Wall clock time and date at job start Tue Mar 9 2021 12:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81400 * 103.00022 * 2 1 4 4 H 1.09003 * 112.84953 * 43.80560 * 3 2 1 5 5 C 1.53777 * 113.61703 * 175.00038 * 3 2 1 6 6 C 1.53777 * 87.08361 * 139.98429 * 5 3 2 7 7 H 1.08992 * 113.61984 * 89.20096 * 6 5 3 8 8 C 1.53005 * 113.61610 * 220.02272 * 6 5 3 9 9 N 1.46493 * 109.47193 * 184.99687 * 8 6 5 10 10 C 1.34780 * 120.00089 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99570 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00221 * 179.97438 * 10 9 8 13 13 O 1.42901 * 109.47076 * 180.02562 * 12 10 9 14 14 C 1.35898 * 117.00043 * 180.02562 * 13 12 10 15 15 C 1.38707 * 120.05730 * 179.97438 * 14 13 12 16 16 C 1.38172 * 119.94461 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.97101 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.46949 * 64.98112 * 17 16 15 19 19 Si 1.86300 * 109.47178 * 184.97899 * 17 16 15 20 20 C 1.38241 * 120.05236 * 359.97438 * 16 15 14 21 21 C 1.38288 * 120.11556 * 359.97438 * 20 16 15 22 22 C 1.38119 * 120.05366 * 0.28328 * 21 20 16 23 23 C 1.53776 * 113.61758 * 272.49848 * 3 2 1 24 24 H 1.09005 * 109.46954 * 299.99858 * 1 2 3 25 25 H 1.08997 * 109.47523 * 59.99623 * 1 2 3 26 26 H 1.09001 * 109.46912 * 180.02562 * 1 2 3 27 27 H 1.09000 * 113.61294 * 25.43203 * 5 3 2 28 28 H 1.09005 * 113.69266 * 254.54162 * 5 3 2 29 29 H 1.08996 * 109.46991 * 64.99221 * 8 6 5 30 30 H 1.09004 * 109.46773 * 305.00048 * 8 6 5 31 31 H 0.97000 * 120.00391 * 359.97438 * 9 8 6 32 32 H 1.09004 * 109.46626 * 60.00490 * 12 10 9 33 33 H 1.08999 * 109.47060 * 300.00503 * 12 10 9 34 34 H 1.07998 * 120.02706 * 359.96025 * 15 14 13 35 35 H 1.09000 * 109.47732 * 304.98426 * 17 16 15 36 36 H 0.96708 * 114.00200 * 179.97438 * 18 17 16 37 37 H 1.48503 * 109.99935 * 300.00300 * 19 17 16 38 38 H 1.48502 * 109.99801 * 61.31764 * 19 17 16 39 39 H 1.08006 * 119.93966 * 180.02562 * 20 16 15 40 40 H 1.08002 * 119.96980 * 179.97438 * 21 20 16 41 41 H 1.07998 * 120.02956 * 179.72220 * 22 21 20 42 42 H 1.09006 * 113.61806 * 105.46899 * 23 3 2 43 43 H 1.09000 * 113.61306 * 334.56947 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7282 2.0520 0.1228 6 6 3.5205 3.1739 -0.9083 7 1 3.2657 4.1352 -0.4623 8 6 4.6478 3.2767 -1.9377 9 7 4.4200 4.4414 -2.7966 10 6 5.2918 4.7326 -3.7823 11 8 6.2646 4.0300 -3.9586 12 6 5.0572 5.9303 -4.6663 13 8 6.1101 6.0264 -5.6276 14 6 6.0497 7.0602 -6.5077 15 6 7.0391 7.2142 -7.4675 16 6 6.9750 8.2658 -8.3615 17 6 8.0493 8.4334 -9.4049 18 8 8.0123 7.3271 -10.3086 19 14 7.7591 10.0144 -10.3467 20 6 5.9257 9.1637 -8.3001 21 6 4.9375 9.0117 -7.3448 22 6 4.9998 7.9652 -6.4455 23 6 2.3008 2.3816 -1.4076 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.3571 1.2382 -0.2381 28 1 4.0270 2.4133 1.1069 29 1 4.6664 2.3735 -2.5475 30 1 5.6018 3.3865 -1.4219 31 1 3.6418 5.0030 -2.6559 32 1 5.0380 6.8336 -4.0565 33 1 4.1035 5.8199 -5.1823 34 1 7.8589 6.5129 -7.5160 35 1 9.0244 8.4734 -8.9195 36 1 8.6779 7.3687 -11.0089 37 1 6.4328 9.9723 -11.0134 38 1 7.8267 11.1754 -9.4232 39 1 5.8772 9.9848 -9.0000 40 1 4.1189 9.7148 -7.2987 41 1 4.2302 7.8495 -5.6967 42 1 1.4455 3.0091 -1.6588 43 1 2.5393 1.6579 -2.1870 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:19 Heat of formation + Delta-G solvation = -45.819966 kcal Electronic energy + Delta-G solvation = -23813.723976 eV Core-core repulsion = 20146.250937 eV Total energy + Delta-G solvation = -3667.473039 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65567 -40.82372 -39.82678 -38.89759 -37.31519 -35.67114 -32.70392 -31.97273 -30.53034 -29.81997 -28.30665 -26.80763 -26.72065 -24.14293 -23.81943 -22.53391 -21.69289 -20.54878 -19.21379 -18.56422 -18.42365 -17.70543 -17.55609 -17.39231 -17.13665 -16.74138 -16.39636 -15.96252 -15.87042 -15.40666 -15.17670 -14.83134 -14.76822 -14.63316 -14.35832 -14.27539 -14.05895 -13.84773 -13.67581 -13.52829 -13.47633 -13.26219 -12.84144 -12.44926 -12.28203 -12.16427 -11.93889 -11.87049 -11.79458 -11.38431 -11.06521 -10.79806 -10.39827 -10.25389 -10.01428 -9.43105 -8.73395 -4.93014 0.06419 0.22281 0.75895 1.25235 1.38598 1.44337 1.63241 1.65608 1.95946 2.48913 2.52878 3.32880 3.39215 3.41091 3.52687 3.62111 3.73412 3.77388 3.80091 3.85710 3.96269 4.02030 4.12510 4.15253 4.18736 4.29018 4.29983 4.32235 4.38525 4.55560 4.59021 4.72000 4.73871 4.80210 4.84277 4.84404 4.94597 5.01271 5.07509 5.18478 5.22711 5.29152 5.41690 5.52681 6.16833 6.40828 6.87170 7.07428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.323 6.323 3 C -0.073 4.073 4 H 0.120 0.880 5 C -0.106 4.106 6 C -0.101 4.101 7 H 0.128 0.872 8 C 0.132 3.868 9 N -0.705 5.705 10 C 0.511 3.489 11 O -0.576 6.576 12 C 0.036 3.964 13 O -0.319 6.319 14 C 0.120 3.880 15 C -0.145 4.145 16 C -0.052 4.052 17 C -0.091 4.091 18 O -0.566 6.566 19 Si 0.788 3.212 20 C -0.181 4.181 21 C -0.072 4.072 22 C -0.201 4.201 23 C -0.119 4.119 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.422 0.578 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.404 0.596 37 H -0.292 1.292 38 H -0.285 1.285 39 H 0.122 0.878 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.092 0.908 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 6.346 1.359 8.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.095 6.095 3 C -0.201 4.201 4 H 0.138 0.862 5 C -0.145 4.145 6 C -0.122 4.122 7 H 0.146 0.854 8 C 0.009 3.991 9 N -0.359 5.359 10 C 0.297 3.703 11 O -0.454 6.454 12 C -0.041 4.041 13 O -0.232 6.232 14 C 0.075 3.925 15 C -0.164 4.164 16 C -0.052 4.052 17 C -0.200 4.200 18 O -0.376 6.376 19 Si 0.693 3.307 20 C -0.198 4.198 21 C -0.089 4.089 22 C -0.219 4.219 23 C -0.158 4.158 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.261 0.739 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.107 0.893 36 H 0.255 0.745 37 H -0.220 1.220 38 H -0.212 1.212 39 H 0.140 0.860 40 H 0.177 0.823 41 H 0.186 0.814 42 H 0.111 0.889 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.490 5.269 1.587 7.102 hybrid contribution -1.207 0.454 0.664 1.450 sum -5.697 5.722 2.251 8.383 Atomic orbital electron populations 1.23364 0.91597 1.07015 1.05771 1.87270 1.10571 1.13835 1.97794 1.24753 1.01183 0.92025 1.02145 0.86161 1.22798 0.93126 0.97934 1.00647 1.22682 0.94287 0.99729 0.95453 0.85392 1.21346 0.98790 0.87700 0.91308 1.45628 1.27492 1.30515 1.32294 1.20534 0.82613 0.85906 0.81289 1.90775 1.31036 1.52452 1.71157 1.22775 0.91875 0.98400 0.91097 1.86131 1.48056 1.45897 1.43131 1.19179 0.95380 0.87812 0.90131 1.20350 1.00148 0.99932 0.95970 1.19490 0.95791 0.94537 0.95430 1.25054 0.99256 1.01583 0.94087 1.86454 1.61712 1.45199 1.44202 0.94211 0.82566 0.71838 0.82109 1.21052 0.96231 1.00700 1.01845 1.21255 0.97949 0.97107 0.92616 1.21622 0.99727 0.96738 1.03814 1.23362 0.98855 0.98912 0.94692 0.89549 0.89556 0.88022 0.90199 0.88969 0.92609 0.91965 0.73943 0.85369 0.85691 0.85872 0.89263 0.74512 1.21970 1.21185 0.86026 0.82278 0.81445 0.88938 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.33 10.76 113.37 1.22 1.55 16 2 S -0.32 -0.76 22.17 -56.49 -1.25 -2.01 16 3 C -0.07 0.29 4.28 31.12 0.13 0.42 16 4 H 0.12 -0.79 8.14 -2.39 -0.02 -0.81 16 5 C -0.11 0.45 7.23 31.12 0.22 0.68 16 6 C -0.10 0.79 3.76 -10.27 -0.04 0.75 16 7 H 0.13 -1.57 8.14 -2.39 -0.02 -1.59 16 8 C 0.13 -0.30 5.51 86.38 0.48 0.18 16 9 N -0.70 3.20 5.56 -463.06 -2.57 0.63 16 10 C 0.51 1.86 7.91 87.66 0.69 2.55 16 11 O -0.58 -9.30 16.50 16.00 0.26 -9.04 16 12 C 0.04 -0.07 5.22 71.24 0.37 0.30 16 13 O -0.32 -2.72 9.67 -73.36 -0.71 -3.43 16 14 C 0.12 0.85 6.69 22.51 0.15 1.00 16 15 C -0.15 -1.42 9.62 22.37 0.22 -1.20 16 16 C -0.05 -0.40 5.38 -19.88 -0.11 -0.50 16 17 C -0.09 -0.21 2.79 71.23 0.20 -0.01 16 18 O -0.57 -1.72 12.81 -148.98 -1.91 -3.63 16 19 Si 0.79 -1.03 29.85 68.60 2.05 1.02 16 20 C -0.18 -1.00 8.67 22.28 0.19 -0.81 16 21 C -0.07 -0.09 10.04 22.25 0.22 0.13 16 22 C -0.20 -0.13 9.04 22.37 0.20 0.07 16 23 C -0.12 0.75 7.22 31.12 0.22 0.98 16 24 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 25 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H 0.08 -0.05 8.06 -2.39 -0.02 -0.07 16 28 H 0.09 -0.54 8.14 -2.38 -0.02 -0.56 16 29 H 0.06 0.12 7.84 -2.39 -0.02 0.10 16 30 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 31 H 0.42 -5.42 8.47 -92.71 -0.79 -6.21 16 32 H 0.13 -1.15 7.65 -2.38 -0.02 -1.17 16 33 H 0.13 -1.04 7.67 -2.39 -0.02 -1.06 16 34 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.09 -0.09 7.96 -2.39 -0.02 -0.11 16 36 H 0.40 -3.25 8.74 -74.05 -0.65 -3.89 16 37 H -0.29 -1.58 7.05 99.48 0.70 -0.88 16 38 H -0.28 -0.99 7.11 99.48 0.71 -0.28 16 39 H 0.12 0.52 4.86 -2.91 -0.01 0.51 16 40 H 0.16 -0.79 8.06 -2.91 -0.02 -0.81 16 41 H 0.17 -1.28 6.30 -2.91 -0.02 -1.30 16 42 H 0.09 -0.89 8.14 -2.38 -0.02 -0.91 16 43 H 0.08 -0.19 7.85 -2.39 -0.02 -0.21 16 Total: 0.00 -29.36 371.48 -0.12 -29.48 By element: Atomic # 1 Polarization: -18.73 SS G_CDS: -0.37 Total: -19.11 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 4.38 Total: 6.08 kcal Atomic # 7 Polarization: 3.20 SS G_CDS: -2.57 Total: 0.63 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -2.35 Total: -16.09 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: 2.05 Total: 1.02 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -1.25 Total: -2.01 kcal Total: -29.36 -0.12 -29.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.338 kcal (2) G-P(sol) polarization free energy of solvation -29.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds