Wall clock time and date at job start Tue Mar 9 2021 12:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81403 * 102.99871 * 2 1 4 4 H 1.09010 * 112.90479 * 43.75278 * 3 2 1 5 5 C 1.53785 * 113.61397 * 174.99923 * 3 2 1 6 6 C 1.53780 * 87.08116 * 139.98535 * 5 3 2 7 7 H 1.09003 * 113.61396 * 89.19625 * 6 5 3 8 8 C 1.52995 * 113.61239 * 220.02041 * 6 5 3 9 9 N 1.46501 * 109.46900 * 184.99653 * 8 6 5 10 10 C 1.34780 * 119.99790 * 179.97438 * 9 8 6 11 11 O 1.21629 * 120.00270 * 0.02562 * 10 9 8 12 12 C 1.47190 * 119.99739 * 180.02562 * 10 9 8 13 13 C 1.36011 * 123.46178 * 0.24420 * 12 10 9 14 14 S 1.70453 * 110.81620 * 180.25690 * 13 12 10 15 15 C 1.75507 * 92.44288 * 359.72143 * 14 13 12 16 16 C 1.50706 * 124.71085 * 179.97438 * 15 14 13 17 17 O 1.42901 * 109.46940 * 120.00009 * 16 15 14 18 18 Si 1.86298 * 109.46915 * 0.02562 * 16 15 14 19 19 C 1.32770 * 110.57740 * 359.97438 * 15 14 13 20 20 C 1.53770 * 113.61881 * 272.49644 * 3 2 1 21 21 H 1.08998 * 109.47316 * 299.99878 * 1 2 3 22 22 H 1.09007 * 109.47386 * 59.99765 * 1 2 3 23 23 H 1.09002 * 109.46790 * 179.97438 * 1 2 3 24 24 H 1.08997 * 113.61200 * 25.43268 * 5 3 2 25 25 H 1.09007 * 113.68699 * 254.54363 * 5 3 2 26 26 H 1.09000 * 109.47407 * 65.00212 * 8 6 5 27 27 H 1.08994 * 109.47285 * 304.99626 * 8 6 5 28 28 H 0.96998 * 120.00214 * 0.02562 * 9 8 6 29 29 H 1.07999 * 124.59229 * 359.97438 * 13 12 10 30 30 H 1.08990 * 109.47428 * 240.00233 * 16 15 14 31 31 H 0.96704 * 114.00312 * 300.00326 * 17 16 15 32 32 H 1.48505 * 110.00453 * 58.67972 * 18 16 15 33 33 H 1.48500 * 110.00055 * 179.97438 * 18 16 15 34 34 H 1.08002 * 123.45547 * 179.97438 * 19 15 14 35 35 H 1.09003 * 113.61422 * 105.46855 * 20 3 2 36 36 H 1.09001 * 113.61496 * 334.57012 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6107 2.3441 0.6944 5 6 3.7283 2.0520 0.1228 6 6 3.5206 3.1739 -0.9082 7 1 3.2656 4.1352 -0.4621 8 6 4.6478 3.2767 -1.9375 9 7 4.4201 4.4414 -2.7965 10 6 5.2919 4.7326 -3.7822 11 8 6.2675 4.0282 -3.9589 12 6 5.0633 5.9031 -4.6448 13 6 4.0002 6.7402 -4.5069 14 16 4.0495 7.9796 -5.6760 15 6 5.5417 7.3692 -6.3693 16 6 6.2620 7.9904 -7.5383 17 8 7.5775 8.3775 -7.1361 18 14 5.3240 9.4916 -8.1191 19 6 5.9479 6.2841 -5.7210 20 6 2.3008 2.3816 -1.4075 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 4.3572 1.2382 -0.2381 25 1 4.0269 2.4133 1.1070 26 1 4.6664 2.3736 -2.5475 27 1 5.6018 3.3866 -1.4219 28 1 3.6422 5.0035 -2.6553 29 1 3.2269 6.6314 -3.7609 30 1 6.3286 7.2666 -8.3504 31 1 7.5948 9.0217 -6.4151 32 1 5.1991 10.4726 -7.0112 33 1 6.0243 10.1138 -9.2713 34 1 6.8448 5.7390 -5.9759 35 1 1.4456 3.0091 -1.6587 36 1 2.5394 1.6580 -2.1869 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_6894386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:43 Heat of formation + Delta-G solvation = -9.666322 kcal Electronic energy + Delta-G solvation = -19082.758832 eV Core-core repulsion = 15980.225591 eV Total energy + Delta-G solvation = -3102.533242 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.15470 -39.88386 -38.84445 -37.19227 -35.64309 -32.02691 -29.93374 -29.35650 -26.96660 -26.73298 -25.68879 -23.76677 -22.09600 -20.98095 -20.18132 -19.07026 -18.11798 -17.93482 -17.32499 -16.85156 -16.59300 -16.39845 -16.17292 -15.71087 -15.25847 -15.01114 -14.86607 -14.44526 -14.27895 -14.06693 -14.03015 -13.65685 -13.54653 -13.50358 -13.44306 -12.80788 -12.65323 -12.42689 -11.96407 -11.85569 -11.74325 -11.36612 -11.05748 -10.80383 -10.75031 -10.25916 -9.96760 -9.43222 -8.71620 -5.04600 -0.33135 0.40345 0.70391 0.77720 0.81919 1.23098 1.56603 1.64574 1.91333 2.09437 2.26203 3.29655 3.38930 3.43632 3.59866 3.63378 3.77948 3.93990 3.98822 4.15519 4.30017 4.30921 4.31772 4.33699 4.50464 4.60688 4.71722 4.74059 4.75350 4.81787 4.86117 4.95781 5.00642 5.03522 5.17450 5.28267 5.44349 6.40499 6.45663 7.14093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.322 6.322 3 C -0.071 4.071 4 H 0.120 0.880 5 C -0.105 4.105 6 C -0.103 4.103 7 H 0.126 0.874 8 C 0.132 3.868 9 N -0.707 5.707 10 C 0.572 3.428 11 O -0.588 6.588 12 C -0.183 4.183 13 C -0.189 4.189 14 S 0.254 5.746 15 C -0.246 4.246 16 C -0.048 4.048 17 O -0.545 6.545 18 Si 0.733 3.267 19 C -0.078 4.078 20 C -0.118 4.118 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.416 0.584 29 H 0.207 0.793 30 H 0.129 0.871 31 H 0.388 0.612 32 H -0.250 1.250 33 H -0.278 1.278 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 5.361 1.744 10.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.094 6.094 3 C -0.200 4.200 4 H 0.138 0.862 5 C -0.144 4.144 6 C -0.123 4.123 7 H 0.144 0.856 8 C 0.009 3.991 9 N -0.359 5.359 10 C 0.359 3.641 11 O -0.470 6.470 12 C -0.201 4.201 13 C -0.327 4.327 14 S 0.520 5.480 15 C -0.363 4.363 16 C -0.159 4.159 17 O -0.354 6.354 18 Si 0.633 3.367 19 C -0.107 4.107 20 C -0.158 4.158 21 H 0.104 0.896 22 H 0.105 0.895 23 H 0.120 0.880 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.254 0.746 29 H 0.223 0.777 30 H 0.146 0.854 31 H 0.238 0.762 32 H -0.175 1.175 33 H -0.203 1.203 34 H 0.148 0.852 35 H 0.111 0.889 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.685 5.603 0.750 10.363 hybrid contribution 1.048 -0.399 1.243 1.674 sum -7.637 5.204 1.994 9.454 Atomic orbital electron populations 1.23367 0.91584 1.07020 1.05785 1.87265 1.10580 1.13757 1.97792 1.24739 1.01117 0.92051 1.02076 0.86165 1.22793 0.93189 0.97886 1.00566 1.22682 0.94413 0.99676 0.95531 0.85634 1.21342 0.98719 0.87757 0.91332 1.45664 1.27395 1.30322 1.32509 1.17965 0.82088 0.83868 0.80199 1.90799 1.31247 1.52842 1.72078 1.20079 0.99013 0.99525 1.01492 1.26194 1.01856 0.99464 1.05175 1.82930 1.18018 1.24934 1.22098 1.24834 1.03207 1.02572 1.05703 1.24761 0.86882 1.08552 0.95658 1.86612 1.26196 1.64758 1.57789 0.94458 0.86718 0.75620 0.79885 1.20977 0.99535 0.95926 0.94297 1.23357 0.98766 0.98897 0.94744 0.89553 0.89526 0.88009 0.90150 0.89012 0.92511 0.92085 0.74627 0.77654 0.85385 0.76214 1.17511 1.20330 0.85249 0.88946 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.34 10.76 113.37 1.22 1.56 16 2 S -0.32 -0.75 22.17 -56.49 -1.25 -2.01 16 3 C -0.07 0.27 4.28 31.12 0.13 0.40 16 4 H 0.12 -0.77 8.14 -2.38 -0.02 -0.79 16 5 C -0.10 0.40 7.23 31.12 0.23 0.63 16 6 C -0.10 0.70 3.75 -10.27 -0.04 0.66 16 7 H 0.13 -1.40 8.14 -2.39 -0.02 -1.42 16 8 C 0.13 -0.11 5.51 86.38 0.48 0.36 16 9 N -0.71 1.21 5.52 -466.61 -2.58 -1.37 16 10 C 0.57 3.78 7.79 86.59 0.67 4.46 16 11 O -0.59 -9.94 16.80 -4.12 -0.07 -10.01 16 12 C -0.18 -0.44 5.98 -19.87 -0.12 -0.56 16 13 C -0.19 1.06 10.38 67.30 0.70 1.76 16 14 S 0.25 -1.56 20.18 -56.49 -1.14 -2.70 16 15 C -0.25 0.07 5.68 24.51 0.14 0.21 16 16 C -0.05 0.03 2.95 71.24 0.21 0.24 16 17 O -0.55 -1.69 12.85 -148.98 -1.91 -3.61 16 18 Si 0.73 -2.81 30.91 68.60 2.12 -0.69 16 19 C -0.08 -0.38 9.91 22.67 0.22 -0.16 16 20 C -0.12 0.69 7.22 31.12 0.22 0.92 16 21 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 22 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 23 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 24 H 0.08 -0.03 8.06 -2.39 -0.02 -0.04 16 25 H 0.09 -0.50 8.14 -2.38 -0.02 -0.51 16 26 H 0.06 0.18 7.84 -2.39 -0.02 0.16 16 27 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.42 -3.89 6.97 -92.71 -0.65 -4.54 16 29 H 0.21 -2.81 7.01 -2.91 -0.02 -2.83 16 30 H 0.13 -0.19 7.96 -2.39 -0.02 -0.21 16 31 H 0.39 -1.23 8.70 -74.05 -0.64 -1.87 16 32 H -0.25 0.49 7.11 99.48 0.71 1.19 16 33 H -0.28 -0.93 7.11 99.48 0.71 -0.23 16 34 H 0.13 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 36 H 0.08 -0.16 7.85 -2.39 -0.02 -0.18 16 Total: 0.00 -21.09 331.68 -0.92 -22.01 By element: Atomic # 1 Polarization: -11.95 SS G_CDS: -0.15 Total: -12.10 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 4.07 Total: 10.48 kcal Atomic # 7 Polarization: 1.21 SS G_CDS: -2.58 Total: -1.37 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -1.98 Total: -13.62 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: 2.12 Total: -0.69 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.39 Total: -4.70 kcal Total: -21.09 -0.92 -22.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_6894386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.344 kcal (2) G-P(sol) polarization free energy of solvation -21.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds