Wall clock time and date at job start Tue Mar 9 2021 12:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81398 * 103.00205 * 2 1 4 4 H 1.09002 * 112.84870 * 316.20022 * 3 2 1 5 5 C 1.53780 * 113.68967 * 87.46363 * 3 2 1 6 6 C 1.53784 * 87.08376 * 139.99328 * 5 3 2 7 7 H 1.09002 * 113.68787 * 89.12486 * 6 5 3 8 8 C 1.52995 * 113.61514 * 220.01813 * 6 5 3 9 9 N 1.46496 * 109.47185 * 272.49955 * 8 6 5 10 10 C 1.34784 * 120.00101 * 180.02562 * 9 8 6 11 11 O 1.21702 * 119.99710 * 359.97438 * 10 9 8 12 12 C 1.46580 * 120.00106 * 179.97438 * 10 9 8 13 13 C 1.36652 * 125.45587 * 179.97438 * 12 10 9 14 14 C 1.37472 * 113.29217 * 180.02562 * 13 12 10 15 15 C 1.50706 * 122.44556 * 179.97438 * 14 13 12 16 16 C 1.33811 * 115.10387 * 0.26540 * 14 13 12 17 17 C 1.50699 * 124.52248 * 179.72807 * 16 14 13 18 18 O 1.42902 * 109.46907 * 30.00580 * 17 16 14 19 19 Si 1.86300 * 109.47270 * 150.00040 * 17 16 14 20 20 S 1.70615 * 110.95504 * 359.58927 * 16 14 13 21 21 C 1.53776 * 87.07864 * 334.56892 * 6 5 3 22 22 H 1.09001 * 109.47380 * 299.99822 * 1 2 3 23 23 H 1.09010 * 109.46996 * 59.99844 * 1 2 3 24 24 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 25 25 H 1.08995 * 113.61563 * 25.44216 * 5 3 2 26 26 H 1.09003 * 113.61899 * 254.54535 * 5 3 2 27 27 H 1.09003 * 109.47071 * 152.49713 * 8 6 5 28 28 H 1.09004 * 109.47091 * 32.49669 * 8 6 5 29 29 H 0.97000 * 120.00429 * 359.97438 * 9 8 6 30 30 H 1.08000 * 123.35016 * 359.97406 * 13 12 10 31 31 H 1.09001 * 109.46953 * 90.02319 * 15 14 13 32 32 H 1.09000 * 109.47318 * 210.01917 * 15 14 13 33 33 H 1.09000 * 109.47161 * 330.02548 * 15 14 13 34 34 H 1.09001 * 109.48001 * 270.00329 * 17 16 14 35 35 H 0.96707 * 113.99684 * 179.97438 * 18 17 16 36 36 H 1.48495 * 110.00269 * 178.68453 * 19 17 16 37 37 H 1.48505 * 109.99861 * 300.00484 * 19 17 16 38 38 H 1.08998 * 113.61578 * 139.97728 * 21 6 5 39 39 H 1.09001 * 113.61331 * 270.88416 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 -0.6952 5 6 2.3004 2.3835 1.4068 6 6 3.5202 3.1752 0.9068 7 1 3.2654 4.1359 0.4593 8 6 4.6472 3.2796 1.9363 9 7 4.4190 4.4454 2.7935 10 6 5.2906 4.7380 3.7791 11 8 6.2668 4.0335 3.9572 12 6 5.0626 5.9049 4.6366 13 6 5.8701 6.3031 5.6645 14 6 5.4186 7.4331 6.3041 15 6 6.1508 8.0508 7.4675 16 6 4.2783 7.9409 5.8221 17 6 3.5928 9.1679 6.3656 18 8 4.5696 10.0572 6.9108 19 14 2.6715 10.0246 4.9916 20 16 3.7060 7.0160 4.5075 21 6 3.7284 2.0520 -0.1227 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 2.5388 1.6609 2.1872 26 1 1.4450 3.0112 1.6569 27 1 5.6013 3.3888 1.4207 28 1 4.6656 2.3772 2.5475 29 1 3.6412 5.0072 2.6514 30 1 6.7726 5.7814 5.9469 31 1 6.8675 8.7840 7.0977 32 1 5.4358 8.5424 8.1272 33 1 6.6787 7.2728 8.0190 34 1 2.8909 8.8762 7.1469 35 1 4.1988 10.8707 7.2793 36 1 1.9651 11.2187 5.5210 37 1 3.6173 10.4276 3.9200 38 1 4.0258 2.4120 -1.1076 39 1 4.3572 1.2387 0.2395 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:42 Heat of formation + Delta-G solvation = -12.536499 kcal Electronic energy + Delta-G solvation = -21006.368028 eV Core-core repulsion = 17748.172708 eV Total energy + Delta-G solvation = -3258.195321 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97341 -40.06458 -39.44084 -37.56408 -35.49224 -32.38945 -30.23982 -30.04093 -29.53550 -26.86920 -26.34242 -24.57792 -23.57597 -21.79730 -20.76357 -19.97957 -19.11493 -18.63466 -17.75053 -17.04534 -16.98192 -16.69927 -16.37123 -16.13050 -15.62727 -15.22693 -14.95880 -14.83247 -14.55284 -14.43662 -14.24484 -14.15184 -14.11758 -13.60690 -13.55758 -13.17921 -13.14567 -12.94911 -12.85810 -12.53212 -12.14705 -12.02069 -11.98223 -11.84609 -11.48742 -11.06602 -10.86617 -10.80852 -10.15688 -9.60040 -9.34667 -8.64940 -5.25770 -0.56583 0.29372 0.71303 0.72463 1.01890 1.36673 1.46844 1.57859 1.79959 2.06224 2.25059 3.06331 3.27888 3.31897 3.49979 3.57982 3.64126 3.80103 4.05306 4.12221 4.17217 4.19878 4.22665 4.26491 4.43753 4.53702 4.60967 4.62406 4.65638 4.73049 4.75620 4.83083 4.92085 4.93103 4.95130 5.08812 5.20926 5.36920 5.44563 5.51287 6.23561 6.38748 7.14844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.254 6.254 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.123 4.123 6 C -0.122 4.122 7 H 0.102 0.898 8 C 0.132 3.868 9 N -0.726 5.726 10 C 0.592 3.408 11 O -0.525 6.525 12 C -0.262 4.262 13 C -0.047 4.047 14 C -0.089 4.089 15 C -0.086 4.086 16 C -0.197 4.197 17 C -0.033 4.033 18 O -0.524 6.524 19 Si 0.658 3.342 20 S 0.201 5.799 21 C -0.100 4.100 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.399 0.601 30 H 0.155 0.845 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.382 0.618 36 H -0.242 1.242 37 H -0.242 1.242 38 H 0.083 0.917 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 2.986 -0.459 7.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.025 6.025 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.163 4.163 6 C -0.143 4.143 7 H 0.120 0.880 8 C 0.008 3.992 9 N -0.378 5.378 10 C 0.378 3.622 11 O -0.402 6.402 12 C -0.382 4.382 13 C -0.081 4.081 14 C -0.102 4.102 15 C -0.145 4.145 16 C -0.315 4.315 17 C -0.144 4.144 18 O -0.332 6.332 19 Si 0.556 3.444 20 S 0.469 5.531 21 C -0.139 4.139 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.233 0.767 30 H 0.173 0.827 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.230 0.770 36 H -0.166 1.166 37 H -0.166 1.166 38 H 0.102 0.898 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.055 1.911 -2.016 6.662 hybrid contribution 0.297 2.042 1.655 2.645 sum -5.758 3.953 -0.362 6.994 Atomic orbital electron populations 1.23372 0.94138 1.06624 1.04935 1.87004 1.07555 1.10358 1.97626 1.24674 1.01052 0.94309 1.01217 0.87580 1.23428 0.98108 0.99129 0.95656 1.22775 0.95710 0.99052 0.96725 0.87991 1.21414 0.98318 0.88217 0.91231 1.45827 1.27464 1.30653 1.33864 1.16921 0.82663 0.83044 0.79529 1.90867 1.28742 1.50257 1.70367 1.24572 1.03095 1.04112 1.06386 1.20723 0.99594 0.94929 0.92819 1.18704 0.95635 0.95633 1.00203 1.20519 0.99796 0.99819 0.94360 1.23265 1.02230 1.02758 1.03289 1.24023 0.94520 0.90910 1.04975 1.86691 1.34122 1.33335 1.79044 0.95573 0.82627 0.86852 0.79367 1.82559 1.24139 1.18639 1.27766 1.22763 0.93392 0.97869 0.99879 0.90394 0.90505 0.88086 0.88342 0.90712 0.90702 0.90577 0.76715 0.82701 0.90987 0.90364 0.92090 0.89471 0.76962 1.16551 1.16572 0.89833 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.17 10.76 101.05 1.09 1.26 16 2 S -0.25 -0.19 22.18 -107.50 -2.38 -2.58 16 3 C -0.08 0.13 4.27 -25.92 -0.11 0.02 16 4 H 0.11 -0.24 8.14 -51.93 -0.42 -0.67 16 5 C -0.12 0.30 7.22 -25.92 -0.19 0.11 16 6 C -0.12 0.35 3.75 -89.81 -0.34 0.01 16 7 H 0.10 -0.40 8.14 -51.93 -0.42 -0.83 16 8 C 0.13 -0.09 5.51 -4.05 -0.02 -0.11 16 9 N -0.73 0.16 5.55 -61.65 -0.34 -0.18 16 10 C 0.59 1.82 7.78 -12.89 -0.10 1.72 16 11 O -0.52 -3.61 16.84 5.19 0.09 -3.52 16 12 C -0.26 -0.51 6.45 -36.79 -0.24 -0.75 16 13 C -0.05 -0.12 9.80 -40.43 -0.40 -0.51 16 14 C -0.09 -0.16 5.75 -106.45 -0.61 -0.78 16 15 C -0.09 -0.08 8.71 36.01 0.31 0.24 16 16 C -0.20 -0.12 5.57 -35.86 -0.20 -0.32 16 17 C -0.03 0.04 2.75 36.01 0.10 0.14 16 18 O -0.52 0.39 9.80 -35.23 -0.35 0.05 16 19 Si 0.66 -1.19 31.31 -169.99 -5.32 -6.51 16 20 S 0.20 -0.18 19.79 -107.50 -2.13 -2.31 16 21 C -0.10 0.20 7.23 -25.92 -0.19 0.01 16 22 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 23 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 24 H 0.10 -0.17 8.14 -51.92 -0.42 -0.59 16 25 H 0.10 -0.13 7.86 -51.93 -0.41 -0.53 16 26 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 27 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.08 0.03 7.84 -51.93 -0.41 -0.38 16 29 H 0.40 -1.06 7.59 -40.82 -0.31 -1.37 16 30 H 0.16 0.36 8.06 -52.49 -0.42 -0.06 16 31 H 0.07 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.08 0.05 6.39 -51.93 -0.33 -0.28 16 33 H 0.06 0.01 8.13 -51.93 -0.42 -0.41 16 34 H 0.09 -0.27 7.96 -51.93 -0.41 -0.68 16 35 H 0.38 -1.78 8.74 45.56 0.40 -1.38 16 36 H -0.24 0.08 7.11 56.52 0.40 0.48 16 37 H -0.24 -0.41 7.11 56.52 0.40 -0.01 16 38 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 39 H 0.10 -0.10 8.06 -51.93 -0.42 -0.52 16 LS Contribution 349.15 15.07 5.26 5.26 Total: 0.00 -7.39 349.15 -11.80 -19.19 By element: Atomic # 1 Polarization: -4.69 SS G_CDS: -5.74 Total: -10.43 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.89 Total: 1.03 kcal Atomic # 7 Polarization: 0.16 SS G_CDS: -0.34 Total: -0.18 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: -0.26 Total: -3.48 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -5.32 Total: -6.51 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -4.51 Total: -4.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -7.39 -11.80 -19.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.655 kcal (2) G-P(sol) polarization free energy of solvation -7.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds