Wall clock time and date at job start Tue Mar 9 2021 13:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47691 * 2 1 4 4 C 1.53002 * 109.47193 * 239.99703 * 2 1 3 5 5 Si 1.86300 * 109.47267 * 119.99920 * 2 1 3 6 6 C 1.86302 * 109.47068 * 300.00025 * 5 2 1 7 7 C 1.86296 * 109.47468 * 179.97438 * 5 2 1 8 8 O 1.63108 * 109.47056 * 59.99574 * 5 2 1 9 9 C 1.42903 * 113.99952 * 179.97438 * 8 5 2 10 10 C 1.53492 * 114.20245 * 150.00216 * 9 8 5 11 11 N 1.47061 * 87.98624 * 139.85733 * 10 9 8 12 12 C 1.34774 * 136.06487 * 152.84397 * 11 10 9 13 13 O 1.21289 * 119.99362 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00735 * 179.97438 * 12 11 10 15 15 C 1.50698 * 109.47556 * 179.97438 * 14 12 11 16 16 C 1.38228 * 120.00200 * 270.28677 * 15 14 12 17 17 C 1.38238 * 120.00120 * 180.23540 * 16 15 14 18 18 C 1.38234 * 119.99675 * 359.47825 * 17 16 15 19 19 C 1.50703 * 120.00257 * 180.27927 * 18 17 16 20 20 O 1.42908 * 109.46633 * 65.00233 * 19 18 17 21 21 Si 1.86297 * 109.47442 * 185.00250 * 19 18 17 22 22 H 1.48503 * 109.47012 * 60.00177 * 21 19 18 23 23 H 1.48496 * 109.47110 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47302 * 300.00318 * 21 19 18 25 25 C 1.38234 * 120.00240 * 0.26327 * 18 17 16 26 26 C 1.38234 * 119.99739 * 90.00042 * 15 14 12 27 27 C 1.47070 * 87.88241 * 333.09914 * 11 10 9 28 28 H 1.09003 * 109.46639 * 300.00106 * 1 2 3 29 29 H 1.09000 * 109.47144 * 60.00192 * 1 2 3 30 30 H 1.08997 * 109.47418 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47904 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47091 * 300.00137 * 3 2 1 33 33 H 1.09001 * 109.46963 * 59.99462 * 3 2 1 34 34 H 1.08997 * 109.47063 * 300.00370 * 4 2 1 35 35 H 1.09000 * 109.46990 * 60.00011 * 4 2 1 36 36 H 1.08997 * 109.47574 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47222 * 179.97438 * 6 5 2 38 38 H 1.08997 * 109.46927 * 299.99643 * 6 5 2 39 39 H 1.09000 * 109.47006 * 59.99564 * 6 5 2 40 40 H 1.09009 * 109.47098 * 300.00113 * 7 5 2 41 41 H 1.08997 * 109.47170 * 59.99964 * 7 5 2 42 42 H 1.09000 * 109.47345 * 179.97438 * 7 5 2 43 43 H 1.08997 * 113.27752 * 16.94011 * 9 8 5 44 44 H 1.09000 * 113.47049 * 25.07248 * 10 9 8 45 45 H 1.09005 * 113.52036 * 254.64610 * 10 9 8 46 46 H 1.09007 * 109.46721 * 60.00010 * 14 12 11 47 47 H 1.08998 * 109.47636 * 300.00501 * 14 12 11 48 48 H 1.08004 * 120.00256 * 359.97438 * 16 15 14 49 49 H 1.08002 * 120.00519 * 179.76445 * 17 16 15 50 50 H 1.09000 * 109.46946 * 305.01070 * 19 18 17 51 51 H 0.96696 * 113.99968 * 60.00187 * 20 19 18 52 52 H 1.07997 * 120.00460 * 180.02562 * 25 18 17 53 53 H 1.08001 * 120.00310 * 0.02562 * 26 15 14 54 54 H 1.08998 * 113.46587 * 141.68103 * 27 11 10 55 55 H 1.09000 * 113.46864 * 272.12099 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8789 1.5208 8 8 1.6073 -2.4160 1.5212 9 6 2.0294 -3.1817 2.6515 10 6 1.0420 -4.2788 3.0726 11 7 2.1986 -5.1537 3.3167 12 6 2.4684 -6.2059 4.1146 13 8 1.6172 -6.6300 4.8673 14 6 3.8271 -6.8561 4.0707 15 6 3.8690 -7.9993 5.0518 16 6 4.2671 -7.7762 6.3565 17 6 4.3102 -8.8258 7.2551 18 6 3.9446 -10.0964 6.8517 19 6 3.9854 -11.2395 7.8329 20 8 3.0250 -11.0142 8.8669 21 14 3.5856 -12.8305 6.9500 22 1 4.5836 -13.0646 5.8755 23 1 3.6252 -13.9567 7.9170 24 1 2.2287 -12.7382 6.3536 25 6 3.5413 -10.3185 5.5483 26 6 3.5034 -9.2699 4.6483 27 6 2.9336 -4.3711 2.3116 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7218 -1.2490 37 1 1.8930 -0.5140 3.9323 38 1 1.8934 1.0277 3.0423 39 1 0.4400 0.0001 3.0422 40 1 4.3770 -1.3931 0.6307 41 1 4.3777 0.1486 1.5206 42 1 4.3773 -1.3923 2.4110 43 1 2.3941 -2.5683 3.4754 44 1 0.4020 -4.6221 2.2598 45 1 0.4824 -4.0369 3.9762 46 1 4.5894 -6.1231 4.3349 47 1 4.0178 -7.2323 3.0656 48 1 4.5487 -6.7827 6.6728 49 1 4.6249 -8.6523 8.2736 50 1 4.9814 -11.3072 8.2707 51 1 2.1145 -10.9431 8.5492 52 1 3.2553 -11.3111 5.2332 53 1 3.1883 -9.4435 3.6300 54 1 3.9799 -4.2068 2.5695 55 1 2.8026 -4.7392 1.2940 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_12335836.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:28 Heat of formation + Delta-G solvation = -95.896972 kcal Electronic energy + Delta-G solvation = -30624.191210 eV Core-core repulsion = 26557.876223 eV Total energy + Delta-G solvation = -4066.314987 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.198 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.62557 -40.62682 -39.24919 -37.61857 -36.79641 -36.46364 -34.07762 -31.96595 -30.93801 -29.36742 -29.02594 -28.82573 -27.80742 -27.36510 -26.98821 -25.56538 -23.86644 -23.03395 -21.83812 -20.37160 -20.02365 -18.55771 -18.46483 -18.11700 -17.33432 -17.00496 -16.57312 -16.32913 -16.16820 -15.97767 -15.80158 -15.20636 -15.11764 -15.05934 -14.78049 -14.75786 -14.52048 -14.39941 -14.20554 -13.97130 -13.82399 -13.51156 -13.35541 -13.31629 -13.18598 -13.13281 -12.97462 -12.91456 -12.88156 -12.85417 -12.72430 -12.34751 -12.26782 -12.18304 -11.98552 -11.73458 -11.66026 -11.56410 -11.48541 -11.26087 -11.06220 -10.41490 -10.27727 -10.03059 -9.89363 -9.81678 -9.63973 0.20626 0.43141 1.16220 1.30976 1.43476 1.49988 1.52815 1.80550 1.88363 1.94117 2.14377 2.50170 2.71319 3.28029 3.50073 3.54242 3.66382 3.76566 3.86485 3.90241 4.02151 4.10804 4.15986 4.16500 4.30462 4.40997 4.43291 4.48831 4.52804 4.56354 4.61567 4.65556 4.68459 4.70299 4.76006 4.77833 4.81773 4.85118 4.86846 4.88076 4.90369 5.01426 5.04528 5.06767 5.13293 5.14150 5.25485 5.35510 5.38989 5.45708 5.48600 5.52022 5.55540 5.56671 5.63709 5.72097 6.00100 6.63094 6.64436 7.05136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.386 4.386 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.323 2.677 6 C -0.524 4.524 7 C -0.514 4.514 8 O -0.613 6.613 9 C 0.080 3.920 10 C 0.088 3.912 11 N -0.650 5.650 12 C 0.543 3.457 13 O -0.580 6.580 14 C -0.089 4.089 15 C -0.075 4.075 16 C -0.113 4.113 17 C -0.102 4.102 18 C -0.127 4.127 19 C -0.081 4.081 20 O -0.554 6.554 21 Si 0.984 3.016 22 H -0.253 1.253 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.137 4.137 26 C -0.112 4.112 27 C 0.083 3.917 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.132 0.868 47 H 0.129 0.871 48 H 0.136 0.864 49 H 0.132 0.868 50 H 0.126 0.874 51 H 0.387 0.613 52 H 0.128 0.872 53 H 0.136 0.864 54 H 0.114 0.886 55 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.585 3.685 -4.232 7.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.428 4.428 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.453 2.547 6 C -0.625 4.625 7 C -0.616 4.616 8 O -0.571 6.571 9 C 0.022 3.978 10 C -0.035 4.035 11 N -0.387 5.387 12 C 0.335 3.665 13 O -0.459 6.459 14 C -0.128 4.128 15 C -0.075 4.075 16 C -0.131 4.131 17 C -0.120 4.120 18 C -0.127 4.127 19 C -0.191 4.191 20 O -0.361 6.361 21 Si 0.808 3.192 22 H -0.177 1.177 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.155 4.155 26 C -0.130 4.130 27 C -0.040 4.040 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.135 0.865 44 H 0.115 0.885 45 H 0.092 0.908 46 H 0.150 0.850 47 H 0.147 0.853 48 H 0.154 0.846 49 H 0.150 0.850 50 H 0.144 0.856 51 H 0.236 0.764 52 H 0.145 0.855 53 H 0.154 0.846 54 H 0.132 0.868 55 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.345 2.310 -3.922 6.293 hybrid contribution -0.699 0.964 -0.085 1.194 sum 3.646 3.273 -4.007 6.330 Atomic orbital electron populations 1.21559 0.94566 1.01833 1.01633 1.25993 1.00174 1.03022 1.13592 1.21612 1.01447 0.94846 1.02006 1.21549 1.01250 1.00091 0.96533 0.76124 0.63074 0.52159 0.63353 1.27215 1.06847 1.10007 1.18463 1.27060 1.24146 1.05213 1.05210 1.85419 1.78501 1.46853 1.46320 1.23263 0.95202 0.91287 0.88028 1.23409 0.91448 0.87323 1.01345 1.49324 1.18366 1.31126 1.39924 1.20605 0.90291 0.77298 0.78325 1.90753 1.50648 1.63140 1.41343 1.20682 0.93846 0.96634 1.01675 1.19562 0.99007 0.94208 0.94756 1.21283 0.99343 0.99651 0.92800 1.21139 0.98746 0.92056 1.00035 1.20434 1.01055 0.96430 0.94777 1.25060 0.97169 1.03736 0.93141 1.86471 1.20281 1.95465 1.33876 0.85201 0.80731 0.75280 0.77960 1.17730 1.19899 1.18349 1.21184 1.00983 0.99665 0.93633 1.21176 0.98934 0.92393 1.00447 1.23771 0.99089 0.87403 0.93690 0.92358 0.93618 0.92307 0.91513 0.93413 0.92054 0.92162 0.93759 0.91669 0.91091 0.90477 0.91443 0.90378 0.90568 0.90455 0.86467 0.88513 0.90793 0.84999 0.85325 0.84591 0.85002 0.85636 0.76434 0.85452 0.84627 0.86751 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.21 7.85 71.98 0.56 0.78 16 2 C -0.39 1.34 0.53 -10.79 -0.01 1.33 16 3 C -0.14 0.50 7.85 71.98 0.56 1.07 16 4 C -0.14 0.41 7.85 71.98 0.56 0.97 16 5 Si 1.32 -8.89 8.24 68.60 0.57 -8.32 16 6 C -0.52 2.39 8.64 113.37 0.98 3.37 16 7 C -0.51 3.93 8.65 113.37 0.98 4.91 16 8 O -0.61 3.14 8.62 -148.98 -1.28 1.85 16 9 C 0.08 -0.50 3.89 30.84 0.12 -0.38 16 10 C 0.09 -0.11 8.46 83.17 0.70 0.59 16 11 N -0.65 0.63 3.69 -859.52 -3.17 -2.54 16 12 C 0.54 2.11 8.07 87.66 0.71 2.82 16 13 O -0.58 -8.30 16.81 -3.06 -0.05 -8.35 16 14 C -0.09 0.28 5.66 29.10 0.16 0.45 16 15 C -0.07 -0.19 4.37 -19.87 -0.09 -0.27 16 16 C -0.11 -0.34 9.70 22.27 0.22 -0.13 16 17 C -0.10 -0.42 9.69 22.27 0.22 -0.20 16 18 C -0.13 -0.49 5.35 -19.87 -0.11 -0.60 16 19 C -0.08 -0.13 2.80 71.24 0.20 0.07 16 20 O -0.55 -2.08 12.83 -148.98 -1.91 -3.99 16 21 Si 0.98 0.97 25.14 68.60 1.72 2.70 16 22 H -0.25 -0.33 7.11 99.48 0.71 0.37 16 23 H -0.27 -1.09 7.11 99.48 0.71 -0.38 16 24 H -0.26 -0.49 7.04 99.48 0.70 0.21 16 25 C -0.14 -0.52 8.67 22.27 0.19 -0.33 16 26 C -0.11 -0.37 9.70 22.27 0.22 -0.15 16 27 C 0.08 -0.68 8.26 83.08 0.69 0.01 16 28 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 29 H 0.04 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 -0.08 7.96 -2.39 -0.02 -0.10 16 31 H 0.07 -0.37 7.79 -2.39 -0.02 -0.39 16 32 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 33 H 0.06 -0.28 7.79 -2.39 -0.02 -0.30 16 34 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 35 H 0.04 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.06 -0.33 7.79 -2.39 -0.02 -0.35 16 37 H 0.07 -0.38 7.31 -2.39 -0.02 -0.40 16 38 H 0.08 -0.36 7.79 -2.39 -0.02 -0.38 16 39 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 40 H 0.08 -0.61 7.79 -2.38 -0.02 -0.63 16 41 H 0.08 -0.55 7.79 -2.39 -0.02 -0.56 16 42 H 0.08 -0.72 7.96 -2.39 -0.02 -0.74 16 43 H 0.12 -1.12 6.49 -2.39 -0.02 -1.13 16 44 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 46 H 0.13 -1.16 8.09 -2.38 -0.02 -1.18 16 47 H 0.13 -1.02 8.09 -2.39 -0.02 -1.04 16 48 H 0.14 -0.09 8.06 -2.91 -0.02 -0.12 16 49 H 0.13 0.30 8.06 -2.91 -0.02 0.28 16 50 H 0.13 -0.08 7.96 -2.39 -0.02 -0.10 16 51 H 0.39 -0.59 8.70 -74.06 -0.64 -1.24 16 52 H 0.13 0.16 4.87 -2.91 -0.01 0.14 16 53 H 0.14 -0.04 8.06 -2.91 -0.02 -0.07 16 54 H 0.11 -1.56 8.14 -2.39 -0.02 -1.57 16 55 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 Total: 0.00 -19.70 441.46 3.70 -16.00 By element: Atomic # 1 Polarization: -12.58 SS G_CDS: 0.95 Total: -11.63 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 6.88 Total: 14.29 kcal Atomic # 7 Polarization: 0.63 SS G_CDS: -3.17 Total: -2.54 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -3.25 Total: -10.49 kcal Atomic # 14 Polarization: -7.91 SS G_CDS: 2.29 Total: -5.62 kcal Total: -19.70 3.70 -16.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_12335836.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.899 kcal (2) G-P(sol) polarization free energy of solvation -19.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds