Wall clock time and date at job start Tue Mar 9 2021 12:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35963 * 116.99931 * 2 1 4 4 C 1.39455 * 120.11807 * 180.02562 * 3 2 1 5 5 O 1.34781 * 133.24102 * 359.72207 * 4 3 2 6 6 C 1.34924 * 110.84059 * 180.02562 * 5 4 3 7 7 C 1.46994 * 125.14000 * 179.97438 * 6 5 4 8 8 O 1.21655 * 119.99724 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99629 * 0.03935 * 7 6 5 10 10 C 1.46500 * 119.99603 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47281 * 180.02562 * 10 9 7 12 12 H 1.09010 * 112.84412 * 316.19394 * 11 10 9 13 13 C 1.53782 * 113.61855 * 87.49981 * 11 10 9 14 14 C 1.53777 * 87.07984 * 139.98543 * 13 11 10 15 15 H 1.08997 * 113.69093 * 89.12860 * 14 13 11 16 16 S 1.81408 * 113.61219 * 220.02037 * 14 13 11 17 17 C 1.81399 * 102.99767 * 272.49770 * 16 14 13 18 18 C 1.53781 * 113.61740 * 185.00213 * 11 10 9 19 19 C 1.35814 * 109.71847 * 359.97438 * 6 5 4 20 20 C 1.40610 * 119.13490 * 179.72259 * 4 3 2 21 21 C 1.39770 * 120.11997 * 359.97438 * 20 4 3 22 22 C 1.50706 * 120.09205 * 179.97438 * 21 20 4 23 23 O 1.42891 * 109.46921 * 284.99579 * 22 21 20 24 24 Si 1.86303 * 109.46822 * 164.99973 * 22 21 20 25 25 C 1.36633 * 119.81484 * 359.97438 * 21 20 4 26 26 C 1.38260 * 120.12286 * 359.72085 * 3 2 1 27 27 H 1.08999 * 109.47205 * 60.00351 * 1 2 3 28 28 H 1.08996 * 109.47226 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47163 * 300.00446 * 1 2 3 30 30 H 0.97000 * 120.00331 * 0.02562 * 9 7 6 31 31 H 1.09007 * 109.46801 * 299.99941 * 10 9 7 32 32 H 1.08999 * 109.47264 * 59.99724 * 10 9 7 33 33 H 1.09001 * 113.61168 * 254.53699 * 13 11 10 34 34 H 1.08994 * 113.61204 * 25.43360 * 13 11 10 35 35 H 1.09005 * 109.47581 * 60.00100 * 17 16 14 36 36 H 1.08995 * 109.47018 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.47412 * 299.99621 * 17 16 14 38 38 H 1.09001 * 113.61111 * 334.56380 * 18 11 10 39 39 H 1.08995 * 113.61731 * 105.46747 * 18 11 10 40 40 H 1.08001 * 126.95180 * 179.97438 * 19 6 5 41 41 H 1.08999 * 109.47048 * 45.00286 * 22 21 20 42 42 H 0.96694 * 114.00691 * 299.99960 * 23 22 21 43 43 H 1.48492 * 110.00381 * 58.68212 * 24 22 21 44 44 H 1.48504 * 109.99526 * 180.02562 * 24 22 21 45 45 H 1.08000 * 119.75328 * 180.02562 * 25 21 20 46 46 H 1.07994 * 119.65978 * 0.25578 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2873 -0.0005 5 8 4.4141 0.3572 0.0036 6 6 5.6317 0.9384 0.0013 7 6 6.9131 0.2182 0.0052 8 8 7.9596 0.8386 0.0031 9 7 6.9285 -1.1295 0.0108 10 6 8.2056 -1.8473 0.0152 11 6 7.9434 -3.3546 0.0205 12 1 7.1557 -3.6447 0.7159 13 6 7.7792 -3.9564 -1.3852 14 6 8.5945 -5.1584 -0.8802 15 1 7.9855 -5.9434 -0.4320 16 16 9.7803 -5.7948 -2.0966 17 6 8.7923 -6.9829 -3.0467 18 6 9.2206 -4.2017 0.1482 19 6 5.4945 2.2896 -0.0051 20 6 4.0555 2.5509 -0.0065 21 6 3.2767 3.7115 -0.0123 22 6 3.9384 5.0655 -0.0181 23 8 4.4598 5.3463 1.2823 24 14 2.6869 6.3662 -0.4795 25 6 1.9137 3.6150 -0.0127 26 6 1.2957 2.3726 -0.0058 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 6.0941 -1.6241 0.0119 31 1 8.7751 -1.5810 -0.8753 32 1 8.7731 -1.5737 0.9047 33 1 6.7477 -4.2030 -1.6367 34 1 8.2814 -3.3852 -2.1660 35 1 7.9516 -6.4672 -3.5112 36 1 9.4128 -7.4351 -3.8203 37 1 8.4184 -7.7599 -2.3801 38 1 10.1168 -3.6976 -0.2134 39 1 9.3527 -4.6465 1.1345 40 1 6.2875 3.0228 -0.0079 41 1 4.7512 5.0696 -0.7443 42 1 3.7907 5.3588 1.9802 43 1 1.5578 6.3495 0.4848 44 1 3.3272 7.7061 -0.4893 45 1 1.3129 4.5125 -0.0176 46 1 0.2175 2.3120 -0.0062 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_6672420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:39 Heat of formation + Delta-G solvation = -38.023774 kcal Electronic energy + Delta-G solvation = -29700.817303 eV Core-core repulsion = 25458.547860 eV Total energy + Delta-G solvation = -4242.269443 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.122 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.65847 -41.03775 -40.54827 -39.70582 -39.12992 -37.09535 -35.66351 -33.55730 -31.98628 -31.20911 -30.02941 -29.54690 -28.54438 -26.86557 -26.36314 -25.26355 -23.95920 -23.63251 -21.98942 -21.68005 -20.80205 -19.69255 -18.98740 -18.64880 -17.94371 -17.69298 -17.54567 -17.04242 -16.91279 -16.76876 -16.60088 -16.23858 -15.97472 -15.86977 -15.63413 -15.15875 -14.80175 -14.67408 -14.65271 -14.49315 -14.27817 -14.17142 -14.05822 -13.61484 -13.57304 -13.46446 -13.45245 -13.34226 -12.90567 -12.63969 -12.36166 -12.14290 -12.04416 -11.92672 -11.68278 -11.50367 -11.33823 -10.94176 -10.82771 -10.61425 -10.25157 -9.76476 -8.99726 -8.65108 -5.00457 -0.58115 0.11524 0.72126 0.72557 1.21001 1.30643 1.51726 1.57500 1.91411 1.95446 2.05383 2.08783 2.40024 3.17992 3.28284 3.32079 3.40297 3.49818 3.51700 3.60148 3.62833 3.83036 3.86900 3.97073 4.04530 4.07206 4.10080 4.17362 4.18239 4.19931 4.21797 4.43241 4.47140 4.48133 4.51821 4.60223 4.64098 4.71084 4.75011 4.81124 4.84475 4.89311 4.91035 5.07160 5.15201 5.23332 5.27864 5.33620 5.62992 6.14611 6.33855 6.38999 6.95275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.151 3.849 4 C 0.046 3.954 5 O -0.174 6.174 6 C -0.023 4.023 7 C 0.601 3.399 8 O -0.509 6.509 9 N -0.716 5.716 10 C 0.129 3.871 11 C -0.122 4.122 12 H 0.103 0.897 13 C -0.124 4.124 14 C -0.084 4.084 15 H 0.106 0.894 16 S -0.254 6.254 17 C -0.122 4.122 18 C -0.099 4.099 19 C -0.104 4.104 20 C -0.081 4.081 21 C -0.095 4.095 22 C -0.074 4.074 23 O -0.525 6.525 24 Si 0.692 3.308 25 C -0.096 4.096 26 C -0.178 4.178 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.408 0.592 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.175 0.825 41 H 0.119 0.881 42 H 0.375 0.625 43 H -0.258 1.258 44 H -0.255 1.255 45 H 0.140 0.860 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 -2.440 -1.370 7.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.105 3.895 4 C -0.003 4.003 5 O -0.076 6.076 6 C -0.073 4.073 7 C 0.386 3.614 8 O -0.385 6.385 9 N -0.367 5.367 10 C 0.006 3.994 11 C -0.142 4.142 12 H 0.121 0.879 13 C -0.163 4.163 14 C -0.213 4.213 15 H 0.124 0.876 16 S -0.025 6.025 17 C -0.291 4.291 18 C -0.139 4.139 19 C -0.125 4.125 20 C -0.082 4.082 21 C -0.095 4.095 22 C -0.183 4.183 23 O -0.331 6.331 24 Si 0.593 3.407 25 C -0.114 4.114 26 C -0.197 4.197 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.244 0.756 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.192 0.808 41 H 0.137 0.863 42 H 0.223 0.777 43 H -0.183 1.183 44 H -0.180 1.180 45 H 0.158 0.842 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.262 -1.549 -1.626 5.721 hybrid contribution -1.929 -0.852 1.333 2.495 sum -7.191 -2.402 -0.293 7.587 Atomic orbital electron populations 1.23188 0.77324 1.04739 1.01804 1.86170 1.22150 1.25712 1.88381 1.17744 0.86500 0.85868 0.99426 1.18779 0.87441 0.86990 1.07073 1.84048 1.12673 1.34729 1.76126 1.21984 0.83868 0.92615 1.08872 1.16609 0.85418 0.82125 0.77272 1.90932 1.30315 1.67460 1.49818 1.45884 1.10688 1.05687 1.74426 1.21494 0.84871 0.89675 1.03383 1.22775 0.99591 0.93264 0.98618 0.87933 1.23428 1.00616 0.95537 0.96757 1.24674 0.99255 0.99128 0.98224 0.87574 1.86986 1.22318 1.53262 1.39928 1.23371 1.02919 1.00272 1.02511 1.22764 0.97279 0.95171 0.98639 1.22753 0.94756 0.94342 1.00633 1.19406 0.92635 0.92040 1.04144 1.19404 0.92812 0.94336 1.02992 1.25032 1.06865 0.97887 0.88533 1.86638 1.37577 1.92531 1.16369 0.94894 0.77537 0.77932 0.90371 1.20586 0.93487 0.97803 0.99510 1.20963 1.00350 0.90538 1.07830 0.92008 0.87661 0.92165 0.75641 0.90338 0.90430 0.90742 0.88316 0.90413 0.88061 0.90496 0.88507 0.89796 0.80793 0.86328 0.77718 1.18328 1.17961 0.84247 0.83511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 101.05 0.99 0.92 16 2 O -0.31 -0.36 10.50 -19.63 -0.21 -0.56 16 3 C 0.15 0.22 6.70 -39.12 -0.26 -0.04 16 4 C 0.05 0.14 7.35 -38.23 -0.28 -0.15 16 5 O -0.17 -0.54 10.28 2.65 0.03 -0.52 16 6 C -0.02 -0.07 7.07 -36.90 -0.26 -0.33 16 7 C 0.60 1.89 7.80 -12.71 -0.10 1.79 16 8 O -0.51 -3.13 16.83 5.23 0.09 -3.04 16 9 N -0.72 -0.15 5.55 -61.52 -0.34 -0.49 16 10 C 0.13 -0.09 5.51 -4.04 -0.02 -0.11 16 11 C -0.12 0.30 3.75 -89.81 -0.34 -0.04 16 12 H 0.10 -0.34 8.14 -51.92 -0.42 -0.76 16 13 C -0.12 0.24 7.22 -25.92 -0.19 0.05 16 14 C -0.08 0.10 4.28 -25.92 -0.11 -0.01 16 15 H 0.11 -0.19 8.14 -51.93 -0.42 -0.61 16 16 S -0.25 -0.26 22.17 -107.50 -2.38 -2.64 16 17 C -0.12 0.13 10.76 101.05 1.09 1.21 16 18 C -0.10 0.17 7.23 -25.92 -0.19 -0.01 16 19 C -0.10 -0.31 10.68 -37.23 -0.40 -0.70 16 20 C -0.08 -0.20 6.16 -105.21 -0.65 -0.85 16 21 C -0.09 -0.06 5.26 -104.63 -0.55 -0.61 16 22 C -0.07 0.00 2.71 36.01 0.10 0.10 16 23 O -0.52 -0.76 12.88 -35.23 -0.45 -1.22 16 24 Si 0.69 -1.02 30.25 -169.99 -5.14 -6.16 16 25 C -0.10 0.08 8.62 -39.97 -0.34 -0.26 16 26 C -0.18 0.14 9.03 -39.38 -0.36 -0.22 16 27 H 0.06 -0.26 7.65 -51.93 -0.40 -0.66 16 28 H 0.11 -0.45 8.14 -51.93 -0.42 -0.87 16 29 H 0.06 -0.24 7.67 -51.93 -0.40 -0.64 16 30 H 0.41 -0.58 8.19 -40.82 -0.33 -0.92 16 31 H 0.08 0.01 7.84 -51.93 -0.41 -0.40 16 32 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 33 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 34 H 0.10 -0.09 7.85 -51.93 -0.41 -0.50 16 35 H 0.08 -0.13 8.14 -51.92 -0.42 -0.55 16 36 H 0.10 -0.14 8.14 -51.93 -0.42 -0.57 16 37 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 38 H 0.10 -0.10 8.06 -51.93 -0.42 -0.52 16 39 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 40 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 41 H 0.12 -0.05 7.96 -51.93 -0.41 -0.46 16 42 H 0.38 -0.58 8.70 45.56 0.40 -0.18 16 43 H -0.26 0.08 6.69 56.52 0.38 0.45 16 44 H -0.25 -0.50 7.11 56.52 0.40 -0.10 16 45 H 0.14 -0.38 4.81 -52.49 -0.25 -0.64 16 46 H 0.15 -0.52 6.26 -52.49 -0.33 -0.85 16 LS Contribution 398.52 15.07 6.01 6.01 Total: 0.00 -8.16 398.52 -10.68 -18.85 By element: Atomic # 1 Polarization: -4.56 SS G_CDS: -6.41 Total: -10.97 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.87 Total: 0.74 kcal Atomic # 7 Polarization: -0.15 SS G_CDS: -0.34 Total: -0.49 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.54 Total: -5.34 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: -5.14 Total: -6.16 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -2.38 Total: -2.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -8.16 -10.68 -18.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_6672420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.177 kcal (2) G-P(sol) polarization free energy of solvation -8.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds