Wall clock time and date at job start Tue Mar 9 2021 13:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46571 * 2 1 4 4 C 1.52998 * 109.47492 * 239.99662 * 2 1 3 5 5 Si 1.86307 * 109.46896 * 119.99523 * 2 1 3 6 6 C 1.86302 * 109.47336 * 300.00421 * 5 2 1 7 7 C 1.86296 * 109.46907 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.46814 * 60.00531 * 5 2 1 9 9 C 1.42905 * 113.99678 * 179.97438 * 8 5 2 10 10 C 1.53494 * 114.20583 * 149.99996 * 9 8 5 11 11 N 1.47061 * 87.98740 * 139.85325 * 10 9 8 12 12 C 1.34780 * 136.05964 * 152.84588 * 11 10 9 13 13 O 1.21697 * 119.99622 * 359.97438 * 12 11 10 14 14 C 1.46423 * 119.99774 * 180.02562 * 12 11 10 15 15 C 1.34815 * 119.99661 * 179.97438 * 14 12 11 16 16 C 1.47207 * 120.00031 * 179.97438 * 15 14 12 17 17 C 1.39833 * 120.16914 * 179.97438 * 16 15 14 18 18 C 1.37891 * 119.82645 * 179.70073 * 17 16 15 19 19 C 1.38402 * 120.17107 * 0.27980 * 18 17 16 20 20 C 1.50697 * 119.83055 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47304 * 65.00213 * 20 19 18 22 22 Si 1.86307 * 109.47223 * 185.00123 * 20 19 18 23 23 H 1.48500 * 109.46947 * 60.00121 * 22 20 19 24 24 H 1.48500 * 109.47067 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47069 * 300.00146 * 22 20 19 26 26 C 1.38411 * 120.34376 * 359.97438 * 19 18 17 27 27 C 1.37884 * 120.16866 * 0.02562 * 26 19 18 28 28 C 1.47063 * 87.88252 * 333.10101 * 11 10 9 29 29 H 1.08996 * 109.47524 * 300.00005 * 1 2 3 30 30 H 1.09001 * 109.47383 * 60.00708 * 1 2 3 31 31 H 1.09011 * 109.46702 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46792 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47381 * 299.99429 * 3 2 1 34 34 H 1.09003 * 109.47449 * 60.00040 * 3 2 1 35 35 H 1.08999 * 109.47089 * 300.00164 * 4 2 1 36 36 H 1.08997 * 109.46752 * 59.99811 * 4 2 1 37 37 H 1.08993 * 109.47006 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.46925 * 180.02562 * 6 5 2 39 39 H 1.09004 * 109.47002 * 300.00366 * 6 5 2 40 40 H 1.09000 * 109.47017 * 59.99924 * 6 5 2 41 41 H 1.08996 * 109.47321 * 300.00354 * 7 5 2 42 42 H 1.08999 * 109.47279 * 60.00179 * 7 5 2 43 43 H 1.09001 * 109.47393 * 179.97438 * 7 5 2 44 44 H 1.08997 * 113.27959 * 16.93517 * 9 8 5 45 45 H 1.09001 * 113.46828 * 25.07044 * 10 9 8 46 46 H 1.09002 * 113.52344 * 254.64504 * 10 9 8 47 47 H 1.07996 * 120.00401 * 359.97438 * 14 12 11 48 48 H 1.07996 * 119.99938 * 359.97438 * 15 14 12 49 49 H 1.08002 * 120.09041 * 359.97438 * 17 16 15 50 50 H 1.07995 * 119.91963 * 180.30828 * 18 17 16 51 51 H 1.09003 * 109.47289 * 304.99843 * 20 19 18 52 52 H 0.96701 * 114.00093 * 180.02562 * 21 20 19 53 53 H 1.08002 * 119.91200 * 180.02562 * 26 19 18 54 54 H 1.08003 * 120.08786 * 179.97438 * 27 26 19 55 55 H 1.09007 * 113.46853 * 141.68071 * 28 11 10 56 56 H 1.09006 * 113.47089 * 272.11642 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1510 -0.8781 1.5213 6 6 1.5299 0.0001 3.0424 7 6 4.0139 -0.8775 1.5217 8 8 1.6074 -2.4159 1.5212 9 6 2.0295 -3.1815 2.6516 10 6 1.0422 -4.2788 3.0727 11 7 2.1988 -5.1536 3.3169 12 6 2.4685 -6.2057 4.1148 13 8 1.6147 -6.6307 4.8707 14 6 3.7892 -6.8367 4.0730 15 6 4.0591 -7.8888 4.8716 16 6 5.3866 -8.5235 4.8292 17 6 5.6706 -9.6147 5.6563 18 6 6.9144 -10.2077 5.6064 19 6 7.8825 -9.7221 4.7447 20 6 9.2391 -10.3765 4.6960 21 8 9.1063 -11.7124 4.2065 22 14 10.3555 -9.4078 3.5619 23 1 10.4936 -8.0194 4.0706 24 1 11.6925 -10.0523 3.5144 25 1 9.7705 -9.3790 2.1973 26 6 7.6108 -8.6392 3.9267 27 6 6.3718 -8.0354 3.9651 28 6 2.9338 -4.3710 2.3118 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6768 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7209 -1.2493 38 1 1.8935 -0.5134 3.9323 39 1 1.8931 1.0278 3.0423 40 1 0.4399 0.0001 3.0423 41 1 4.3777 -1.3910 0.6318 42 1 4.3769 0.1503 1.5219 43 1 4.3773 -1.3908 2.4119 44 1 2.3940 -2.5681 3.4756 45 1 0.4022 -4.6221 2.2599 46 1 0.4824 -4.0370 3.9762 47 1 4.5470 -6.4593 3.4025 48 1 3.3014 -8.2660 5.5424 49 1 4.9162 -9.9948 6.3293 50 1 7.1337 -11.0537 6.2409 51 1 9.6686 -10.3975 5.6976 52 1 9.9422 -12.1951 4.1488 53 1 8.3713 -8.2662 3.2566 54 1 6.1613 -7.1902 3.3265 55 1 3.9800 -4.2065 2.5698 56 1 2.8029 -4.7391 1.2942 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_12360594.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:34:05 Heat of formation + Delta-G solvation = -74.163564 kcal Electronic energy + Delta-G solvation = -31540.509320 eV Core-core repulsion = 27346.910623 eV Total energy + Delta-G solvation = -4193.598697 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.198 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.57978 -40.58576 -39.40647 -37.71910 -36.80085 -36.50339 -35.17947 -32.29397 -31.60931 -30.08299 -29.29149 -29.02559 -27.80959 -27.41573 -27.22747 -26.71332 -24.18388 -23.90961 -22.56813 -21.20060 -20.36014 -19.71985 -18.77344 -18.46433 -18.40165 -17.40751 -17.26165 -16.65185 -16.33063 -16.13592 -15.96416 -15.53788 -15.33360 -15.12605 -14.99648 -14.79207 -14.75152 -14.43510 -14.40003 -14.27065 -13.96137 -13.93499 -13.86032 -13.56519 -13.51282 -13.34429 -13.16310 -13.15107 -12.96888 -12.91550 -12.88042 -12.75074 -12.35039 -12.30608 -12.17603 -11.91427 -11.75237 -11.69548 -11.66345 -11.51075 -11.35676 -11.27911 -11.14058 -10.30469 -10.29044 -10.03700 -9.99848 -9.89327 -9.24983 -0.59371 0.37281 0.83447 1.16966 1.28588 1.46906 1.52274 1.79704 1.86250 1.91228 2.13051 2.17452 2.49718 2.76849 3.20444 3.35129 3.46467 3.68595 3.79884 3.87757 3.90998 4.01812 4.09610 4.15686 4.16215 4.17248 4.31837 4.34501 4.40059 4.46761 4.50993 4.56245 4.63105 4.64847 4.67289 4.77065 4.81282 4.81379 4.84997 4.86190 4.86883 4.88976 4.95555 5.04377 5.06907 5.13109 5.13892 5.17466 5.24978 5.38303 5.38739 5.45437 5.47216 5.47911 5.53932 5.56215 5.63381 5.70875 5.87944 6.56770 6.80644 6.98630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.385 4.385 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.321 2.679 6 C -0.524 4.524 7 C -0.514 4.514 8 O -0.613 6.613 9 C 0.082 3.918 10 C 0.088 3.912 11 N -0.645 5.645 12 C 0.573 3.427 13 O -0.592 6.592 14 C -0.207 4.207 15 C -0.013 4.013 16 C -0.084 4.084 17 C -0.099 4.099 18 C -0.103 4.103 19 C -0.076 4.076 20 C -0.087 4.087 21 O -0.563 6.563 22 Si 0.978 3.022 23 H -0.255 1.255 24 H -0.258 1.258 25 H -0.268 1.268 26 C -0.138 4.138 27 C -0.095 4.095 28 C 0.081 3.919 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.078 0.922 47 H 0.159 0.841 48 H 0.127 0.873 49 H 0.143 0.857 50 H 0.139 0.861 51 H 0.097 0.903 52 H 0.398 0.602 53 H 0.134 0.866 54 H 0.153 0.847 55 H 0.112 0.888 56 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.505 2.626 -1.408 7.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.427 4.427 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.451 2.549 6 C -0.625 4.625 7 C -0.617 4.617 8 O -0.570 6.570 9 C 0.024 3.976 10 C -0.034 4.034 11 N -0.380 5.380 12 C 0.368 3.632 13 O -0.475 6.475 14 C -0.228 4.228 15 C -0.033 4.033 16 C -0.085 4.085 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.076 4.076 20 C -0.197 4.197 21 O -0.372 6.372 22 Si 0.802 3.198 23 H -0.179 1.179 24 H -0.182 1.182 25 H -0.193 1.193 26 C -0.156 4.156 27 C -0.113 4.113 28 C -0.041 4.041 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.136 0.864 45 H 0.118 0.882 46 H 0.097 0.903 47 H 0.176 0.824 48 H 0.145 0.855 49 H 0.160 0.840 50 H 0.157 0.843 51 H 0.114 0.886 52 H 0.249 0.751 53 H 0.152 0.848 54 H 0.171 0.829 55 H 0.130 0.870 56 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.851 2.709 -1.630 6.651 hybrid contribution -0.015 0.012 0.324 0.324 sum 5.836 2.722 -1.306 6.571 Atomic orbital electron populations 1.21562 0.94497 1.01852 1.01683 1.25972 1.00224 1.03016 1.13459 1.21611 1.01426 0.94805 1.02050 1.21550 1.01226 1.00093 0.96578 0.76167 0.63049 0.52168 0.63531 1.27200 1.06913 1.10003 1.18352 1.27067 1.24247 1.05224 1.05145 1.85416 1.78458 1.46879 1.46249 1.23232 0.95048 0.91219 0.88063 1.23450 0.91287 0.87047 1.01640 1.49129 1.18626 1.30757 1.39523 1.18208 0.88581 0.77669 0.78780 1.90821 1.50675 1.63919 1.42041 1.22842 0.95697 0.99684 1.04537 1.22384 0.94213 0.92237 0.94447 1.19088 0.93323 0.97332 0.98709 1.21663 0.97388 0.94611 0.98006 1.21136 0.92614 0.99632 0.98726 1.19774 0.95753 0.95630 0.96453 1.24849 0.99489 0.89296 1.06054 1.86463 1.37876 1.24772 1.88111 0.85293 0.77120 0.78966 0.78435 1.17900 1.18204 1.19263 1.21163 0.98015 0.97046 0.99335 1.21574 0.92051 0.99893 0.97749 1.23803 0.99144 0.87527 0.93661 0.92287 0.93571 0.92319 0.91556 0.93349 0.92010 0.92200 0.93690 0.91719 0.91112 0.90417 0.91323 0.90421 0.90493 0.90568 0.86355 0.88206 0.90343 0.82407 0.85517 0.83959 0.84337 0.88568 0.75119 0.84830 0.82907 0.86969 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.16 7.85 71.98 0.56 0.72 16 2 C -0.38 1.12 0.53 -10.79 -0.01 1.11 16 3 C -0.14 0.44 7.85 71.98 0.56 1.01 16 4 C -0.14 0.32 7.85 71.98 0.56 0.89 16 5 Si 1.32 -7.76 8.24 68.60 0.57 -7.20 16 6 C -0.52 2.07 8.64 113.37 0.98 3.05 16 7 C -0.51 3.42 8.65 113.37 0.98 4.40 16 8 O -0.61 2.47 8.62 -148.98 -1.28 1.19 16 9 C 0.08 -0.39 3.89 30.84 0.12 -0.27 16 10 C 0.09 0.02 8.46 83.17 0.70 0.73 16 11 N -0.65 -1.29 3.69 -864.63 -3.19 -4.48 16 12 C 0.57 4.37 7.99 86.37 0.69 5.06 16 13 O -0.59 -9.94 17.01 -4.34 -0.07 -10.01 16 14 C -0.21 -0.34 9.25 23.62 0.22 -0.12 16 15 C -0.01 -0.04 9.46 23.84 0.23 0.19 16 16 C -0.08 -0.15 5.87 -20.15 -0.12 -0.27 16 17 C -0.10 -0.15 9.80 22.57 0.22 0.07 16 18 C -0.10 -0.17 9.66 22.23 0.21 0.05 16 19 C -0.08 -0.12 5.39 -19.78 -0.11 -0.22 16 20 C -0.09 0.20 2.79 71.24 0.20 0.40 16 21 O -0.56 0.50 12.81 -148.98 -1.91 -1.40 16 22 Si 0.98 -2.79 25.12 68.60 1.72 -1.07 16 23 H -0.26 0.51 7.11 99.48 0.71 1.22 16 24 H -0.26 0.71 7.11 99.48 0.71 1.41 16 25 H -0.27 -0.10 7.04 99.48 0.70 0.60 16 26 C -0.14 -0.09 8.65 22.23 0.19 0.10 16 27 C -0.10 0.03 9.41 22.57 0.21 0.24 16 28 C 0.08 -0.46 8.16 83.08 0.68 0.22 16 29 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 30 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 -0.05 7.97 -2.38 -0.02 -0.07 16 32 H 0.07 -0.33 7.79 -2.39 -0.02 -0.35 16 33 H 0.05 -0.07 8.14 -2.39 -0.02 -0.08 16 34 H 0.06 -0.26 7.79 -2.39 -0.02 -0.28 16 35 H 0.06 -0.14 7.97 -2.39 -0.02 -0.15 16 36 H 0.04 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.06 -0.28 7.79 -2.39 -0.02 -0.30 16 38 H 0.07 -0.33 7.31 -2.39 -0.02 -0.35 16 39 H 0.08 -0.33 7.79 -2.39 -0.02 -0.35 16 40 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 41 H 0.08 -0.53 7.79 -2.39 -0.02 -0.55 16 42 H 0.08 -0.49 7.79 -2.39 -0.02 -0.51 16 43 H 0.08 -0.61 7.96 -2.39 -0.02 -0.63 16 44 H 0.12 -0.95 6.49 -2.39 -0.02 -0.97 16 45 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.08 0.11 8.14 -2.39 -0.02 0.10 16 47 H 0.16 -0.80 5.98 -2.91 -0.02 -0.82 16 48 H 0.13 0.63 7.52 -2.91 -0.02 0.61 16 49 H 0.14 -0.21 8.06 -2.91 -0.02 -0.24 16 50 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 51 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 52 H 0.40 -3.91 8.74 -74.06 -0.65 -4.56 16 53 H 0.13 -0.30 4.84 -2.91 -0.01 -0.31 16 54 H 0.15 -0.90 6.17 -2.91 -0.02 -0.92 16 55 H 0.11 -1.21 8.14 -2.38 -0.02 -1.23 16 56 H 0.11 -0.79 8.14 -2.38 -0.02 -0.81 16 Total: 0.00 -20.23 451.22 3.88 -16.35 By element: Atomic # 1 Polarization: -11.66 SS G_CDS: 0.95 Total: -10.71 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 7.10 Total: 17.34 kcal Atomic # 7 Polarization: -1.29 SS G_CDS: -3.19 Total: -4.48 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -3.27 Total: -10.23 kcal Atomic # 14 Polarization: -10.56 SS G_CDS: 2.29 Total: -8.27 kcal Total: -20.23 3.88 -16.35 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_12360594.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.817 kcal (2) G-P(sol) polarization free energy of solvation -20.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds