_CDS: -2.57 Total: 1.55 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -2.89 Total: -11.16 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: 2.04 Total: 1.76 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -1.25 Total: -1.84 kcal Total: -20.09 -0.60 -20.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_4549602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.843 kcal (2) G-P(sol) polarization free energy of solvation -20.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds