Wall clock time and date at job start Tue Mar 9 2021 12:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81399 * 103.00363 * 2 1 4 4 H 1.09002 * 112.84936 * 43.79906 * 3 2 1 5 5 C 1.53773 * 113.61804 * 174.99694 * 3 2 1 6 6 C 1.53782 * 87.08228 * 140.06483 * 5 3 2 7 7 H 1.08999 * 113.61867 * 89.20194 * 6 5 3 8 8 C 1.53000 * 113.61641 * 220.01962 * 6 5 3 9 9 N 1.46505 * 109.47056 * 184.99680 * 8 6 5 10 10 C 1.34776 * 119.99793 * 180.02562 * 9 8 6 11 11 O 1.21287 * 120.00349 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99994 * 180.02562 * 10 9 8 13 13 N 1.46902 * 109.46941 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00162 * 66.04703 * 13 12 10 15 15 C 1.39680 * 110.99776 * 189.99682 * 13 12 10 16 16 C 1.38893 * 120.07440 * 119.99910 * 15 13 12 17 17 C 1.50702 * 120.03534 * 0.25616 * 16 15 13 18 18 O 1.42894 * 109.47091 * 74.72098 * 17 16 15 19 19 Si 1.86297 * 109.46754 * 194.72373 * 17 16 15 20 20 C 1.38125 * 119.92196 * 179.97438 * 16 15 13 21 21 C 1.38260 * 120.07750 * 0.02562 * 20 16 15 22 22 C 1.50701 * 119.92476 * 179.97438 * 21 20 16 23 23 F 1.39897 * 109.46754 * 90.00305 * 22 21 20 24 24 F 1.39901 * 109.46926 * 209.99818 * 22 21 20 25 25 F 1.39903 * 109.47248 * 330.00181 * 22 21 20 26 26 C 1.38307 * 120.14994 * 0.02562 * 21 20 16 27 27 C 1.38087 * 120.07543 * 359.97438 * 26 21 20 28 28 C 1.53779 * 113.68935 * 272.53911 * 3 2 1 29 29 H 1.09004 * 109.47260 * 60.00317 * 1 2 3 30 30 H 1.09000 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47334 * 300.00215 * 1 2 3 32 32 H 1.08999 * 113.61283 * 25.52225 * 5 3 2 33 33 H 1.08994 * 113.69644 * 254.62229 * 5 3 2 34 34 H 1.09002 * 109.46913 * 64.99937 * 8 6 5 35 35 H 1.08999 * 109.47575 * 304.99857 * 8 6 5 36 36 H 0.96993 * 120.00127 * 0.02562 * 9 8 6 37 37 H 1.09002 * 109.47346 * 59.99726 * 12 10 9 38 38 H 1.09000 * 109.46599 * 299.99437 * 12 10 9 39 39 H 1.09000 * 109.46868 * 183.95273 * 14 13 12 40 40 H 1.09004 * 109.46565 * 303.94905 * 14 13 12 41 41 H 1.08994 * 109.46903 * 63.95192 * 14 13 12 42 42 H 1.09003 * 109.46908 * 314.72317 * 17 16 15 43 43 H 0.96695 * 114.00312 * 300.00077 * 18 17 16 44 44 H 1.48499 * 110.00019 * 298.68132 * 19 17 16 45 45 H 1.48503 * 110.00504 * 59.99986 * 19 17 16 46 46 H 1.07995 * 119.95706 * 180.02562 * 20 16 15 47 47 H 1.08001 * 119.96376 * 180.02562 * 26 21 20 48 48 H 1.08001 * 120.03643 * 179.97438 * 27 26 21 49 49 H 1.08994 * 113.61915 * 105.45616 * 28 3 2 50 50 H 1.09004 * 113.61404 * 334.54690 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 0.6952 5 6 3.7283 2.0519 0.1229 6 6 3.5202 3.1752 -0.9067 7 1 3.2654 4.1359 -0.4593 8 6 4.6473 3.2796 -1.9361 9 7 4.4192 4.4455 -2.7934 10 6 5.2902 4.7375 -3.7796 11 8 6.2626 4.0348 -3.9576 12 6 5.0559 5.9371 -4.6611 13 7 6.1380 6.0372 -5.6495 14 6 6.1036 4.9045 -6.5844 15 6 6.0795 7.2532 -6.3343 16 6 7.1501 8.1363 -6.2773 17 6 8.3793 7.7811 -5.4811 18 8 9.1379 6.7986 -6.1889 19 14 9.4189 9.3066 -5.2305 20 6 7.0891 9.3377 -6.9561 21 6 5.9639 9.6619 -7.6911 22 6 5.9008 10.9739 -8.4299 23 9 6.4106 10.8065 -9.7219 24 9 4.5714 11.4032 -8.5052 25 9 6.6617 11.9299 -7.7485 26 6 4.8956 8.7854 -7.7491 27 6 4.9499 7.5826 -7.0729 28 6 2.3003 2.3835 -1.4068 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.3572 1.2387 -0.2394 33 1 4.0272 2.4119 1.1073 34 1 4.6658 2.3772 -2.5473 35 1 5.6014 3.3888 -1.4205 36 1 3.6413 5.0072 -2.6513 37 1 5.0381 6.8394 -4.0497 38 1 4.1015 5.8284 -5.1763 39 1 6.9559 4.9659 -7.2610 40 1 6.1504 3.9702 -6.0249 41 1 5.1790 4.9371 -7.1606 42 1 8.0813 7.3812 -4.5118 43 1 8.6580 5.9757 -6.3551 44 1 9.8580 9.8434 -6.5436 45 1 8.6413 10.3362 -4.4953 46 1 7.9214 10.0245 -6.9126 47 1 4.0183 9.0415 -8.3245 48 1 4.1152 6.8988 -7.1183 49 1 1.4451 3.0112 -1.6569 50 1 2.5389 1.6609 -2.1873 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_6406254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:35 Heat of formation + Delta-G solvation = -145.101339 kcal Electronic energy + Delta-G solvation = -36284.045425 eV Core-core repulsion = 30990.548720 eV Total energy + Delta-G solvation = -5293.496705 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.137 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -51.19673 -48.71825 -48.64710 -41.91773 -40.89620 -39.91526 -37.81760 -37.49903 -35.56769 -33.09692 -32.31399 -30.73457 -29.96651 -28.60251 -27.65686 -26.94255 -26.93424 -25.26038 -24.20683 -23.37871 -22.12362 -21.71335 -20.67245 -19.59558 -19.51413 -19.45731 -18.62970 -18.22162 -18.06379 -17.40002 -17.07707 -16.98113 -16.79447 -16.61346 -16.29472 -15.81100 -15.65482 -15.56550 -15.45821 -15.30506 -15.25961 -15.07825 -14.99262 -14.86042 -14.80278 -14.74014 -14.68492 -14.35244 -14.23640 -14.12428 -13.92380 -13.69147 -13.67399 -13.63536 -13.33422 -13.19090 -13.03808 -12.83961 -12.62968 -12.12686 -12.09539 -11.94608 -11.56682 -11.37333 -10.98655 -10.96068 -10.85872 -10.39729 -10.21807 -10.18306 -9.85104 -8.71780 -4.82508 -0.49937 -0.14048 0.65557 1.38281 1.50533 1.51356 1.54842 1.65370 1.76602 1.95654 2.04190 2.50225 2.63521 2.89101 3.19043 3.23089 3.33783 3.38519 3.39916 3.47452 3.55377 3.55952 3.76620 3.81388 3.85295 3.96191 3.98016 4.01420 4.07130 4.10873 4.13619 4.14219 4.26867 4.31843 4.39945 4.45139 4.49561 4.52571 4.56836 4.65567 4.69161 4.75415 4.78827 4.82791 4.84758 4.89343 5.00639 5.13543 5.21333 5.30774 5.37742 5.90632 6.31991 6.67119 7.10374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.253 6.253 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.100 4.100 6 C -0.121 4.121 7 H 0.101 0.899 8 C 0.133 3.867 9 N -0.731 5.731 10 C 0.515 3.485 11 O -0.515 6.515 12 C 0.037 3.963 13 N -0.491 5.491 14 C 0.017 3.983 15 C 0.129 3.871 16 C -0.085 4.085 17 C -0.068 4.068 18 O -0.532 6.532 19 Si 0.736 3.264 20 C -0.067 4.067 21 C -0.177 4.177 22 C 0.508 3.492 23 F -0.173 7.173 24 F -0.174 7.174 25 F -0.176 7.176 26 C -0.056 4.056 27 C -0.145 4.145 28 C -0.123 4.123 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.400 0.600 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.032 0.968 42 H 0.084 0.916 43 H 0.368 0.632 44 H -0.250 1.250 45 H -0.246 1.246 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.137 0.863 49 H 0.072 0.928 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 -0.920 3.867 6.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.024 6.024 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.139 4.139 6 C -0.141 4.141 7 H 0.119 0.881 8 C 0.009 3.991 9 N -0.384 5.384 10 C 0.300 3.700 11 O -0.389 6.389 12 C -0.093 4.093 13 N -0.212 5.212 14 C -0.128 4.128 15 C 0.035 3.965 16 C -0.087 4.087 17 C -0.177 4.177 18 O -0.338 6.338 19 Si 0.635 3.365 20 C -0.085 4.085 21 C -0.178 4.178 22 C 0.454 3.546 23 F -0.154 7.154 24 F -0.155 7.155 25 F -0.157 7.157 26 C -0.074 4.074 27 C -0.165 4.165 28 C -0.163 4.163 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.234 0.766 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.051 0.949 42 H 0.102 0.898 43 H 0.217 0.783 44 H -0.175 1.175 45 H -0.171 1.171 46 H 0.156 0.844 47 H 0.160 0.840 48 H 0.155 0.845 49 H 0.091 0.909 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.929 -1.075 3.867 4.969 hybrid contribution -3.765 0.800 -0.987 3.974 sum -6.694 -0.275 2.880 7.292 Atomic orbital electron populations 1.23373 0.94131 1.06668 1.04917 1.87010 1.07556 1.10254 1.97618 1.24674 1.01094 0.94396 1.01165 0.87620 1.22760 0.93348 0.97891 0.99939 1.22764 0.95672 0.98957 0.96744 0.88097 1.21364 0.98173 0.88335 0.91239 1.45948 1.27815 1.30587 1.34037 1.20302 0.82822 0.86022 0.80885 1.90732 1.28158 1.50580 1.69451 1.22074 0.93667 0.98656 0.94899 1.59263 1.45667 1.00539 1.15775 1.22743 1.01154 0.93785 0.95153 1.18817 0.92708 0.91109 0.93853 1.20298 0.96789 0.92988 0.98581 1.25145 0.94280 1.02441 0.95842 1.86703 1.41379 1.27503 1.78173 0.92932 0.87227 0.72404 0.83962 1.20814 0.96725 0.96531 0.94404 1.19974 0.98374 0.95322 1.04129 1.18240 0.73881 0.84868 0.77607 1.93255 1.87072 1.95539 1.39520 1.93209 1.34948 1.91089 1.96288 1.93212 1.76084 1.66737 1.79672 1.20870 0.97118 0.92531 0.96916 1.21692 0.99103 0.97343 0.98400 1.23414 0.98080 0.99092 0.95677 0.90453 0.88033 0.90482 0.88576 0.89832 0.90895 0.90859 0.76567 0.87396 0.90937 0.90521 0.88192 0.94917 0.89786 0.78328 1.17515 1.17077 0.84382 0.84045 0.84517 0.90905 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.22 10.76 101.05 1.09 1.30 16 2 S -0.25 -0.06 22.18 -107.50 -2.38 -2.45 16 3 C -0.08 0.19 4.27 -25.92 -0.11 0.08 16 4 H 0.11 -0.29 8.14 -51.93 -0.42 -0.71 16 5 C -0.10 0.27 7.23 -25.92 -0.19 0.09 16 6 C -0.12 0.49 3.75 -89.80 -0.34 0.15 16 7 H 0.10 -0.50 8.14 -51.93 -0.42 -0.93 16 8 C 0.13 -0.33 5.51 -4.04 -0.02 -0.35 16 9 N -0.73 2.36 5.56 -60.29 -0.33 2.02 16 10 C 0.51 -0.46 7.52 -10.99 -0.08 -0.54 16 11 O -0.51 -1.58 14.33 5.55 0.08 -1.50 16 12 C 0.04 -0.10 5.03 -4.98 -0.03 -0.13 16 13 N -0.49 0.47 3.22 -180.32 -0.58 -0.11 16 14 C 0.02 -0.02 8.74 60.07 0.53 0.51 16 15 C 0.13 -0.05 4.61 -83.78 -0.39 -0.43 16 16 C -0.09 -0.10 5.28 -104.42 -0.55 -0.65 16 17 C -0.07 -0.07 2.30 36.01 0.08 0.02 16 18 O -0.53 -1.17 12.65 -35.23 -0.45 -1.62 16 19 Si 0.74 0.26 30.40 -169.99 -5.17 -4.90 16 20 C -0.07 -0.12 8.01 -39.61 -0.32 -0.44 16 21 C -0.18 -0.23 5.46 -104.59 -0.57 -0.80 16 22 C 0.51 1.11 3.36 36.01 0.12 1.23 16 23 F -0.17 -0.53 17.30 2.25 0.04 -0.50 16 24 F -0.17 -0.35 16.46 2.25 0.04 -0.31 16 25 F -0.18 -0.53 16.46 2.25 0.04 -0.50 16 26 C -0.06 0.03 9.39 -39.61 -0.37 -0.34 16 27 C -0.15 0.21 8.66 -39.38 -0.34 -0.13 16 28 C -0.12 0.41 7.22 -25.92 -0.19 0.22 16 29 H 0.08 -0.19 8.14 -51.92 -0.42 -0.61 16 30 H 0.10 -0.21 8.14 -51.92 -0.42 -0.63 16 31 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 32 H 0.10 -0.17 8.06 -51.93 -0.42 -0.59 16 33 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 34 H 0.07 -0.09 7.84 -51.93 -0.41 -0.49 16 35 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 36 H 0.40 -2.32 8.47 -40.82 -0.35 -2.67 16 37 H 0.11 -0.40 8.06 -51.93 -0.42 -0.82 16 38 H 0.07 -0.34 7.47 -51.93 -0.39 -0.72 16 39 H 0.08 -0.08 7.40 -51.93 -0.38 -0.47 16 40 H 0.10 0.04 5.82 -51.93 -0.30 -0.27 16 41 H 0.03 -0.07 7.35 -51.93 -0.38 -0.45 16 42 H 0.08 0.04 7.79 -51.93 -0.40 -0.36 16 43 H 0.37 0.35 7.46 45.56 0.34 0.69 16 44 H -0.25 -0.70 6.81 56.52 0.38 -0.31 16 45 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 46 H 0.14 0.30 4.47 -52.49 -0.23 0.06 16 47 H 0.14 -0.30 7.60 -52.49 -0.40 -0.70 16 48 H 0.14 -0.48 7.14 -52.49 -0.37 -0.86 16 49 H 0.07 -0.29 8.14 -51.93 -0.42 -0.72 16 50 H 0.10 -0.22 7.86 -51.93 -0.41 -0.62 16 LS Contribution 427.49 15.07 6.44 6.44 Total: 0.00 -6.52 427.49 -11.08 -17.59 By element: Atomic # 1 Polarization: -6.83 SS G_CDS: -7.12 Total: -13.95 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -1.68 Total: -0.23 kcal Atomic # 7 Polarization: 2.83 SS G_CDS: -0.91 Total: 1.92 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: -0.37 Total: -3.12 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.11 Total: -1.30 kcal Atomic # 14 Polarization: 0.26 SS G_CDS: -5.17 Total: -4.90 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.38 Total: -2.45 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -6.52 -11.08 -17.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_6406254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.510 kcal (2) G-P(sol) polarization free energy of solvation -6.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds