Wall clock time and date at job start Tue Mar 9 2021 12:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35963 * 116.99931 * 2 1 4 4 C 1.39455 * 120.11807 * 180.02562 * 3 2 1 5 5 O 1.34781 * 133.24102 * 359.72207 * 4 3 2 6 6 C 1.34924 * 110.84059 * 180.02562 * 5 4 3 7 7 C 1.46994 * 125.14000 * 179.97438 * 6 5 4 8 8 O 1.21655 * 119.99724 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99629 * 0.03935 * 7 6 5 10 10 C 1.46500 * 119.99603 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47281 * 180.02562 * 10 9 7 12 12 H 1.09010 * 112.84412 * 316.19394 * 11 10 9 13 13 C 1.53782 * 113.61855 * 87.49981 * 11 10 9 14 14 C 1.53777 * 87.07984 * 139.98543 * 13 11 10 15 15 H 1.08997 * 113.69093 * 89.12860 * 14 13 11 16 16 S 1.81408 * 113.61219 * 220.02037 * 14 13 11 17 17 C 1.81399 * 102.99767 * 272.49770 * 16 14 13 18 18 C 1.53781 * 113.61740 * 185.00213 * 11 10 9 19 19 C 1.35814 * 109.71847 * 359.97438 * 6 5 4 20 20 C 1.40610 * 119.13490 * 179.72259 * 4 3 2 21 21 C 1.39770 * 120.11997 * 359.97438 * 20 4 3 22 22 C 1.50706 * 120.09205 * 179.97438 * 21 20 4 23 23 O 1.42891 * 109.46921 * 284.99579 * 22 21 20 24 24 Si 1.86303 * 109.46822 * 164.99973 * 22 21 20 25 25 C 1.36633 * 119.81484 * 359.97438 * 21 20 4 26 26 C 1.38260 * 120.12286 * 359.72085 * 3 2 1 27 27 H 1.08999 * 109.47205 * 60.00351 * 1 2 3 28 28 H 1.08996 * 109.47226 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47163 * 300.00446 * 1 2 3 30 30 H 0.97000 * 120.00331 * 0.02562 * 9 7 6 31 31 H 1.09007 * 109.46801 * 299.99941 * 10 9 7 32 32 H 1.08999 * 109.47264 * 59.99724 * 10 9 7 33 33 H 1.09001 * 113.61168 * 254.53699 * 13 11 10 34 34 H 1.08994 * 113.61204 * 25.43360 * 13 11 10 35 35 H 1.09005 * 109.47581 * 60.00100 * 17 16 14 36 36 H 1.08995 * 109.47018 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.47412 * 299.99621 * 17 16 14 38 38 H 1.09001 * 113.61111 * 334.56380 * 18 11 10 39 39 H 1.08995 * 113.61731 * 105.46747 * 18 11 10 40 40 H 1.08001 * 126.95180 * 179.97438 * 19 6 5 41 41 H 1.08999 * 109.47048 * 45.00286 * 22 21 20 42 42 H 0.96694 * 114.00691 * 299.99960 * 23 22 21 43 43 H 1.48492 * 110.00381 * 58.68212 * 24 22 21 44 44 H 1.48504 * 109.99526 * 180.02562 * 24 22 21 45 45 H 1.08000 * 119.75328 * 180.02562 * 25 21 20 46 46 H 1.07994 * 119.65978 * 0.25578 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2873 -0.0005 5 8 4.4141 0.3572 0.0036 6 6 5.6317 0.9384 0.0013 7 6 6.9131 0.2182 0.0052 8 8 7.9596 0.8386 0.0031 9 7 6.9285 -1.1295 0.0108 10 6 8.2056 -1.8473 0.0152 11 6 7.9434 -3.3546 0.0205 12 1 7.1557 -3.6447 0.7159 13 6 7.7792 -3.9564 -1.3852 14 6 8.5945 -5.1584 -0.8802 15 1 7.9855 -5.9434 -0.4320 16 16 9.7803 -5.7948 -2.0966 17 6 8.7923 -6.9829 -3.0467 18 6 9.2206 -4.2017 0.1482 19 6 5.4945 2.2896 -0.0051 20 6 4.0555 2.5509 -0.0065 21 6 3.2767 3.7115 -0.0123 22 6 3.9384 5.0655 -0.0181 23 8 4.4598 5.3463 1.2823 24 14 2.6869 6.3662 -0.4795 25 6 1.9137 3.6150 -0.0127 26 6 1.2957 2.3726 -0.0058 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 6.0941 -1.6241 0.0119 31 1 8.7751 -1.5810 -0.8753 32 1 8.7731 -1.5737 0.9047 33 1 6.7477 -4.2030 -1.6367 34 1 8.2814 -3.3852 -2.1660 35 1 7.9516 -6.4672 -3.5112 36 1 9.4128 -7.4351 -3.8203 37 1 8.4184 -7.7599 -2.3801 38 1 10.1168 -3.6976 -0.2134 39 1 9.3527 -4.6465 1.1345 40 1 6.2875 3.0228 -0.0079 41 1 4.7512 5.0696 -0.7443 42 1 3.7907 5.3588 1.9802 43 1 1.5578 6.3495 0.4848 44 1 3.3272 7.7061 -0.4893 45 1 1.3129 4.5125 -0.0176 46 1 0.2175 2.3120 -0.0062 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_6672420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:39 Heat of formation + Delta-G solvation = -36.500287 kcal Electronic energy + Delta-G solvation = -29700.751240 eV Core-core repulsion = 25458.547860 eV Total energy + Delta-G solvation = -4242.203380 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.122 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.77715 -41.13666 -40.54181 -39.74863 -39.13545 -37.12556 -35.81562 -33.67537 -32.01377 -31.27422 -29.96681 -29.51106 -28.39456 -26.74979 -26.33020 -25.31101 -24.02402 -23.64229 -22.06025 -21.80771 -20.74963 -19.74567 -19.04656 -18.62757 -17.99743 -17.81631 -17.56313 -17.13945 -16.91422 -16.77176 -16.53832 -16.23433 -16.04165 -15.87270 -15.66603 -15.14163 -14.82603 -14.70601 -14.59192 -14.54804 -14.25519 -14.22274 -14.05489 -13.53387 -13.50614 -13.49264 -13.43064 -13.27166 -12.86635 -12.48201 -12.26988 -12.13228 -12.05731 -11.87802 -11.66668 -11.50616 -11.39938 -11.04367 -10.80793 -10.61388 -10.38727 -9.84632 -9.02479 -8.72037 -4.89140 -0.69329 0.08157 0.59393 0.76244 1.15144 1.30099 1.59254 1.62761 1.86214 1.88448 1.97982 2.12661 2.37748 3.13712 3.35273 3.38824 3.44790 3.53816 3.60798 3.64617 3.74139 3.80520 3.85595 3.97026 4.10890 4.16312 4.29347 4.30312 4.31082 4.32623 4.41973 4.43255 4.48657 4.56598 4.70548 4.73401 4.76439 4.77765 4.82273 4.84851 4.85398 4.91955 4.98972 5.03328 5.10921 5.20621 5.32718 5.38734 5.56055 6.16199 6.27254 6.49831 6.78648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.138 3.862 4 C 0.021 3.979 5 O -0.180 6.180 6 C -0.032 4.032 7 C 0.600 3.400 8 O -0.547 6.547 9 N -0.700 5.700 10 C 0.129 3.871 11 C -0.107 4.107 12 H 0.120 0.880 13 C -0.120 4.120 14 C -0.073 4.073 15 H 0.118 0.882 16 S -0.316 6.316 17 C -0.111 4.111 18 C -0.100 4.100 19 C -0.114 4.114 20 C -0.096 4.096 21 C -0.100 4.100 22 C -0.090 4.090 23 O -0.548 6.548 24 Si 0.782 3.218 25 C -0.088 4.088 26 C -0.165 4.165 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.418 0.582 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.171 0.829 41 H 0.114 0.886 42 H 0.386 0.614 43 H -0.261 1.261 44 H -0.305 1.305 45 H 0.166 0.834 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.202 -2.729 -1.211 10.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.092 3.908 4 C -0.027 4.027 5 O -0.082 6.082 6 C -0.082 4.082 7 C 0.385 3.615 8 O -0.427 6.427 9 N -0.350 5.350 10 C 0.006 3.994 11 C -0.127 4.127 12 H 0.138 0.862 13 C -0.160 4.160 14 C -0.201 4.201 15 H 0.136 0.864 16 S -0.087 6.087 17 C -0.279 4.279 18 C -0.140 4.140 19 C -0.135 4.135 20 C -0.097 4.097 21 C -0.101 4.101 22 C -0.198 4.198 23 O -0.356 6.356 24 Si 0.686 3.314 25 C -0.106 4.106 26 C -0.184 4.184 27 H 0.095 0.905 28 H 0.134 0.866 29 H 0.091 0.909 30 H 0.255 0.745 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.188 0.812 41 H 0.132 0.868 42 H 0.236 0.764 43 H -0.187 1.187 44 H -0.234 1.234 45 H 0.183 0.817 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.178 -1.905 -1.462 8.523 hybrid contribution -1.071 -0.751 1.288 1.835 sum -9.249 -2.656 -0.175 9.624 Atomic orbital electron populations 1.23487 0.75316 1.06026 1.03161 1.86143 1.24301 1.25782 1.88427 1.17972 0.86060 0.86858 0.99895 1.19210 0.88247 0.87093 1.08135 1.84007 1.12652 1.35004 1.76502 1.21920 0.84010 0.92707 1.09594 1.16681 0.84992 0.82823 0.76970 1.90902 1.31483 1.68338 1.51970 1.45834 1.11559 1.04827 1.72818 1.21534 0.84312 0.90787 1.02736 1.22697 0.99742 0.91555 0.98719 0.86158 1.23377 1.00942 0.95060 0.96625 1.24728 0.98609 0.99355 0.97440 0.86401 1.87195 1.25100 1.54679 1.41749 1.23371 1.02585 0.99668 1.02279 1.22779 0.97115 0.95120 0.98943 1.22854 0.95427 0.94455 1.00720 1.19569 0.92283 0.92844 1.04996 1.19551 0.93487 0.93854 1.03202 1.25393 1.07744 0.98647 0.87976 1.86605 1.38967 1.92675 1.17373 0.93882 0.75420 0.73456 0.88690 1.20886 0.92893 0.98859 0.97957 1.21372 1.01816 0.89576 1.05622 0.90462 0.86619 0.90856 0.74492 0.91308 0.90860 0.89612 0.89543 0.89698 0.87870 0.89607 0.89578 0.88873 0.81184 0.86773 0.76439 1.18729 1.23369 0.81742 0.80274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.11 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.56 10.50 -93.14 -0.98 -1.54 16 3 C 0.14 0.34 6.70 22.57 0.15 0.49 16 4 C 0.02 0.15 7.35 23.14 0.17 0.32 16 5 O -0.18 -1.40 10.28 -13.42 -0.14 -1.54 16 6 C -0.03 -0.27 7.07 24.00 0.17 -0.10 16 7 C 0.60 5.06 7.80 86.54 0.67 5.73 16 8 O -0.55 -8.23 16.83 -4.20 -0.07 -8.30 16 9 N -0.70 -1.10 5.55 -466.78 -2.59 -3.69 16 10 C 0.13 -0.03 5.51 86.38 0.48 0.44 16 11 C -0.11 0.53 3.75 -10.27 -0.04 0.49 16 12 H 0.12 -0.95 8.14 -2.38 -0.02 -0.97 16 13 C -0.12 0.46 7.22 31.12 0.22 0.68 16 14 C -0.07 0.18 4.28 31.12 0.13 0.31 16 15 H 0.12 -0.54 8.14 -2.39 -0.02 -0.56 16 16 S -0.32 -0.93 22.17 -56.49 -1.25 -2.18 16 17 C -0.11 0.23 10.76 113.37 1.22 1.45 16 18 C -0.10 0.32 7.23 31.12 0.23 0.55 16 19 C -0.11 -0.94 10.68 23.79 0.25 -0.69 16 20 C -0.10 -0.59 6.16 -20.25 -0.12 -0.71 16 21 C -0.10 -0.11 5.26 -19.87 -0.10 -0.22 16 22 C -0.09 -0.02 2.71 71.24 0.19 0.17 16 23 O -0.55 -2.04 12.88 -148.98 -1.92 -3.96 16 24 Si 0.78 -3.03 30.25 68.60 2.08 -0.95 16 25 C -0.09 0.31 8.62 22.02 0.19 0.50 16 26 C -0.17 0.59 9.03 22.40 0.20 0.80 16 27 H 0.08 -0.84 7.65 -2.39 -0.02 -0.85 16 28 H 0.12 -1.16 8.14 -2.39 -0.02 -1.18 16 29 H 0.07 -0.76 7.67 -2.39 -0.02 -0.77 16 30 H 0.42 -0.98 8.19 -92.71 -0.76 -1.74 16 31 H 0.07 0.15 7.84 -2.38 -0.02 0.13 16 32 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.09 -0.07 7.85 -2.39 -0.02 -0.09 16 35 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.10 -0.27 8.14 -2.39 -0.02 -0.29 16 37 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.09 -0.06 8.06 -2.39 -0.02 -0.08 16 39 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.11 0.05 7.96 -2.39 -0.02 0.03 16 42 H 0.39 -1.08 8.70 -74.06 -0.64 -1.73 16 43 H -0.26 0.83 6.69 99.48 0.67 1.50 16 44 H -0.31 -1.43 7.11 99.48 0.71 -0.73 16 45 H 0.17 -1.43 4.81 -2.91 -0.01 -1.45 16 46 H 0.18 -1.90 6.26 -2.91 -0.02 -1.92 16 Total: 0.00 -21.79 398.52 -0.12 -21.91 By element: Atomic # 1 Polarization: -10.60 SS G_CDS: -0.37 Total: -10.98 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 5.13 Total: 11.22 kcal Atomic # 7 Polarization: -1.10 SS G_CDS: -2.59 Total: -3.69 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -3.11 Total: -15.34 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.08 Total: -0.95 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -1.25 Total: -2.18 kcal Total: -21.79 -0.12 -21.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_6672420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.587 kcal (2) G-P(sol) polarization free energy of solvation -21.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds