Wall clock time and date at job start Tue Mar 9 2021 12:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81399 * 103.00363 * 2 1 4 4 H 1.09002 * 112.84936 * 43.79906 * 3 2 1 5 5 C 1.53773 * 113.61804 * 174.99694 * 3 2 1 6 6 C 1.53782 * 87.08228 * 140.06483 * 5 3 2 7 7 H 1.08999 * 113.61867 * 89.20194 * 6 5 3 8 8 C 1.53000 * 113.61641 * 220.01962 * 6 5 3 9 9 N 1.46505 * 109.47056 * 184.99680 * 8 6 5 10 10 C 1.34776 * 119.99793 * 180.02562 * 9 8 6 11 11 O 1.21287 * 120.00349 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99994 * 180.02562 * 10 9 8 13 13 N 1.46902 * 109.46941 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00162 * 66.04703 * 13 12 10 15 15 C 1.39680 * 110.99776 * 189.99682 * 13 12 10 16 16 C 1.38893 * 120.07440 * 119.99910 * 15 13 12 17 17 C 1.50702 * 120.03534 * 0.25616 * 16 15 13 18 18 O 1.42894 * 109.47091 * 74.72098 * 17 16 15 19 19 Si 1.86297 * 109.46754 * 194.72373 * 17 16 15 20 20 C 1.38125 * 119.92196 * 179.97438 * 16 15 13 21 21 C 1.38260 * 120.07750 * 0.02562 * 20 16 15 22 22 C 1.50701 * 119.92476 * 179.97438 * 21 20 16 23 23 F 1.39897 * 109.46754 * 90.00305 * 22 21 20 24 24 F 1.39901 * 109.46926 * 209.99818 * 22 21 20 25 25 F 1.39903 * 109.47248 * 330.00181 * 22 21 20 26 26 C 1.38307 * 120.14994 * 0.02562 * 21 20 16 27 27 C 1.38087 * 120.07543 * 359.97438 * 26 21 20 28 28 C 1.53779 * 113.68935 * 272.53911 * 3 2 1 29 29 H 1.09004 * 109.47260 * 60.00317 * 1 2 3 30 30 H 1.09000 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47334 * 300.00215 * 1 2 3 32 32 H 1.08999 * 113.61283 * 25.52225 * 5 3 2 33 33 H 1.08994 * 113.69644 * 254.62229 * 5 3 2 34 34 H 1.09002 * 109.46913 * 64.99937 * 8 6 5 35 35 H 1.08999 * 109.47575 * 304.99857 * 8 6 5 36 36 H 0.96993 * 120.00127 * 0.02562 * 9 8 6 37 37 H 1.09002 * 109.47346 * 59.99726 * 12 10 9 38 38 H 1.09000 * 109.46599 * 299.99437 * 12 10 9 39 39 H 1.09000 * 109.46868 * 183.95273 * 14 13 12 40 40 H 1.09004 * 109.46565 * 303.94905 * 14 13 12 41 41 H 1.08994 * 109.46903 * 63.95192 * 14 13 12 42 42 H 1.09003 * 109.46908 * 314.72317 * 17 16 15 43 43 H 0.96695 * 114.00312 * 300.00077 * 18 17 16 44 44 H 1.48499 * 110.00019 * 298.68132 * 19 17 16 45 45 H 1.48503 * 110.00504 * 59.99986 * 19 17 16 46 46 H 1.07995 * 119.95706 * 180.02562 * 20 16 15 47 47 H 1.08001 * 119.96376 * 180.02562 * 26 21 20 48 48 H 1.08001 * 120.03643 * 179.97438 * 27 26 21 49 49 H 1.08994 * 113.61915 * 105.45616 * 28 3 2 50 50 H 1.09004 * 113.61404 * 334.54690 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 0.6952 5 6 3.7283 2.0519 0.1229 6 6 3.5202 3.1752 -0.9067 7 1 3.2654 4.1359 -0.4593 8 6 4.6473 3.2796 -1.9361 9 7 4.4192 4.4455 -2.7934 10 6 5.2902 4.7375 -3.7796 11 8 6.2626 4.0348 -3.9576 12 6 5.0559 5.9371 -4.6611 13 7 6.1380 6.0372 -5.6495 14 6 6.1036 4.9045 -6.5844 15 6 6.0795 7.2532 -6.3343 16 6 7.1501 8.1363 -6.2773 17 6 8.3793 7.7811 -5.4811 18 8 9.1379 6.7986 -6.1889 19 14 9.4189 9.3066 -5.2305 20 6 7.0891 9.3377 -6.9561 21 6 5.9639 9.6619 -7.6911 22 6 5.9008 10.9739 -8.4299 23 9 6.4106 10.8065 -9.7219 24 9 4.5714 11.4032 -8.5052 25 9 6.6617 11.9299 -7.7485 26 6 4.8956 8.7854 -7.7491 27 6 4.9499 7.5826 -7.0729 28 6 2.3003 2.3835 -1.4068 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.3572 1.2387 -0.2394 33 1 4.0272 2.4119 1.1073 34 1 4.6658 2.3772 -2.5473 35 1 5.6014 3.3888 -1.4205 36 1 3.6413 5.0072 -2.6513 37 1 5.0381 6.8394 -4.0497 38 1 4.1015 5.8284 -5.1763 39 1 6.9559 4.9659 -7.2610 40 1 6.1504 3.9702 -6.0249 41 1 5.1790 4.9371 -7.1606 42 1 8.0813 7.3812 -4.5118 43 1 8.6580 5.9757 -6.3551 44 1 9.8580 9.8434 -6.5436 45 1 8.6413 10.3362 -4.4953 46 1 7.9214 10.0245 -6.9126 47 1 4.0183 9.0415 -8.3245 48 1 4.1152 6.8988 -7.1183 49 1 1.4451 3.0112 -1.6569 50 1 2.5389 1.6609 -2.1873 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_6406254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:33 Heat of formation + Delta-G solvation = -139.996539 kcal Electronic energy + Delta-G solvation = -36283.824064 eV Core-core repulsion = 30990.548720 eV Total energy + Delta-G solvation = -5293.275344 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.137 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -51.37859 -48.90358 -48.84150 -41.85308 -40.78475 -39.75690 -37.75060 -37.58983 -35.46692 -33.11460 -32.27419 -30.58648 -29.81331 -28.41717 -27.65585 -26.99253 -26.70681 -25.22392 -24.07264 -23.32534 -22.13330 -21.58338 -20.45912 -19.72977 -19.67813 -19.57384 -18.51318 -18.19959 -18.05694 -17.30883 -16.99016 -16.92623 -16.62754 -16.51582 -16.26498 -15.78509 -15.73868 -15.64457 -15.51504 -15.28106 -15.19815 -15.18641 -15.02388 -15.00230 -14.99195 -14.69925 -14.59423 -14.24092 -14.09816 -14.01087 -13.95834 -13.70737 -13.49152 -13.43693 -13.34489 -13.06640 -12.89616 -12.77215 -12.55940 -12.30413 -11.89143 -11.75096 -11.44247 -11.33998 -11.07856 -10.90117 -10.76293 -10.36281 -10.19660 -10.07317 -9.69052 -8.71534 -4.89029 -0.49098 -0.12104 0.77988 1.30852 1.42494 1.56735 1.63191 1.64680 1.87222 1.92254 2.06559 2.47931 2.67666 2.78036 3.18167 3.39744 3.40875 3.45539 3.47195 3.62519 3.73029 3.80754 3.81569 3.95961 3.97349 4.04000 4.13906 4.19409 4.26047 4.29912 4.31079 4.33897 4.37510 4.42653 4.46371 4.54408 4.65683 4.75812 4.77625 4.80836 4.84940 4.85120 4.86555 4.96560 4.98328 5.05381 5.07399 5.26864 5.35918 5.51588 5.54806 6.01975 6.56917 6.60225 7.28435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.321 6.321 3 C -0.074 4.074 4 H 0.117 0.883 5 C -0.105 4.105 6 C -0.102 4.102 7 H 0.122 0.878 8 C 0.136 3.864 9 N -0.716 5.716 10 C 0.513 3.487 11 O -0.561 6.561 12 C 0.039 3.961 13 N -0.503 5.503 14 C 0.022 3.978 15 C 0.136 3.864 16 C -0.099 4.099 17 C -0.071 4.071 18 O -0.545 6.545 19 Si 0.788 3.212 20 C -0.084 4.084 21 C -0.187 4.187 22 C 0.507 3.493 23 F -0.181 7.181 24 F -0.172 7.172 25 F -0.185 7.185 26 C -0.052 4.052 27 C -0.134 4.134 28 C -0.116 4.116 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.416 0.584 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.372 0.628 44 H -0.289 1.289 45 H -0.260 1.260 46 H 0.126 0.874 47 H 0.161 0.839 48 H 0.167 0.833 49 H 0.089 0.911 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.560 -0.492 4.209 8.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.093 6.093 3 C -0.203 4.203 4 H 0.135 0.865 5 C -0.145 4.145 6 C -0.122 4.122 7 H 0.140 0.860 8 C 0.012 3.988 9 N -0.370 5.370 10 C 0.299 3.701 11 O -0.439 6.439 12 C -0.090 4.090 13 N -0.224 5.224 14 C -0.123 4.123 15 C 0.042 3.958 16 C -0.100 4.100 17 C -0.180 4.180 18 O -0.351 6.351 19 Si 0.690 3.310 20 C -0.102 4.102 21 C -0.189 4.189 22 C 0.453 3.547 23 F -0.162 7.162 24 F -0.153 7.153 25 F -0.166 7.166 26 C -0.071 4.071 27 C -0.154 4.154 28 C -0.156 4.156 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.253 0.747 37 H 0.140 0.860 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.221 0.779 44 H -0.217 1.217 45 H -0.186 1.186 46 H 0.143 0.857 47 H 0.178 0.822 48 H 0.184 0.816 49 H 0.107 0.893 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.255 -0.645 4.238 6.781 hybrid contribution -3.079 0.658 -1.103 3.336 sum -8.334 0.013 3.135 8.904 Atomic orbital electron populations 1.23362 0.91736 1.06993 1.05722 1.87246 1.10421 1.13810 1.97793 1.24763 1.01248 0.91992 1.02251 0.86501 1.22790 0.93007 0.98036 1.00644 1.22664 0.94577 0.99353 0.95650 0.85960 1.21236 0.98231 0.88013 0.91299 1.45825 1.27877 1.30237 1.33050 1.20686 0.82278 0.86069 0.81084 1.90724 1.30165 1.52236 1.70758 1.22159 0.94188 0.98151 0.94539 1.59163 1.47056 1.00177 1.16054 1.22654 1.01749 0.93030 0.94912 1.18823 0.92491 0.90851 0.93636 1.20326 0.97387 0.93254 0.99032 1.25202 0.94492 1.02241 0.96072 1.86673 1.42065 1.27968 1.78434 0.92380 0.85843 0.71313 0.81460 1.20784 0.96871 0.96969 0.95567 1.19978 0.99064 0.95267 1.04560 1.18397 0.73721 0.85241 0.77337 1.93234 1.87226 1.95583 1.40166 1.93205 1.34715 1.91149 1.96273 1.93190 1.76387 1.67223 1.79820 1.21133 0.96936 0.92307 0.96677 1.21962 0.99306 0.97158 0.96933 1.23337 0.98810 0.98834 0.94595 0.89545 0.88025 0.89676 0.90072 0.89256 0.92572 0.92244 0.74665 0.85986 0.88109 0.91030 0.89757 0.93332 0.89148 0.77854 1.21661 1.18561 0.85705 0.82183 0.81571 0.89252 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.42 10.76 113.37 1.22 1.64 16 2 S -0.32 -0.40 22.18 -56.49 -1.25 -1.65 16 3 C -0.07 0.37 4.27 31.12 0.13 0.50 16 4 H 0.12 -0.82 8.14 -2.39 -0.02 -0.84 16 5 C -0.11 0.57 7.23 31.12 0.22 0.80 16 6 C -0.10 0.94 3.75 -10.27 -0.04 0.90 16 7 H 0.12 -1.56 8.14 -2.39 -0.02 -1.58 16 8 C 0.14 -0.69 5.51 86.38 0.48 -0.22 16 9 N -0.72 5.54 5.56 -463.04 -2.57 2.97 16 10 C 0.51 -1.32 7.52 87.66 0.66 -0.66 16 11 O -0.56 -3.79 14.33 -3.05 -0.04 -3.83 16 12 C 0.04 -0.29 5.03 85.56 0.43 0.14 16 13 N -0.50 1.52 3.22 -724.41 -2.33 -0.81 16 14 C 0.02 -0.06 8.74 127.69 1.12 1.05 16 15 C 0.14 -0.27 4.61 38.21 0.18 -0.09 16 16 C -0.10 -0.23 5.28 -19.73 -0.10 -0.34 16 17 C -0.07 -0.18 2.30 71.24 0.16 -0.02 16 18 O -0.54 -2.90 12.65 -148.98 -1.89 -4.79 16 19 Si 0.79 1.65 30.40 68.60 2.09 3.74 16 20 C -0.08 -0.38 8.01 22.25 0.18 -0.20 16 21 C -0.19 -0.49 5.46 -19.84 -0.11 -0.60 16 22 C 0.51 2.48 3.36 71.24 0.24 2.72 16 23 F -0.18 -1.26 17.30 44.97 0.78 -0.48 16 24 F -0.17 -0.65 16.46 44.97 0.74 0.09 16 25 F -0.18 -1.36 16.46 44.97 0.74 -0.62 16 26 C -0.05 0.14 9.39 22.25 0.21 0.35 16 27 C -0.13 0.72 8.66 22.40 0.19 0.91 16 28 C -0.12 0.90 7.22 31.12 0.22 1.13 16 29 H 0.09 -0.50 8.14 -2.39 -0.02 -0.51 16 30 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.08 -0.18 8.06 -2.39 -0.02 -0.19 16 33 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.06 -0.07 7.84 -2.39 -0.02 -0.09 16 35 H 0.06 -0.11 8.14 -2.39 -0.02 -0.12 16 36 H 0.42 -5.90 8.47 -92.71 -0.79 -6.68 16 37 H 0.12 -1.23 8.06 -2.39 -0.02 -1.25 16 38 H 0.10 -1.31 7.47 -2.39 -0.02 -1.33 16 39 H 0.07 -0.15 7.40 -2.39 -0.02 -0.17 16 40 H 0.08 0.09 5.82 -2.38 -0.01 0.07 16 41 H 0.05 -0.31 7.35 -2.39 -0.02 -0.33 16 42 H 0.09 0.10 7.79 -2.39 -0.02 0.08 16 43 H 0.37 1.05 7.46 -74.06 -0.55 0.50 16 44 H -0.29 -2.42 6.81 99.48 0.68 -1.74 16 45 H -0.26 -1.07 7.11 99.48 0.71 -0.37 16 46 H 0.13 0.80 4.47 -2.91 -0.01 0.79 16 47 H 0.16 -1.07 7.60 -2.91 -0.02 -1.09 16 48 H 0.17 -1.87 7.14 -2.91 -0.02 -1.89 16 49 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 50 H 0.08 -0.36 7.86 -2.38 -0.02 -0.38 16 Total: 0.00 -18.33 427.49 1.33 -17.00 By element: Atomic # 1 Polarization: -19.29 SS G_CDS: -0.33 Total: -19.62 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.39 Total: 8.00 kcal Atomic # 7 Polarization: 7.06 SS G_CDS: -4.90 Total: 2.16 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -1.93 Total: -8.62 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 2.26 Total: -1.01 kcal Atomic # 14 Polarization: 1.65 SS G_CDS: 2.09 Total: 3.74 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -1.25 Total: -1.65 kcal Total: -18.33 1.33 -17.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_6406254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.992 kcal (2) G-P(sol) polarization free energy of solvation -18.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds