Wall clock time and date at job start Tue Mar 9 2021 13:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35452 * 125.56061 * 2 1 4 4 C 1.50702 * 126.07183 * 359.95867 * 3 2 1 5 5 O 1.42892 * 109.47316 * 114.77197 * 4 3 2 6 6 Si 1.86295 * 109.47373 * 234.77840 * 4 3 2 7 7 H 1.48503 * 109.47136 * 53.91610 * 6 4 3 8 8 H 1.48502 * 109.47257 * 173.92127 * 6 4 3 9 9 H 1.48499 * 109.46808 * 293.92201 * 6 4 3 10 10 C 1.39836 * 107.86255 * 180.12589 * 3 2 1 11 11 C 1.50697 * 126.45548 * 179.83200 * 10 3 2 12 12 C 1.37866 * 107.08450 * 359.57012 * 10 3 2 13 13 C 1.46679 * 126.23393 * 180.24163 * 12 10 3 14 14 O 1.21696 * 119.99768 * 359.97438 * 13 12 10 15 15 N 1.34776 * 120.00527 * 180.02562 * 13 12 10 16 16 C 1.47066 * 136.05056 * 359.62095 * 15 13 12 17 17 C 1.53765 * 87.88592 * 152.96681 * 16 15 13 18 18 O 1.42894 * 114.08447 * 139.77678 * 17 16 15 19 19 Si 1.63098 * 113.99710 * 116.56909 * 18 17 16 20 20 C 1.86306 * 109.46913 * 299.99531 * 19 18 17 21 21 C 1.86294 * 109.47440 * 59.99594 * 19 18 17 22 22 C 1.86301 * 109.47228 * 180.02562 * 19 18 17 23 23 C 1.52995 * 109.47263 * 59.99444 * 22 19 18 24 24 C 1.53003 * 109.47342 * 179.97438 * 22 19 18 25 25 C 1.53005 * 109.46949 * 299.99890 * 22 19 18 26 26 C 1.47061 * 136.06161 * 180.02562 * 15 13 12 27 27 N 1.35526 * 125.56600 * 179.64269 * 2 1 3 28 28 H 1.08998 * 109.47093 * 275.63155 * 1 2 3 29 29 H 1.08995 * 109.47090 * 35.63897 * 1 2 3 30 30 H 1.09002 * 109.46390 * 155.63615 * 1 2 3 31 31 H 1.09004 * 109.46772 * 354.77496 * 4 3 2 32 32 H 0.96702 * 113.99994 * 60.00614 * 5 4 3 33 33 H 1.08994 * 109.47505 * 269.71201 * 11 10 3 34 34 H 1.09001 * 109.47152 * 149.71109 * 11 10 3 35 35 H 1.09006 * 109.47400 * 29.71810 * 11 10 3 36 36 H 1.08997 * 113.47079 * 267.69990 * 16 15 13 37 37 H 1.08999 * 113.46821 * 38.14661 * 16 15 13 38 38 H 1.08992 * 114.39426 * 272.67911 * 17 16 15 39 39 H 1.08995 * 109.46551 * 60.00628 * 20 19 18 40 40 H 1.09006 * 109.46893 * 180.02562 * 20 19 18 41 41 H 1.08994 * 109.47108 * 300.00117 * 20 19 18 42 42 H 1.09008 * 109.47201 * 60.00345 * 21 19 18 43 43 H 1.09006 * 109.47351 * 179.97438 * 21 19 18 44 44 H 1.08995 * 109.47710 * 300.00404 * 21 19 18 45 45 H 1.09007 * 109.47190 * 60.00639 * 23 22 19 46 46 H 1.09003 * 109.47505 * 179.97438 * 23 22 19 47 47 H 1.08998 * 109.47478 * 300.00184 * 23 22 19 48 48 H 1.09006 * 109.46738 * 59.99936 * 24 22 19 49 49 H 1.09002 * 109.47383 * 179.97438 * 24 22 19 50 50 H 1.08997 * 109.47021 * 300.00193 * 24 22 19 51 51 H 1.08994 * 109.47393 * 59.99662 * 25 22 19 52 52 H 1.09002 * 109.47297 * 180.02562 * 25 22 19 53 53 H 1.09005 * 109.46690 * 299.99484 * 25 22 19 54 54 H 1.08996 * 113.46836 * 321.86002 * 26 15 13 55 55 H 1.09001 * 113.46962 * 92.29961 * 26 15 13 56 56 H 0.97007 * 125.68231 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8199 2.5321 -0.0009 5 8 2.2048 3.1626 1.2223 6 14 2.5864 3.4402 -1.4356 7 1 2.3088 2.7019 -2.6939 8 1 2.0073 4.8047 -1.5242 9 1 4.0542 3.5375 -1.2325 10 6 3.6270 0.6768 -0.0029 11 6 4.8485 1.5593 -0.0075 12 6 3.6122 -0.7018 0.0052 13 6 4.7860 -1.5813 0.0106 14 8 5.9049 -1.1028 0.0075 15 7 4.6255 -2.9195 0.0180 16 6 3.4860 -3.8491 0.0294 17 6 4.3909 -4.8771 -0.6697 18 8 4.2300 -6.2148 -0.1934 19 14 3.6720 -7.2565 -1.3175 20 6 2.0052 -6.6839 -1.9217 21 6 4.8624 -7.3219 -2.7490 22 6 3.5099 -8.9533 -0.5657 23 6 2.5319 -8.8991 0.6096 24 6 2.9858 -9.9304 -1.6200 25 6 4.8784 -9.4239 -0.0690 26 6 5.5125 -4.0924 0.0253 27 7 2.2953 -1.1024 0.0069 28 1 -0.3633 0.1008 1.0227 29 1 -0.3633 0.8351 -0.5988 30 1 -0.3632 -0.9362 -0.4240 31 1 0.7342 2.5544 -0.0951 32 1 3.1599 3.1793 1.3726 33 1 5.1433 1.7664 -1.0362 34 1 5.6641 1.0536 0.5094 35 1 4.6217 2.4964 0.5011 36 1 3.1811 -4.1499 1.0317 37 1 2.6488 -3.5172 -0.5846 38 1 4.4004 -4.8026 -1.7570 39 1 2.0997 -5.6911 -2.3615 40 1 1.6320 -7.3803 -2.6726 41 1 1.3087 -6.6456 -1.0842 42 1 5.8377 -7.6570 -2.3955 43 1 4.4897 -8.0185 -3.5001 44 1 4.9569 -6.3291 -3.1888 45 1 1.5568 -8.5639 0.2558 46 1 2.4367 -9.8919 1.0493 47 1 2.9048 -8.2029 1.3609 48 1 3.6823 -9.9691 -2.4576 49 1 2.8914 -10.9233 -1.1803 50 1 2.0108 -9.5949 -1.9735 51 1 5.2514 -8.7277 0.6822 52 1 4.7837 -10.4169 0.3705 53 1 5.5752 -9.4626 -0.9064 54 1 6.4021 -3.9678 -0.5921 55 1 5.7415 -4.4573 1.0266 56 1 1.9835 -2.0210 0.0123 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_12297754.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:47 Heat of formation + Delta-G solvation = -79.812019 kcal Electronic energy + Delta-G solvation = -32694.205702 eV Core-core repulsion = 28535.850821 eV Total energy + Delta-G solvation = -4158.354881 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.209 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.77918 -41.32911 -39.22995 -37.76133 -36.82284 -36.60301 -33.87982 -33.08595 -30.44642 -29.34229 -29.30936 -29.05952 -27.83349 -27.50014 -27.27251 -27.20192 -25.99602 -23.26970 -21.41907 -20.81090 -20.38378 -20.11248 -18.94290 -18.41332 -17.90029 -17.30856 -16.78621 -16.67137 -15.99928 -15.88856 -15.65976 -15.57308 -15.16799 -14.95618 -14.80552 -14.73648 -14.57401 -14.50431 -14.15082 -14.03249 -13.96397 -13.90882 -13.61389 -13.55771 -13.43207 -13.38016 -13.21109 -13.17955 -13.09038 -12.93884 -12.91977 -12.86605 -12.67312 -12.37996 -12.37088 -12.09322 -11.80940 -11.69275 -11.64326 -11.49285 -11.35101 -11.07051 -10.54003 -10.34993 -10.08213 -10.02390 -9.58935 -9.01401 0.28500 1.15179 1.18593 1.44667 1.52143 1.67938 1.74158 1.75875 1.99626 2.03675 2.08993 2.19982 2.45045 3.10162 3.33419 3.67916 3.72674 3.80906 3.90805 3.96038 4.04614 4.13346 4.14087 4.18829 4.29553 4.42852 4.43506 4.47024 4.50335 4.54422 4.59107 4.62896 4.72957 4.73614 4.77701 4.79372 4.81403 4.82563 4.83691 4.85907 4.99637 5.02412 5.07842 5.11265 5.12137 5.13299 5.22253 5.25357 5.36085 5.42739 5.43497 5.49370 5.60583 5.66830 5.67231 5.84971 6.37255 6.45718 6.72415 6.90225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.093 3.907 3 C -0.227 4.227 4 C -0.034 4.034 5 O -0.553 6.553 6 Si 0.959 3.041 7 H -0.269 1.269 8 H -0.270 1.270 9 H -0.245 1.245 10 C -0.078 4.078 11 C -0.100 4.100 12 C -0.073 4.073 13 C 0.618 3.382 14 O -0.564 6.564 15 N -0.652 5.652 16 C 0.071 3.929 17 C 0.088 3.912 18 O -0.610 6.610 19 Si 1.322 2.678 20 C -0.515 4.515 21 C -0.525 4.525 22 C -0.384 4.384 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.139 4.139 26 C 0.094 3.906 27 N -0.525 5.525 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.130 0.870 32 H 0.380 0.620 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.066 0.934 51 H 0.058 0.942 52 H 0.045 0.955 53 H 0.058 0.942 54 H 0.083 0.917 55 H 0.103 0.897 56 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.304 -4.295 -1.828 7.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.027 4.027 3 C -0.233 4.233 4 C -0.146 4.146 5 O -0.360 6.360 6 Si 0.783 3.217 7 H -0.193 1.193 8 H -0.195 1.195 9 H -0.169 1.169 10 C -0.087 4.087 11 C -0.157 4.157 12 C -0.185 4.185 13 C 0.411 3.589 14 O -0.443 6.443 15 N -0.389 5.389 16 C -0.052 4.052 17 C 0.030 3.970 18 O -0.568 6.568 19 Si 1.452 2.548 20 C -0.618 4.618 21 C -0.626 4.626 22 C -0.426 4.426 23 C -0.195 4.195 24 C -0.199 4.199 25 C -0.196 4.196 26 C -0.028 4.028 27 N -0.126 5.126 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.147 0.853 32 H 0.229 0.771 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.138 0.862 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.085 0.915 51 H 0.077 0.923 52 H 0.064 0.936 53 H 0.077 0.923 54 H 0.101 0.899 55 H 0.121 0.879 56 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -5.839 -3.509 -2.190 7.156 hybrid contribution 0.582 -1.277 -0.035 1.404 sum -5.256 -4.786 -2.226 7.449 Atomic orbital electron populations 1.20683 0.84692 1.05402 1.04734 1.20850 0.95086 0.84952 1.01832 1.19616 0.91988 0.96193 1.15538 1.24213 1.05218 0.90046 0.95126 1.86478 1.29377 1.79938 1.40222 0.85705 0.80979 0.78329 0.76682 1.19331 1.19490 1.16854 1.19945 0.95355 0.91536 1.01876 1.20603 0.94536 0.98122 1.02401 1.19758 0.83413 0.93462 1.21847 1.16616 0.87319 0.79310 0.75699 1.90822 1.25972 1.74399 1.53122 1.49136 1.13331 1.03009 1.73380 1.24006 0.91136 0.86229 1.03786 1.23285 0.95538 0.80164 0.98032 1.85428 1.85867 1.23978 1.61483 0.76152 0.63185 0.59473 0.55992 1.27072 1.20695 1.06675 1.07326 1.27217 1.13188 1.04765 1.17430 1.25969 0.97926 1.16970 1.01753 1.21556 0.98815 1.01717 0.97376 1.21615 1.01360 0.98874 0.98088 1.21565 0.95833 1.01078 1.01164 1.23445 0.95630 0.80826 1.02901 1.42107 1.04373 1.09329 1.56757 0.89115 0.88254 0.89205 0.85258 0.77064 0.91391 0.91314 0.90215 0.86501 0.88287 0.86183 0.90698 0.90404 0.90245 0.91261 0.90417 0.91159 0.91678 0.93684 0.92155 0.92054 0.93330 0.91528 0.92253 0.93560 0.92322 0.89868 0.87872 0.73068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.83 9.97 71.24 0.71 1.54 16 2 C 0.09 -0.13 7.13 41.35 0.29 0.17 16 3 C -0.23 -0.57 4.66 -20.12 -0.09 -0.66 16 4 C -0.03 -0.02 2.86 71.24 0.20 0.19 16 5 O -0.55 -1.58 12.88 -148.98 -1.92 -3.50 16 6 Si 0.96 1.75 26.06 68.60 1.79 3.53 16 7 H -0.27 -1.10 7.11 99.48 0.71 -0.39 16 8 H -0.27 -1.08 7.11 99.48 0.71 -0.38 16 9 H -0.25 -0.60 5.40 99.48 0.54 -0.06 16 10 C -0.08 -0.49 5.83 -19.57 -0.11 -0.60 16 11 C -0.10 -0.61 7.72 71.23 0.55 -0.06 16 12 C -0.07 -0.40 7.02 40.35 0.28 -0.12 16 13 C 0.62 5.21 8.04 86.45 0.69 5.90 16 14 O -0.56 -9.03 15.58 -4.33 -0.07 -9.10 16 15 N -0.65 -0.85 3.69 -863.05 -3.18 -4.03 16 16 C 0.07 -0.49 7.18 83.27 0.60 0.11 16 17 C 0.09 -0.54 3.93 31.03 0.12 -0.41 16 18 O -0.61 3.42 8.61 -148.98 -1.28 2.14 16 19 Si 1.32 -9.41 8.24 68.60 0.57 -8.85 16 20 C -0.52 4.14 8.65 113.37 0.98 5.12 16 21 C -0.52 2.54 8.64 113.37 0.98 3.52 16 22 C -0.38 1.53 0.53 -10.79 -0.01 1.53 16 23 C -0.14 0.49 7.84 71.98 0.56 1.05 16 24 C -0.14 0.57 7.85 71.98 0.56 1.13 16 25 C -0.14 0.29 7.85 71.98 0.56 0.85 16 26 C 0.09 -0.12 8.45 83.19 0.70 0.58 16 27 N -0.53 0.79 5.91 -171.94 -1.02 -0.23 16 28 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H 0.10 -1.00 7.27 -2.39 -0.02 -1.02 16 30 H 0.09 -1.09 8.14 -2.39 -0.02 -1.11 16 31 H 0.13 -0.46 6.66 -2.39 -0.02 -0.48 16 32 H 0.38 -0.47 6.61 -74.06 -0.49 -0.95 16 33 H 0.07 0.44 7.38 -2.39 -0.02 0.43 16 34 H 0.07 0.69 6.48 -2.39 -0.02 0.67 16 35 H 0.08 0.10 4.97 -2.38 -0.01 0.09 16 36 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 37 H 0.10 -1.16 6.39 -2.39 -0.02 -1.18 16 38 H 0.12 -1.10 6.50 -2.39 -0.02 -1.12 16 39 H 0.07 -0.70 7.96 -2.39 -0.02 -0.72 16 40 H 0.08 -0.59 7.79 -2.38 -0.02 -0.61 16 41 H 0.08 -0.68 7.79 -2.39 -0.02 -0.70 16 42 H 0.07 -0.24 7.79 -2.38 -0.02 -0.26 16 43 H 0.08 -0.39 7.79 -2.38 -0.02 -0.41 16 44 H 0.07 -0.39 7.31 -2.39 -0.02 -0.40 16 45 H 0.06 -0.37 7.79 -2.38 -0.02 -0.39 16 46 H 0.04 -0.07 8.14 -2.39 -0.02 -0.09 16 47 H 0.06 -0.22 7.97 -2.39 -0.02 -0.23 16 48 H 0.06 -0.30 7.79 -2.38 -0.02 -0.32 16 49 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 50 H 0.07 -0.40 7.79 -2.39 -0.02 -0.42 16 51 H 0.06 -0.11 7.96 -2.39 -0.02 -0.13 16 52 H 0.05 -0.03 8.14 -2.39 -0.02 -0.04 16 53 H 0.06 -0.17 7.80 -2.38 -0.02 -0.19 16 54 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 55 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 56 H 0.43 -3.26 5.86 -92.70 -0.54 -3.80 16 Total: 0.00 -19.58 431.51 2.92 -16.67 By element: Atomic # 1 Polarization: -16.90 SS G_CDS: 0.43 Total: -16.47 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 7.60 Total: 19.84 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -4.20 Total: -4.26 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -3.27 Total: -10.46 kcal Atomic # 14 Polarization: -7.67 SS G_CDS: 2.35 Total: -5.31 kcal Total: -19.58 2.92 -16.67 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_12297754.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.144 kcal (2) G-P(sol) polarization free energy of solvation -19.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds