Wall clock time and date at job start Tue Mar 9 2021 12:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81398 * 103.00205 * 2 1 4 4 H 1.09002 * 112.84870 * 316.20022 * 3 2 1 5 5 C 1.53780 * 113.68967 * 87.46363 * 3 2 1 6 6 C 1.53784 * 87.08376 * 139.99328 * 5 3 2 7 7 H 1.09002 * 113.68787 * 89.12486 * 6 5 3 8 8 C 1.52995 * 113.61514 * 220.01813 * 6 5 3 9 9 N 1.46496 * 109.47185 * 272.49955 * 8 6 5 10 10 C 1.34784 * 120.00101 * 180.02562 * 9 8 6 11 11 O 1.21702 * 119.99710 * 359.97438 * 10 9 8 12 12 C 1.46580 * 120.00106 * 179.97438 * 10 9 8 13 13 C 1.36652 * 125.45587 * 179.97438 * 12 10 9 14 14 C 1.37472 * 113.29217 * 180.02562 * 13 12 10 15 15 C 1.50706 * 122.44556 * 179.97438 * 14 13 12 16 16 C 1.33811 * 115.10387 * 0.26540 * 14 13 12 17 17 C 1.50699 * 124.52248 * 179.72807 * 16 14 13 18 18 O 1.42902 * 109.46907 * 30.00580 * 17 16 14 19 19 Si 1.86300 * 109.47270 * 150.00040 * 17 16 14 20 20 S 1.70615 * 110.95504 * 359.58927 * 16 14 13 21 21 C 1.53776 * 87.07864 * 334.56892 * 6 5 3 22 22 H 1.09001 * 109.47380 * 299.99822 * 1 2 3 23 23 H 1.09010 * 109.46996 * 59.99844 * 1 2 3 24 24 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 25 25 H 1.08995 * 113.61563 * 25.44216 * 5 3 2 26 26 H 1.09003 * 113.61899 * 254.54535 * 5 3 2 27 27 H 1.09003 * 109.47071 * 152.49713 * 8 6 5 28 28 H 1.09004 * 109.47091 * 32.49669 * 8 6 5 29 29 H 0.97000 * 120.00429 * 359.97438 * 9 8 6 30 30 H 1.08000 * 123.35016 * 359.97406 * 13 12 10 31 31 H 1.09001 * 109.46953 * 90.02319 * 15 14 13 32 32 H 1.09000 * 109.47318 * 210.01917 * 15 14 13 33 33 H 1.09000 * 109.47161 * 330.02548 * 15 14 13 34 34 H 1.09001 * 109.48001 * 270.00329 * 17 16 14 35 35 H 0.96707 * 113.99684 * 179.97438 * 18 17 16 36 36 H 1.48495 * 110.00269 * 178.68453 * 19 17 16 37 37 H 1.48505 * 109.99861 * 300.00484 * 19 17 16 38 38 H 1.08998 * 113.61578 * 139.97728 * 21 6 5 39 39 H 1.09001 * 113.61331 * 270.88416 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 -0.6952 5 6 2.3004 2.3835 1.4068 6 6 3.5202 3.1752 0.9068 7 1 3.2654 4.1359 0.4593 8 6 4.6472 3.2796 1.9363 9 7 4.4190 4.4454 2.7935 10 6 5.2906 4.7380 3.7791 11 8 6.2668 4.0335 3.9572 12 6 5.0626 5.9049 4.6366 13 6 5.8701 6.3031 5.6645 14 6 5.4186 7.4331 6.3041 15 6 6.1508 8.0508 7.4675 16 6 4.2783 7.9409 5.8221 17 6 3.5928 9.1679 6.3656 18 8 4.5696 10.0572 6.9108 19 14 2.6715 10.0246 4.9916 20 16 3.7060 7.0160 4.5075 21 6 3.7284 2.0520 -0.1227 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 2.5388 1.6609 2.1872 26 1 1.4450 3.0112 1.6569 27 1 5.6013 3.3888 1.4207 28 1 4.6656 2.3772 2.5475 29 1 3.6412 5.0072 2.6514 30 1 6.7726 5.7814 5.9469 31 1 6.8675 8.7840 7.0977 32 1 5.4358 8.5424 8.1272 33 1 6.6787 7.2728 8.0190 34 1 2.8909 8.8762 7.1469 35 1 4.1988 10.8707 7.2793 36 1 1.9651 11.2187 5.5210 37 1 3.6173 10.4276 3.9200 38 1 4.0258 2.4120 -1.1076 39 1 4.3572 1.2387 0.2395 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:41 Heat of formation + Delta-G solvation = -9.295531 kcal Electronic energy + Delta-G solvation = -21006.227490 eV Core-core repulsion = 17748.172708 eV Total energy + Delta-G solvation = -3258.054782 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.08859 -40.01675 -39.46738 -37.51167 -35.64327 -32.45201 -30.24076 -29.96104 -29.49942 -26.71441 -26.34854 -24.54979 -23.56837 -21.92006 -20.66410 -19.99566 -19.15354 -18.57040 -17.73217 -17.04851 -17.00909 -16.71448 -16.38259 -16.14819 -15.63823 -15.17395 -14.96337 -14.87470 -14.54913 -14.49250 -14.20497 -14.12999 -14.01627 -13.48959 -13.43846 -13.22888 -13.14672 -12.95256 -12.80564 -12.57324 -12.14198 -12.02063 -11.89070 -11.77368 -11.34001 -11.25653 -10.81817 -10.75877 -10.27713 -9.60586 -9.34800 -8.68649 -5.12899 -0.65947 0.28511 0.67851 0.80613 1.05918 1.34087 1.53431 1.67411 1.89985 1.99679 2.06983 3.23402 3.40672 3.45612 3.62913 3.65133 3.78153 3.80550 4.11992 4.17166 4.33081 4.33558 4.34502 4.36318 4.41597 4.57025 4.62264 4.75151 4.78664 4.82347 4.85808 4.88557 4.89662 4.98987 4.99699 5.05033 5.24117 5.39421 5.43918 5.45177 6.33887 6.55438 7.01780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.322 6.322 3 C -0.071 4.071 4 H 0.120 0.880 5 C -0.119 4.119 6 C -0.106 4.106 7 H 0.125 0.875 8 C 0.132 3.868 9 N -0.710 5.710 10 C 0.589 3.411 11 O -0.574 6.574 12 C -0.288 4.288 13 C -0.062 4.062 14 C -0.111 4.111 15 C -0.082 4.082 16 C -0.206 4.206 17 C -0.042 4.042 18 O -0.542 6.542 19 Si 0.734 3.266 20 S 0.275 5.725 21 C -0.104 4.104 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.413 0.587 30 H 0.143 0.857 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.398 0.602 36 H -0.258 1.258 37 H -0.292 1.292 38 H 0.092 0.908 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.727 4.428 -0.765 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.093 6.093 3 C -0.200 4.200 4 H 0.138 0.862 5 C -0.159 4.159 6 C -0.126 4.126 7 H 0.143 0.857 8 C 0.008 3.992 9 N -0.361 5.361 10 C 0.376 3.624 11 O -0.456 6.456 12 C -0.408 4.408 13 C -0.097 4.097 14 C -0.124 4.124 15 C -0.141 4.141 16 C -0.325 4.325 17 C -0.152 4.152 18 O -0.353 6.353 19 Si 0.635 3.365 20 S 0.544 5.456 21 C -0.143 4.143 22 H 0.105 0.895 23 H 0.104 0.896 24 H 0.119 0.881 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.250 0.750 30 H 0.160 0.840 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.250 0.750 36 H -0.182 1.182 37 H -0.218 1.218 38 H 0.110 0.890 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.408 3.362 -2.320 9.348 hybrid contribution 0.983 1.669 1.723 2.592 sum -7.425 5.031 -0.598 8.989 Atomic orbital electron populations 1.23366 0.91617 1.06986 1.05803 1.87248 1.10550 1.13757 1.97792 1.24734 1.01129 0.92028 1.02065 0.86166 1.23378 0.98778 0.98906 0.94817 1.22709 0.94498 0.99780 0.95629 0.85667 1.21415 0.98975 0.87426 0.91340 1.45721 1.27116 1.30584 1.32706 1.17169 0.82367 0.82968 0.79930 1.90833 1.30858 1.52023 1.71849 1.24617 1.04946 1.04770 1.06431 1.20747 0.99725 0.95570 0.93609 1.18767 0.96634 0.95933 1.01030 1.20473 0.99701 0.99598 0.94291 1.23734 1.01946 1.03338 1.03511 1.24285 0.94477 0.90270 1.06159 1.86656 1.34982 1.34385 1.79237 0.94818 0.80044 0.85573 0.76064 1.82165 1.21370 1.16180 1.25881 1.22787 0.93215 0.97782 1.00510 0.89485 0.89575 0.88053 0.89812 0.88854 0.91654 0.92004 0.75020 0.83956 0.91844 0.89841 0.92014 0.86881 0.75032 1.18241 1.21840 0.88988 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.35 10.76 113.37 1.22 1.57 16 2 S -0.32 -0.69 22.18 -56.49 -1.25 -1.94 16 3 C -0.07 0.27 4.27 31.12 0.13 0.41 16 4 H 0.12 -0.78 8.14 -2.39 -0.02 -0.80 16 5 C -0.12 0.69 7.22 31.12 0.22 0.92 16 6 C -0.11 0.70 3.75 -10.27 -0.04 0.66 16 7 H 0.13 -1.33 8.14 -2.39 -0.02 -1.34 16 8 C 0.13 -0.10 5.51 86.38 0.48 0.37 16 9 N -0.71 0.29 5.55 -467.17 -2.59 -2.31 16 10 C 0.59 4.37 7.78 86.42 0.67 5.05 16 11 O -0.57 -9.41 16.84 -4.35 -0.07 -9.49 16 12 C -0.29 -1.35 6.45 24.08 0.16 -1.19 16 13 C -0.06 -0.41 9.80 21.72 0.21 -0.20 16 14 C -0.11 -0.48 5.75 -21.05 -0.12 -0.60 16 15 C -0.08 -0.22 8.71 71.24 0.62 0.40 16 16 C -0.21 -0.11 5.57 24.68 0.14 0.03 16 17 C -0.04 0.17 2.75 71.24 0.20 0.36 16 18 O -0.54 1.30 9.80 -148.98 -1.46 -0.16 16 19 Si 0.73 -3.73 31.31 68.60 2.15 -1.58 16 20 S 0.28 -0.83 19.79 -56.49 -1.12 -1.94 16 21 C -0.10 0.41 7.23 31.12 0.22 0.64 16 22 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 23 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 24 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 25 H 0.08 -0.19 7.86 -2.39 -0.02 -0.20 16 26 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 27 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.06 0.15 7.84 -2.38 -0.02 0.14 16 29 H 0.41 -2.77 7.59 -92.71 -0.70 -3.47 16 30 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 31 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.08 0.10 6.39 -2.39 -0.02 0.09 16 33 H 0.06 0.11 8.13 -2.39 -0.02 0.09 16 34 H 0.11 -0.99 7.96 -2.39 -0.02 -1.01 16 35 H 0.40 -4.20 8.74 -74.05 -0.65 -4.85 16 36 H -0.26 0.60 7.11 99.48 0.71 1.30 16 37 H -0.29 -0.98 7.11 99.48 0.71 -0.27 16 38 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.08 -0.06 8.06 -2.39 -0.02 -0.08 16 Total: 0.00 -20.20 349.15 -0.48 -20.68 By element: Atomic # 1 Polarization: -11.42 SS G_CDS: -0.25 Total: -11.66 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 4.11 Total: 8.41 kcal Atomic # 7 Polarization: 0.29 SS G_CDS: -2.59 Total: -2.31 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -1.53 Total: -9.65 kcal Atomic # 14 Polarization: -3.73 SS G_CDS: 2.15 Total: -1.58 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.37 Total: -3.89 kcal Total: -20.20 -0.48 -20.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.383 kcal (2) G-P(sol) polarization free energy of solvation -20.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds