Wall clock time and date at job start Tue Mar 9 2021 12:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81406 * 103.00101 * 2 1 4 4 H 1.09004 * 112.84941 * 43.79790 * 3 2 1 5 5 C 1.53777 * 113.61526 * 174.99823 * 3 2 1 6 6 C 1.53781 * 87.07807 * 140.06443 * 5 3 2 7 7 H 1.09003 * 113.61540 * 89.20228 * 6 5 3 8 8 C 1.52998 * 113.61380 * 220.01819 * 6 5 3 9 9 N 1.46500 * 109.47156 * 185.00156 * 8 6 5 10 10 C 1.34785 * 119.99956 * 179.97438 * 9 8 6 11 11 O 1.21272 * 120.00006 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99678 * 179.97438 * 10 9 8 13 13 N 1.46507 * 109.46822 * 180.02562 * 12 10 9 14 14 C 1.36837 * 125.06008 * 265.31519 * 13 12 10 15 15 C 1.34238 * 109.93192 * 180.13684 * 14 13 12 16 16 C 1.50693 * 126.49597 * 179.87185 * 15 14 13 17 17 O 1.42907 * 109.47661 * 104.68666 * 16 15 14 18 18 Si 1.86298 * 109.47618 * 344.68356 * 16 15 14 19 19 C 1.46492 * 107.00223 * 359.60333 * 15 14 13 20 20 C 1.39582 * 134.03159 * 180.24199 * 19 15 14 21 21 C 1.36663 * 119.76275 * 179.97438 * 20 19 15 22 22 C 1.38785 * 120.52708 * 0.04289 * 21 20 19 23 23 C 1.37785 * 120.66816 * 359.97173 * 22 21 20 24 24 C 1.37687 * 125.05923 * 84.99883 * 13 12 10 25 25 C 1.53774 * 87.08524 * 334.56732 * 6 5 3 26 26 H 1.08996 * 109.46772 * 299.99966 * 1 2 3 27 27 H 1.09001 * 109.46898 * 60.00258 * 1 2 3 28 28 H 1.09003 * 109.46576 * 179.97438 * 1 2 3 29 29 H 1.09000 * 113.61645 * 25.52168 * 5 3 2 30 30 H 1.08995 * 113.61738 * 254.61018 * 5 3 2 31 31 H 1.09000 * 109.47374 * 65.00258 * 8 6 5 32 32 H 1.09002 * 109.47449 * 304.99631 * 8 6 5 33 33 H 0.96997 * 120.00106 * 0.02562 * 9 8 6 34 34 H 1.08996 * 109.47378 * 60.00375 * 12 10 9 35 35 H 1.08996 * 109.47337 * 299.99903 * 12 10 9 36 36 H 1.07998 * 125.03148 * 359.97438 * 14 13 12 37 37 H 1.09000 * 109.46936 * 224.68289 * 16 15 14 38 38 H 0.96697 * 114.00527 * 179.97438 * 17 16 15 39 39 H 1.48506 * 109.99834 * 298.68714 * 18 16 15 40 40 H 1.48502 * 110.00011 * 59.99978 * 18 16 15 41 41 H 1.08004 * 120.11997 * 359.97438 * 20 19 15 42 42 H 1.08000 * 119.73734 * 180.02562 * 21 20 19 43 43 H 1.08001 * 119.66747 * 180.02562 * 22 21 20 44 44 H 1.08004 * 120.11441 * 180.02562 * 23 22 21 45 45 H 1.09006 * 113.61790 * 139.97822 * 25 6 5 46 46 H 1.09002 * 113.61449 * 270.88613 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7676 0.0000 4 1 1.6109 2.3431 0.6952 5 6 3.7284 2.0520 0.1228 6 6 3.5202 3.1752 -0.9067 7 1 3.2654 4.1360 -0.4592 8 6 4.6472 3.2796 -1.9361 9 7 4.4191 4.4455 -2.7934 10 6 5.2907 4.7382 -3.7790 11 8 6.2635 4.0361 -3.9564 12 6 5.0557 5.9372 -4.6611 13 7 6.1350 6.0372 -5.6468 14 6 7.2616 6.8007 -5.5041 15 6 8.0435 6.6695 -6.5873 16 6 9.3693 7.3459 -6.8229 17 8 10.4257 6.4014 -6.6374 18 14 9.5732 8.7504 -5.6160 19 6 7.3667 5.7391 -7.4941 20 6 7.6735 5.2120 -8.7496 21 6 6.8083 4.3405 -9.3494 22 6 5.6262 3.9757 -8.7204 23 6 5.3035 4.4843 -7.4812 24 6 6.1696 5.3722 -6.8520 25 6 2.3004 2.3836 -1.4069 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 4.3573 1.2388 -0.2395 30 1 4.0259 2.4121 1.1077 31 1 4.6658 2.3773 -2.5474 32 1 5.6013 3.3890 -1.4206 33 1 3.6412 5.0073 -2.6512 34 1 5.0364 6.8396 -4.0502 35 1 4.1019 5.8273 -5.1771 36 1 7.4868 7.4194 -4.6481 37 1 9.4035 7.7338 -7.8409 38 1 11.3099 6.7683 -6.7738 39 1 8.4990 9.7553 -5.8200 40 1 9.5284 8.2346 -4.2242 41 1 8.5913 5.4918 -9.2454 42 1 7.0463 3.9325 -10.3206 43 1 4.9527 3.2856 -9.2068 44 1 4.3813 4.1940 -6.9996 45 1 1.4450 3.0113 -1.6569 46 1 2.5390 1.6610 -2.1873 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18360570_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:52 Heat of formation + Delta-G solvation = 31.360091 kcal Electronic energy + Delta-G solvation = -27427.717370 eV Core-core repulsion = 23604.857491 eV Total energy + Delta-G solvation = -3822.859879 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.47562 -40.91958 -39.83745 -37.94377 -37.49343 -35.63303 -34.14853 -31.55631 -30.26734 -30.13288 -29.83094 -28.39333 -26.94215 -25.66556 -24.22127 -23.55133 -22.54959 -21.77966 -20.75474 -20.41697 -18.73386 -18.25601 -18.14759 -17.69488 -17.46538 -16.97380 -16.67248 -16.37535 -16.31797 -15.68205 -15.41229 -15.25015 -15.20442 -14.83588 -14.70160 -14.62850 -14.37004 -14.34197 -14.19930 -14.01904 -13.69119 -13.64863 -13.47724 -13.44373 -12.90527 -12.62534 -12.44206 -12.35342 -12.09799 -11.96860 -11.89843 -11.63217 -11.57629 -11.09018 -10.88251 -10.41935 -10.25511 -10.08994 -9.02247 -8.71031 -8.53237 -4.96578 0.27255 0.65920 0.79888 1.36567 1.38217 1.41218 1.51746 1.66855 1.76227 2.02829 2.09639 3.09694 3.18562 3.22522 3.39342 3.46744 3.52826 3.55082 3.68159 3.76125 3.81856 3.85982 3.94731 4.10585 4.11742 4.13175 4.14554 4.32393 4.37042 4.43980 4.46044 4.51990 4.56860 4.65088 4.69726 4.71015 4.75153 4.78469 4.84031 4.90701 4.99383 5.11018 5.25089 5.26141 5.64834 5.80350 5.85850 5.89548 6.13680 6.30071 6.37042 6.84220 7.01270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.253 6.253 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.100 4.100 6 C -0.121 4.121 7 H 0.101 0.899 8 C 0.131 3.869 9 N -0.728 5.728 10 C 0.488 3.512 11 O -0.510 6.510 12 C 0.092 3.908 13 N -0.466 5.466 14 C 0.065 3.935 15 C -0.151 4.151 16 C -0.033 4.033 17 O -0.545 6.545 18 Si 0.683 3.317 19 C -0.085 4.085 20 C -0.063 4.063 21 C -0.145 4.145 22 C -0.096 4.096 23 C -0.127 4.127 24 C 0.109 3.891 25 C -0.123 4.123 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.402 0.598 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.162 0.838 37 H 0.070 0.930 38 H 0.377 0.623 39 H -0.256 1.256 40 H -0.255 1.255 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 5.120 1.383 6.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.024 6.024 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.140 4.140 6 C -0.141 4.141 7 H 0.119 0.881 8 C 0.008 3.992 9 N -0.381 5.381 10 C 0.272 3.728 11 O -0.384 6.384 12 C -0.034 4.034 13 N -0.149 5.149 14 C -0.060 4.060 15 C -0.159 4.159 16 C -0.144 4.144 17 O -0.351 6.351 18 Si 0.584 3.416 19 C -0.089 4.089 20 C -0.082 4.082 21 C -0.164 4.164 22 C -0.115 4.115 23 C -0.148 4.148 24 C 0.005 3.995 25 C -0.163 4.163 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.236 0.764 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.179 0.821 37 H 0.088 0.912 38 H 0.224 0.776 39 H -0.181 1.181 40 H -0.179 1.179 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.133 0.867 45 H 0.092 0.908 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.418 3.730 2.310 5.562 hybrid contribution -1.808 0.851 0.126 2.003 sum -5.226 4.581 2.436 7.365 Atomic orbital electron populations 1.23376 0.94097 1.06685 1.04920 1.87029 1.07585 1.10184 1.97616 1.24668 1.01027 0.94452 1.01135 0.87584 1.22765 0.93430 0.97878 0.99885 1.22761 0.95650 0.99002 0.96704 0.88066 1.21393 0.98217 0.88362 0.91261 1.45931 1.27700 1.30652 1.33859 1.20991 0.83465 0.86967 0.81384 1.90837 1.28216 1.50143 1.69164 1.21587 0.91667 0.98765 0.91427 1.43165 1.17984 1.39135 1.14639 1.21403 0.87544 0.98137 0.98934 1.19536 0.96464 1.04244 0.95610 1.23939 0.85471 0.98447 1.06542 1.86577 1.16477 1.38318 1.93695 0.95288 0.89340 0.78125 0.78884 1.18927 0.94213 1.00132 0.95661 1.20281 0.99021 0.95952 0.92923 1.20672 0.95053 0.99972 1.00733 1.20829 0.97194 0.99358 0.94122 1.19952 0.99313 0.99157 0.96347 1.18171 0.97294 0.97772 0.86281 1.23419 0.98019 0.99111 0.95721 0.90474 0.90436 0.88012 0.88571 0.89821 0.90799 0.90951 0.76427 0.86150 0.86300 0.82091 0.91237 0.77570 1.18075 1.17912 0.85867 0.85791 0.85619 0.86681 0.90820 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.16 10.76 101.05 1.09 1.25 16 2 S -0.25 -0.22 22.18 -107.50 -2.38 -2.60 16 3 C -0.08 0.13 4.27 -25.92 -0.11 0.02 16 4 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 5 C -0.10 0.19 7.23 -25.92 -0.19 0.01 16 6 C -0.12 0.38 3.75 -89.81 -0.34 0.04 16 7 H 0.10 -0.44 8.14 -51.93 -0.42 -0.87 16 8 C 0.13 -0.14 5.51 -4.04 -0.02 -0.16 16 9 N -0.73 1.40 5.56 -60.29 -0.33 1.06 16 10 C 0.49 0.70 7.90 -10.98 -0.09 0.61 16 11 O -0.51 -3.58 16.42 5.56 0.09 -3.49 16 12 C 0.09 -0.08 6.48 -5.19 -0.03 -0.12 16 13 N -0.47 -1.56 2.27 -115.71 -0.26 -1.83 16 14 C 0.06 0.26 9.89 -16.73 -0.17 0.09 16 15 C -0.15 -0.74 5.61 -102.71 -0.58 -1.31 16 16 C -0.03 -0.06 3.05 36.00 0.11 0.05 16 17 O -0.55 -1.42 12.86 -35.23 -0.45 -1.87 16 18 Si 0.68 -0.16 30.80 -169.99 -5.24 -5.39 16 19 C -0.09 -0.49 6.35 -105.14 -0.67 -1.16 16 20 C -0.06 -0.28 10.05 -39.65 -0.40 -0.68 16 21 C -0.15 -0.46 9.97 -39.95 -0.40 -0.86 16 22 C -0.10 -0.28 10.01 -39.55 -0.40 -0.67 16 23 C -0.13 -0.45 10.00 -39.43 -0.39 -0.85 16 24 C 0.11 0.55 6.80 -83.99 -0.57 -0.02 16 25 C -0.12 0.32 7.22 -25.92 -0.19 0.13 16 26 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 27 H 0.08 -0.15 8.14 -51.92 -0.42 -0.58 16 28 H 0.10 -0.17 8.14 -51.92 -0.42 -0.59 16 29 H 0.10 -0.08 8.06 -51.93 -0.42 -0.50 16 30 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 31 H 0.07 0.04 7.84 -51.93 -0.41 -0.36 16 32 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.40 -2.09 8.47 -40.82 -0.35 -2.44 16 34 H 0.12 -0.49 8.12 -51.93 -0.42 -0.91 16 35 H 0.12 -0.41 8.14 -51.93 -0.42 -0.84 16 36 H 0.16 0.32 6.30 -52.49 -0.33 -0.01 16 37 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 38 H 0.38 -1.10 8.74 45.56 0.40 -0.70 16 39 H -0.26 -0.47 7.11 56.52 0.40 -0.07 16 40 H -0.25 -0.68 7.04 56.52 0.40 -0.28 16 41 H 0.12 0.35 8.06 -52.48 -0.42 -0.07 16 42 H 0.12 0.12 8.06 -52.49 -0.42 -0.31 16 43 H 0.13 0.06 8.06 -52.49 -0.42 -0.36 16 44 H 0.12 0.17 8.06 -52.48 -0.42 -0.25 16 45 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 46 H 0.10 -0.13 7.86 -51.93 -0.41 -0.53 16 LS Contribution 397.96 15.07 6.00 6.00 Total: 0.00 -11.80 397.96 -12.96 -24.76 By element: Atomic # 1 Polarization: -5.96 SS G_CDS: -7.04 Total: -13.00 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -3.34 Total: -3.64 kcal Atomic # 7 Polarization: -0.17 SS G_CDS: -0.60 Total: -0.76 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.36 Total: -5.36 kcal Atomic # 14 Polarization: -0.16 SS G_CDS: -5.24 Total: -5.39 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -2.38 Total: -2.60 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -11.80 -12.96 -24.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.120 kcal (2) G-P(sol) polarization free energy of solvation -11.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds