Wall clock time and date at job start Tue Mar 9 2021 12:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81406 * 103.00101 * 2 1 4 4 H 1.09004 * 112.84941 * 43.79790 * 3 2 1 5 5 C 1.53777 * 113.61526 * 174.99823 * 3 2 1 6 6 C 1.53781 * 87.07807 * 140.06443 * 5 3 2 7 7 H 1.09003 * 113.61540 * 89.20228 * 6 5 3 8 8 C 1.52998 * 113.61380 * 220.01819 * 6 5 3 9 9 N 1.46500 * 109.47156 * 185.00156 * 8 6 5 10 10 C 1.34785 * 119.99956 * 179.97438 * 9 8 6 11 11 O 1.21272 * 120.00006 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99678 * 179.97438 * 10 9 8 13 13 N 1.46507 * 109.46822 * 180.02562 * 12 10 9 14 14 C 1.36837 * 125.06008 * 265.31519 * 13 12 10 15 15 C 1.34238 * 109.93192 * 180.13684 * 14 13 12 16 16 C 1.50693 * 126.49597 * 179.87185 * 15 14 13 17 17 O 1.42907 * 109.47661 * 104.68666 * 16 15 14 18 18 Si 1.86298 * 109.47618 * 344.68356 * 16 15 14 19 19 C 1.46492 * 107.00223 * 359.60333 * 15 14 13 20 20 C 1.39582 * 134.03159 * 180.24199 * 19 15 14 21 21 C 1.36663 * 119.76275 * 179.97438 * 20 19 15 22 22 C 1.38785 * 120.52708 * 0.04289 * 21 20 19 23 23 C 1.37785 * 120.66816 * 359.97173 * 22 21 20 24 24 C 1.37687 * 125.05923 * 84.99883 * 13 12 10 25 25 C 1.53774 * 87.08524 * 334.56732 * 6 5 3 26 26 H 1.08996 * 109.46772 * 299.99966 * 1 2 3 27 27 H 1.09001 * 109.46898 * 60.00258 * 1 2 3 28 28 H 1.09003 * 109.46576 * 179.97438 * 1 2 3 29 29 H 1.09000 * 113.61645 * 25.52168 * 5 3 2 30 30 H 1.08995 * 113.61738 * 254.61018 * 5 3 2 31 31 H 1.09000 * 109.47374 * 65.00258 * 8 6 5 32 32 H 1.09002 * 109.47449 * 304.99631 * 8 6 5 33 33 H 0.96997 * 120.00106 * 0.02562 * 9 8 6 34 34 H 1.08996 * 109.47378 * 60.00375 * 12 10 9 35 35 H 1.08996 * 109.47337 * 299.99903 * 12 10 9 36 36 H 1.07998 * 125.03148 * 359.97438 * 14 13 12 37 37 H 1.09000 * 109.46936 * 224.68289 * 16 15 14 38 38 H 0.96697 * 114.00527 * 179.97438 * 17 16 15 39 39 H 1.48506 * 109.99834 * 298.68714 * 18 16 15 40 40 H 1.48502 * 110.00011 * 59.99978 * 18 16 15 41 41 H 1.08004 * 120.11997 * 359.97438 * 20 19 15 42 42 H 1.08000 * 119.73734 * 180.02562 * 21 20 19 43 43 H 1.08001 * 119.66747 * 180.02562 * 22 21 20 44 44 H 1.08004 * 120.11441 * 180.02562 * 23 22 21 45 45 H 1.09006 * 113.61790 * 139.97822 * 25 6 5 46 46 H 1.09002 * 113.61449 * 270.88613 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7676 0.0000 4 1 1.6109 2.3431 0.6952 5 6 3.7284 2.0520 0.1228 6 6 3.5202 3.1752 -0.9067 7 1 3.2654 4.1360 -0.4592 8 6 4.6472 3.2796 -1.9361 9 7 4.4191 4.4455 -2.7934 10 6 5.2907 4.7382 -3.7790 11 8 6.2635 4.0361 -3.9564 12 6 5.0557 5.9372 -4.6611 13 7 6.1350 6.0372 -5.6468 14 6 7.2616 6.8007 -5.5041 15 6 8.0435 6.6695 -6.5873 16 6 9.3693 7.3459 -6.8229 17 8 10.4257 6.4014 -6.6374 18 14 9.5732 8.7504 -5.6160 19 6 7.3667 5.7391 -7.4941 20 6 7.6735 5.2120 -8.7496 21 6 6.8083 4.3405 -9.3494 22 6 5.6262 3.9757 -8.7204 23 6 5.3035 4.4843 -7.4812 24 6 6.1696 5.3722 -6.8520 25 6 2.3004 2.3836 -1.4069 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 4.3573 1.2388 -0.2395 30 1 4.0259 2.4121 1.1077 31 1 4.6658 2.3773 -2.5474 32 1 5.6013 3.3890 -1.4206 33 1 3.6412 5.0073 -2.6512 34 1 5.0364 6.8396 -4.0502 35 1 4.1019 5.8273 -5.1771 36 1 7.4868 7.4194 -4.6481 37 1 9.4035 7.7338 -7.8409 38 1 11.3099 6.7683 -6.7738 39 1 8.4990 9.7553 -5.8200 40 1 9.5284 8.2346 -4.2242 41 1 8.5913 5.4918 -9.2454 42 1 7.0463 3.9325 -10.3206 43 1 4.9527 3.2856 -9.2068 44 1 4.3813 4.1940 -6.9996 45 1 1.4450 3.0113 -1.6569 46 1 2.5390 1.6610 -2.1873 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18360570_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:51 Heat of formation + Delta-G solvation = 31.328719 kcal Electronic energy + Delta-G solvation = -27427.718730 eV Core-core repulsion = 23604.857491 eV Total energy + Delta-G solvation = -3822.861239 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.64196 -40.96021 -39.80683 -38.12028 -37.62205 -35.70728 -34.28454 -31.70017 -30.40279 -30.20240 -29.78259 -28.39953 -26.78291 -25.76752 -24.21521 -23.71581 -22.72065 -21.83651 -20.70667 -20.53935 -18.75389 -18.36559 -18.25582 -17.82387 -17.48794 -16.89537 -16.73600 -16.51928 -16.34634 -15.79463 -15.51782 -15.24595 -15.18164 -14.93037 -14.86636 -14.74122 -14.48037 -14.32161 -14.17860 -14.08337 -13.63300 -13.57426 -13.52344 -13.37414 -12.86650 -12.76059 -12.65273 -12.52325 -12.04725 -11.97342 -11.87675 -11.80769 -11.42376 -11.24009 -10.83777 -10.64151 -10.29011 -10.17595 -9.26506 -8.76230 -8.74119 -4.95602 0.03631 0.56005 0.73306 1.24303 1.33771 1.34392 1.57672 1.60514 1.70320 1.98445 2.08777 2.87160 3.30391 3.37228 3.45963 3.50735 3.56345 3.64477 3.68790 3.73540 3.81284 3.97632 3.99835 4.09229 4.17353 4.22346 4.26732 4.27224 4.28203 4.34375 4.51157 4.53400 4.61158 4.67418 4.69384 4.70587 4.75347 4.82329 4.83322 4.90549 4.96966 5.06694 5.19386 5.37681 5.43629 5.57971 5.64816 5.65623 6.04140 6.14753 6.36763 6.99312 7.03696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.323 6.323 3 C -0.072 4.072 4 H 0.120 0.880 5 C -0.106 4.106 6 C -0.101 4.101 7 H 0.127 0.873 8 C 0.134 3.866 9 N -0.706 5.706 10 C 0.488 3.512 11 O -0.575 6.575 12 C 0.087 3.913 13 N -0.468 5.468 14 C 0.053 3.947 15 C -0.181 4.181 16 C -0.052 4.052 17 O -0.571 6.571 18 Si 0.789 3.211 19 C -0.120 4.120 20 C -0.082 4.082 21 C -0.151 4.151 22 C -0.103 4.103 23 C -0.136 4.136 24 C 0.089 3.911 25 C -0.117 4.117 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.422 0.578 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.175 0.825 37 H 0.080 0.920 38 H 0.398 0.602 39 H -0.281 1.281 40 H -0.294 1.294 41 H 0.128 0.872 42 H 0.144 0.856 43 H 0.150 0.850 44 H 0.134 0.866 45 H 0.093 0.907 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 6.762 1.761 8.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.095 6.095 3 C -0.200 4.200 4 H 0.139 0.861 5 C -0.146 4.146 6 C -0.121 4.121 7 H 0.145 0.855 8 C 0.010 3.990 9 N -0.360 5.360 10 C 0.273 3.727 11 O -0.454 6.454 12 C -0.037 4.037 13 N -0.151 5.151 14 C -0.072 4.072 15 C -0.189 4.189 16 C -0.161 4.161 17 O -0.381 6.381 18 Si 0.693 3.307 19 C -0.124 4.124 20 C -0.101 4.101 21 C -0.170 4.170 22 C -0.122 4.122 23 C -0.157 4.157 24 C -0.016 4.016 25 C -0.157 4.157 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.260 0.740 34 H 0.175 0.825 35 H 0.167 0.833 36 H 0.192 0.808 37 H 0.098 0.902 38 H 0.249 0.751 39 H -0.208 1.208 40 H -0.222 1.222 41 H 0.146 0.854 42 H 0.162 0.838 43 H 0.168 0.832 44 H 0.151 0.849 45 H 0.111 0.889 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.062 5.385 2.685 7.863 hybrid contribution -1.338 0.270 0.035 1.366 sum -6.400 5.654 2.720 8.963 Atomic orbital electron populations 1.23368 0.91501 1.07052 1.05796 1.87285 1.10664 1.13756 1.97792 1.24741 1.01050 0.92078 1.02134 0.86143 1.22796 0.93235 0.97915 1.00633 1.22677 0.94330 0.99673 0.95455 0.85462 1.21285 0.98529 0.87840 0.91377 1.45764 1.27587 1.30203 1.32456 1.21441 0.82712 0.86917 0.81623 1.90817 1.31036 1.52450 1.71077 1.21993 0.91606 0.99050 0.91074 1.43391 1.18545 1.38367 1.14772 1.21725 0.87928 0.98489 0.99100 1.20063 0.97908 1.04901 0.95985 1.24353 0.84371 0.98961 1.08438 1.86516 1.18024 1.39639 1.93885 0.94125 0.87217 0.74710 0.74631 1.19368 0.95260 1.01163 0.96588 1.20501 0.99751 0.96727 0.93086 1.20984 0.94989 0.99510 1.01524 1.21196 0.97453 0.99439 0.94072 1.20266 0.99894 0.98833 0.96691 1.18493 0.97572 0.98356 0.87179 1.23346 0.98780 0.98847 0.94693 0.89525 0.89522 0.87979 0.90356 0.89043 0.92941 0.92507 0.74004 0.82521 0.83292 0.80766 0.90241 0.75131 1.20792 1.22185 0.85384 0.83816 0.83220 0.84857 0.88862 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.32 10.76 113.37 1.22 1.54 16 2 S -0.32 -0.83 22.18 -56.49 -1.25 -2.08 16 3 C -0.07 0.27 4.27 31.12 0.13 0.40 16 4 H 0.12 -0.76 8.14 -2.39 -0.02 -0.78 16 5 C -0.11 0.39 7.23 31.12 0.22 0.62 16 6 C -0.10 0.74 3.75 -10.27 -0.04 0.70 16 7 H 0.13 -1.50 8.14 -2.39 -0.02 -1.52 16 8 C 0.13 -0.22 5.51 86.38 0.48 0.25 16 9 N -0.71 3.28 5.56 -463.05 -2.57 0.71 16 10 C 0.49 1.44 7.90 87.66 0.69 2.14 16 11 O -0.58 -9.19 16.42 -3.01 -0.05 -9.24 16 12 C 0.09 -0.25 6.48 85.63 0.55 0.31 16 13 N -0.47 -3.40 2.27 -519.98 -1.18 -4.58 16 14 C 0.05 0.48 9.89 83.00 0.82 1.30 16 15 C -0.18 -2.06 5.61 -18.63 -0.10 -2.16 16 16 C -0.05 -0.26 3.05 71.23 0.22 -0.04 16 17 O -0.57 -3.68 12.86 -148.98 -1.92 -5.59 16 18 Si 0.79 -0.31 30.80 68.60 2.11 1.80 16 19 C -0.12 -1.61 6.35 -20.20 -0.13 -1.74 16 20 C -0.08 -0.87 10.05 22.23 0.22 -0.65 16 21 C -0.15 -1.08 9.97 22.03 0.22 -0.86 16 22 C -0.10 -0.62 10.01 22.29 0.22 -0.40 16 23 C -0.14 -1.04 10.00 22.37 0.22 -0.82 16 24 C 0.09 1.00 6.80 39.03 0.27 1.26 16 25 C -0.12 0.72 7.22 31.12 0.22 0.94 16 26 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.08 0.02 8.06 -2.39 -0.02 0.00 16 30 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.05 0.16 7.84 -2.39 -0.02 0.14 16 32 H 0.06 0.11 8.14 -2.39 -0.02 0.10 16 33 H 0.42 -5.43 8.47 -92.71 -0.79 -6.21 16 34 H 0.16 -1.64 8.12 -2.39 -0.02 -1.66 16 35 H 0.15 -1.35 8.14 -2.39 -0.02 -1.37 16 36 H 0.18 0.82 6.30 -2.91 -0.02 0.80 16 37 H 0.08 0.14 7.96 -2.39 -0.02 0.12 16 38 H 0.40 -2.09 8.74 -74.06 -0.65 -2.74 16 39 H -0.28 -1.00 7.11 99.48 0.71 -0.29 16 40 H -0.29 -1.78 7.04 99.48 0.70 -1.08 16 41 H 0.13 1.00 8.06 -2.91 -0.02 0.97 16 42 H 0.14 0.28 8.06 -2.91 -0.02 0.26 16 43 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 44 H 0.13 0.34 8.06 -2.91 -0.02 0.32 16 45 H 0.09 -0.89 8.14 -2.38 -0.02 -0.91 16 46 H 0.08 -0.17 7.86 -2.39 -0.02 -0.19 16 Total: 0.00 -32.11 397.96 0.18 -31.93 By element: Atomic # 1 Polarization: -15.35 SS G_CDS: -0.41 Total: -15.76 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.45 Total: 2.80 kcal Atomic # 7 Polarization: -0.12 SS G_CDS: -3.75 Total: -3.87 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.96 Total: -14.83 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: 2.11 Total: 1.80 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -1.25 Total: -2.08 kcal Total: -32.11 0.18 -31.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18360570_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.257 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds