Wall clock time and date at job start Tue Mar 9 2021 12:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81394 * 102.99928 * 2 1 4 4 H 1.09003 * 112.91241 * 43.74753 * 3 2 1 5 5 C 1.53787 * 113.61654 * 174.99809 * 3 2 1 6 6 C 1.53781 * 87.07987 * 139.97949 * 5 3 2 7 7 H 1.09002 * 113.61228 * 89.11929 * 6 5 3 8 8 C 1.52995 * 113.61293 * 219.93573 * 6 5 3 9 9 N 1.46500 * 109.47108 * 183.47228 * 8 6 5 10 10 C 1.34783 * 120.00119 * 179.97438 * 9 8 6 11 11 O 1.21554 * 119.99656 * 0.02562 * 10 9 8 12 12 C 1.47843 * 120.00048 * 179.97438 * 10 9 8 13 13 C 1.39557 * 120.14323 * 179.72102 * 12 10 9 14 14 C 1.50700 * 120.07280 * 0.03265 * 13 12 10 15 15 O 1.42901 * 109.46946 * 179.97438 * 14 13 12 16 16 C 1.35902 * 116.99824 * 179.97438 * 15 14 13 17 17 C 1.38717 * 120.05409 * 180.02562 * 16 15 14 18 18 C 1.38166 * 119.94023 * 180.02562 * 17 16 15 19 19 C 1.50706 * 119.96922 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.47072 * 300.00021 * 19 18 17 21 21 Si 1.86298 * 109.47035 * 179.97438 * 19 18 17 22 22 C 1.38237 * 120.05968 * 359.97438 * 18 17 16 23 23 C 1.38286 * 120.11053 * 0.02670 * 22 18 17 24 24 C 1.38120 * 120.05817 * 359.67676 * 23 22 18 25 25 C 1.37979 * 119.84923 * 179.72473 * 13 12 10 26 26 C 1.38334 * 120.14710 * 0.58470 * 25 13 12 27 27 C 1.38377 * 120.28964 * 359.69385 * 26 25 13 28 28 C 1.37928 * 120.15032 * 0.02562 * 27 26 25 29 29 C 1.53779 * 113.61264 * 272.49689 * 3 2 1 30 30 H 1.09006 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46858 * 299.99818 * 1 2 3 32 32 H 1.08996 * 109.47209 * 60.00172 * 1 2 3 33 33 H 1.09005 * 113.61051 * 25.43353 * 5 3 2 34 34 H 1.08996 * 113.69311 * 254.53982 * 5 3 2 35 35 H 1.09005 * 109.47501 * 303.47224 * 8 6 5 36 36 H 1.09004 * 109.47494 * 63.47236 * 8 6 5 37 37 H 0.96997 * 120.00462 * 0.02562 * 9 8 6 38 38 H 1.08998 * 109.47576 * 299.99427 * 14 13 12 39 39 H 1.09003 * 109.47154 * 59.99673 * 14 13 12 40 40 H 1.08000 * 120.02645 * 359.97438 * 17 16 15 41 41 H 1.09001 * 109.47284 * 59.99644 * 19 18 17 42 42 H 0.96708 * 113.99892 * 299.99851 * 20 19 18 43 43 H 1.48503 * 109.99961 * 58.68337 * 21 19 18 44 44 H 1.48503 * 109.99813 * 179.97438 * 21 19 18 45 45 H 1.07999 * 119.94776 * 180.02562 * 22 18 17 46 46 H 1.08008 * 119.97249 * 179.97438 * 23 22 18 47 47 H 1.07997 * 120.03313 * 180.31963 * 24 23 22 48 48 H 1.08005 * 119.92156 * 180.29948 * 25 13 12 49 49 H 1.08003 * 119.85584 * 179.71848 * 26 25 13 50 50 H 1.08012 * 119.92624 * 180.02562 * 27 26 25 51 51 H 1.08007 * 120.08028 * 180.02562 * 28 27 26 52 52 H 1.09003 * 113.61775 * 105.47631 * 29 3 2 53 53 H 1.08996 * 113.61960 * 334.56357 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6108 2.3441 0.6943 5 6 3.7284 2.0520 0.1229 6 6 3.5206 3.1738 -0.9083 7 1 3.2643 4.1348 -0.4624 8 6 4.6489 3.2778 -1.9364 9 7 4.4018 4.4211 -2.8186 10 6 5.2711 4.7095 -3.8074 11 8 6.2597 4.0207 -3.9676 12 6 5.0214 5.8628 -4.6981 13 6 5.9224 6.1676 -5.7192 14 6 7.1532 5.3210 -5.9180 15 8 7.9099 5.8314 -7.0175 16 6 9.0592 5.1776 -7.3319 17 6 9.8432 5.6193 -8.3875 18 6 11.0108 4.9526 -8.7054 19 6 11.8634 5.4322 -9.8519 20 8 11.1024 5.3921 -11.0607 21 14 13.3556 4.3295 -10.0197 22 6 11.3983 3.8466 -7.9722 23 6 10.6184 3.4043 -6.9193 24 6 9.4534 4.0709 -6.5936 25 6 5.6806 7.2420 -6.5505 26 6 4.5542 8.0236 -6.3658 27 6 3.6598 7.7302 -5.3515 28 6 3.8867 6.6556 -4.5171 29 6 2.3008 2.3814 -1.4077 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.3573 1.2381 -0.2381 34 1 4.0270 2.4133 1.1069 35 1 5.5991 3.4158 -1.4204 36 1 4.6865 2.3634 -2.5285 37 1 3.6131 4.9709 -2.6906 38 1 7.7621 5.3471 -5.0143 39 1 6.8572 4.2930 -6.1271 40 1 9.5407 6.4830 -8.9610 41 1 12.1876 6.4551 -9.6605 42 1 10.7806 4.5104 -11.2938 43 1 12.9270 2.9263 -10.2491 44 1 14.2043 4.7916 -11.1474 45 1 12.3116 3.3270 -8.2219 46 1 10.9231 2.5397 -6.3481 47 1 8.8474 3.7283 -5.7680 48 1 6.3746 7.4761 -7.3442 49 1 4.3719 8.8662 -7.0164 50 1 2.7820 8.3441 -5.2128 51 1 3.1877 6.4274 -3.7260 52 1 1.4457 3.0090 -1.6589 53 1 2.5395 1.6578 -2.1870 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_4557126.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:15 Heat of formation + Delta-G solvation = -15.351076 kcal Electronic energy + Delta-G solvation = -33804.085568 eV Core-core repulsion = 29313.953959 eV Total energy + Delta-G solvation = -4490.131608 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.154 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.78139 -41.14194 -40.14593 -39.35764 -38.92566 -37.39433 -35.77640 -33.32543 -32.54241 -32.46770 -31.03268 -29.93671 -29.35033 -27.79541 -26.74012 -26.64923 -25.06909 -24.03560 -23.60983 -22.94754 -21.83618 -21.68756 -20.57512 -19.19236 -19.04935 -18.00553 -17.68742 -17.36409 -17.22262 -17.19877 -16.97963 -16.71242 -16.45803 -16.27596 -16.14113 -15.90705 -15.58055 -15.44761 -15.18302 -14.90053 -14.87902 -14.58242 -14.42849 -14.33239 -14.14102 -14.04428 -13.92879 -13.69896 -13.50665 -13.45477 -13.33571 -13.01693 -12.81425 -12.79998 -12.52711 -12.22177 -12.20918 -12.05235 -11.89819 -11.76754 -11.61765 -11.36636 -10.94206 -10.78059 -10.69327 -10.32088 -9.98844 -9.96634 -9.82051 -9.29741 -8.71968 -4.90950 -0.26656 0.16831 0.26105 0.36274 0.77240 1.28957 1.62054 1.63834 1.76396 1.90966 2.02559 2.04480 2.63028 2.73321 3.36562 3.38182 3.42701 3.52492 3.58981 3.63984 3.68437 3.76381 3.81118 3.84889 4.03294 4.08870 4.15088 4.18568 4.21360 4.23741 4.29871 4.30759 4.33735 4.35264 4.40579 4.45833 4.53915 4.60967 4.64417 4.71176 4.75141 4.75566 4.82649 4.85364 4.90691 4.94926 4.96010 5.03441 5.17964 5.23148 5.27370 5.33664 5.36289 5.40867 5.43098 5.44791 5.69590 5.82131 6.30948 6.41414 6.45305 7.07474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.320 6.320 3 C -0.073 4.073 4 H 0.119 0.881 5 C -0.104 4.104 6 C -0.104 4.104 7 H 0.124 0.876 8 C 0.133 3.867 9 N -0.707 5.707 10 C 0.553 3.447 11 O -0.572 6.572 12 C -0.147 4.147 13 C -0.054 4.054 14 C 0.118 3.882 15 O -0.327 6.327 16 C 0.116 3.884 17 C -0.140 4.140 18 C -0.081 4.081 19 C -0.087 4.087 20 O -0.548 6.548 21 Si 0.777 3.223 22 C -0.155 4.155 23 C -0.074 4.074 24 C -0.211 4.211 25 C -0.123 4.123 26 C -0.090 4.090 27 C -0.123 4.123 28 C -0.076 4.076 29 C -0.119 4.119 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.415 0.585 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.386 0.614 43 H -0.282 1.282 44 H -0.300 1.300 45 H 0.150 0.850 46 H 0.152 0.848 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.151 0.849 50 H 0.162 0.838 51 H 0.162 0.838 52 H 0.090 0.910 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.440 3.009 5.212 8.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.092 6.092 3 C -0.201 4.201 4 H 0.137 0.863 5 C -0.143 4.143 6 C -0.124 4.124 7 H 0.142 0.858 8 C 0.009 3.991 9 N -0.359 5.359 10 C 0.341 3.659 11 O -0.454 6.454 12 C -0.150 4.150 13 C -0.055 4.055 14 C 0.044 3.956 15 O -0.242 6.242 16 C 0.071 3.929 17 C -0.159 4.159 18 C -0.082 4.082 19 C -0.195 4.195 20 O -0.356 6.356 21 Si 0.682 3.318 22 C -0.172 4.172 23 C -0.092 4.092 24 C -0.229 4.229 25 C -0.141 4.141 26 C -0.108 4.108 27 C -0.141 4.141 28 C -0.095 4.095 29 C -0.159 4.159 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.254 0.746 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.235 0.765 43 H -0.208 1.208 44 H -0.228 1.228 45 H 0.167 0.833 46 H 0.170 0.830 47 H 0.150 0.850 48 H 0.149 0.851 49 H 0.169 0.831 50 H 0.180 0.820 51 H 0.179 0.821 52 H 0.109 0.891 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.661 1.837 4.586 6.149 hybrid contribution -2.142 0.476 -0.497 2.250 sum -5.803 2.314 4.089 7.466 Atomic orbital electron populations 1.23365 0.91690 1.07002 1.05742 1.87240 1.10473 1.13721 1.97788 1.24753 1.01258 0.92067 1.02068 0.86276 1.22783 0.93061 0.97872 1.00573 1.22686 0.94477 0.99617 0.95646 0.85771 1.21350 0.98650 0.88196 0.90855 1.45738 1.26615 1.31962 1.31622 1.18485 0.82639 0.83999 0.80742 1.90744 1.29684 1.52564 1.72372 1.19671 0.98365 0.98593 0.98400 1.19724 0.94302 0.96153 0.95336 1.21499 0.90131 0.96287 0.87711 1.85932 1.33261 1.54437 1.50560 1.19171 0.86398 0.92290 0.95052 1.20305 0.95394 1.02618 0.97544 1.20182 0.95132 0.95458 0.97398 1.25374 1.01324 1.10470 0.82355 1.86568 1.72171 1.35920 1.40953 0.93885 0.76824 0.74790 0.86328 1.21167 1.01210 0.97414 0.97456 1.21230 0.92729 0.99128 0.96144 1.21547 1.00725 0.97858 1.02807 1.21113 0.98796 0.94694 0.99494 1.21765 0.92790 0.98801 0.97481 1.21576 1.00469 0.97428 0.94580 1.21592 0.94855 0.93666 0.99343 1.23357 0.98822 0.98922 0.94754 0.88016 0.89578 0.89603 0.90013 0.89013 0.91664 0.92315 0.74636 0.90464 0.90725 0.85447 0.85638 0.76473 1.20806 1.22830 0.83252 0.83004 0.85050 0.85053 0.83133 0.82013 0.82078 0.89140 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.36 10.76 113.37 1.22 1.58 16 2 S -0.32 -0.59 22.17 -56.49 -1.25 -1.84 16 3 C -0.07 0.31 4.28 31.12 0.13 0.44 16 4 H 0.12 -0.79 8.14 -2.39 -0.02 -0.81 16 5 C -0.10 0.50 7.23 31.12 0.23 0.72 16 6 C -0.10 0.81 3.75 -10.27 -0.04 0.77 16 7 H 0.12 -1.45 8.14 -2.39 -0.02 -1.47 16 8 C 0.13 -0.38 5.50 86.38 0.48 0.09 16 9 N -0.71 2.36 5.51 -465.96 -2.57 -0.20 16 10 C 0.55 2.17 7.75 86.78 0.67 2.84 16 11 O -0.57 -6.23 13.41 -3.88 -0.05 -6.28 16 12 C -0.15 -0.34 5.87 -20.09 -0.12 -0.46 16 13 C -0.05 -0.32 5.91 -19.61 -0.12 -0.44 16 14 C 0.12 1.01 3.38 71.24 0.24 1.25 16 15 O -0.33 -3.24 8.62 -92.45 -0.80 -4.04 16 16 C 0.12 1.06 6.69 22.51 0.15 1.21 16 17 C -0.14 -1.07 9.55 22.37 0.21 -0.85 16 18 C -0.08 -0.33 5.39 -19.88 -0.11 -0.43 16 19 C -0.09 -0.17 2.82 71.24 0.20 0.03 16 20 O -0.55 -2.83 12.77 -148.98 -1.90 -4.73 16 21 Si 0.78 -0.51 29.79 68.60 2.04 1.53 16 22 C -0.15 -0.29 8.67 22.28 0.19 -0.10 16 23 C -0.07 -0.23 10.04 22.25 0.22 -0.01 16 24 C -0.21 -1.49 9.04 22.37 0.20 -1.29 16 25 C -0.12 -0.44 9.37 22.23 0.21 -0.23 16 26 C -0.09 0.16 10.04 22.33 0.22 0.38 16 27 C -0.12 0.61 10.03 22.23 0.22 0.84 16 28 C -0.08 0.33 9.54 22.53 0.21 0.55 16 29 C -0.12 0.76 7.22 31.12 0.22 0.99 16 30 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H 0.08 -0.13 8.06 -2.38 -0.02 -0.15 16 34 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.07 -0.04 8.14 -2.38 -0.02 -0.06 16 36 H 0.06 0.05 7.88 -2.39 -0.02 0.03 16 37 H 0.42 -4.10 6.51 -92.71 -0.60 -4.70 16 38 H 0.08 0.77 6.86 -2.39 -0.02 0.76 16 39 H 0.07 0.78 6.87 -2.39 -0.02 0.76 16 40 H 0.13 1.00 8.06 -2.91 -0.02 0.97 16 41 H 0.13 0.05 7.96 -2.39 -0.02 0.03 16 42 H 0.39 -0.13 8.70 -74.05 -0.64 -0.78 16 43 H -0.28 -0.84 7.11 99.48 0.71 -0.13 16 44 H -0.30 -1.98 7.11 99.48 0.71 -1.27 16 45 H 0.15 -0.46 4.87 -2.91 -0.01 -0.48 16 46 H 0.15 -0.29 8.06 -2.91 -0.02 -0.31 16 47 H 0.13 0.96 6.30 -2.91 -0.02 0.94 16 48 H 0.13 0.60 7.00 -2.91 -0.02 0.57 16 49 H 0.15 -0.93 8.06 -2.91 -0.02 -0.95 16 50 H 0.16 -1.77 8.06 -2.90 -0.02 -1.79 16 51 H 0.16 -1.92 6.41 -2.91 -0.02 -1.94 16 52 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 53 H 0.08 -0.22 7.88 -2.39 -0.02 -0.24 16 Total: 0.00 -21.50 441.97 0.08 -21.43 By element: Atomic # 1 Polarization: -13.49 SS G_CDS: -0.26 Total: -13.75 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 4.87 Total: 7.89 kcal Atomic # 7 Polarization: 2.36 SS G_CDS: -2.57 Total: -0.20 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -2.75 Total: -15.05 kcal Atomic # 14 Polarization: -0.51 SS G_CDS: 2.04 Total: 1.53 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -1.25 Total: -1.84 kcal Total: -21.50 0.08 -21.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_4557126.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.074 kcal (2) G-P(sol) polarization free energy of solvation -21.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds