Wall clock time and date at job start Tue Mar 9 2021 13:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47636 * 2 1 4 4 C 1.53002 * 109.46816 * 239.99861 * 2 1 3 5 5 Si 1.86301 * 109.47091 * 120.00461 * 2 1 3 6 6 C 1.86305 * 109.46766 * 299.99591 * 5 2 1 7 7 C 1.86302 * 109.47109 * 179.97438 * 5 2 1 8 8 O 1.63096 * 109.47080 * 59.99425 * 5 2 1 9 9 C 1.42902 * 113.99937 * 179.97438 * 8 5 2 10 10 C 1.53494 * 114.20677 * 209.99946 * 9 8 5 11 11 N 1.47072 * 87.98779 * 220.34639 * 10 9 8 12 12 C 1.34773 * 136.05808 * 207.08396 * 11 10 9 13 13 O 1.21568 * 120.00329 * 5.58711 * 12 11 10 14 14 C 1.47723 * 119.99729 * 185.58193 * 12 11 10 15 15 C 1.39633 * 120.12310 * 7.01493 * 14 12 11 16 16 C 1.37855 * 119.88373 * 180.29807 * 15 14 12 17 17 C 1.38634 * 120.11695 * 359.72030 * 16 15 14 18 18 F 1.35100 * 119.88267 * 180.02562 * 17 16 15 19 19 C 1.38677 * 120.23999 * 359.97438 * 17 16 15 20 20 C 1.50701 * 119.94234 * 180.02562 * 19 17 16 21 21 O 1.42894 * 109.47209 * 74.97719 * 20 19 17 22 22 Si 1.86307 * 109.46589 * 314.97574 * 20 19 17 23 23 H 1.48494 * 109.47147 * 60.00663 * 22 20 19 24 24 H 1.48502 * 109.46440 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47238 * 300.00092 * 22 20 19 26 26 C 1.37818 * 120.11787 * 0.02562 * 19 17 16 27 27 C 1.47069 * 87.88148 * 27.34520 * 11 10 9 28 28 H 1.08998 * 109.47013 * 300.00439 * 1 2 3 29 29 H 1.09009 * 109.46833 * 59.99201 * 1 2 3 30 30 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47464 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47068 * 300.00737 * 3 2 1 33 33 H 1.09004 * 109.46879 * 59.99870 * 3 2 1 34 34 H 1.08997 * 109.47472 * 300.00363 * 4 2 1 35 35 H 1.09005 * 109.47129 * 60.00832 * 4 2 1 36 36 H 1.08994 * 109.46971 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.46431 * 179.97438 * 6 5 2 38 38 H 1.08997 * 109.47340 * 299.99958 * 6 5 2 39 39 H 1.09002 * 109.46790 * 60.00285 * 6 5 2 40 40 H 1.08994 * 109.46627 * 299.99564 * 7 5 2 41 41 H 1.08997 * 109.47092 * 59.99984 * 7 5 2 42 42 H 1.09005 * 109.46610 * 179.97438 * 7 5 2 43 43 H 1.09001 * 113.41640 * 343.20409 * 9 8 5 44 44 H 1.09004 * 113.46778 * 105.56773 * 10 9 8 45 45 H 1.09000 * 113.52414 * 335.13367 * 10 9 8 46 46 H 1.08007 * 120.05832 * 0.02562 * 15 14 12 47 47 H 1.07994 * 119.94088 * 179.69957 * 16 15 14 48 48 H 1.09000 * 109.47142 * 194.98096 * 20 19 17 49 49 H 0.96702 * 113.99881 * 180.02562 * 21 20 19 50 50 H 1.07998 * 120.06354 * 180.02562 * 26 19 17 51 51 H 1.09004 * 113.47073 * 87.43853 * 27 11 10 52 52 H 1.09002 * 113.46636 * 217.88112 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1510 -0.8784 1.5211 6 6 1.5300 -0.0001 3.0422 7 6 4.0140 -0.8790 1.5207 8 8 1.6072 -2.4160 1.5210 9 6 2.0294 -3.1818 2.6512 10 6 2.1847 -4.6831 2.3718 11 7 1.5824 -4.9378 3.6891 12 6 1.6441 -5.9191 4.6109 13 8 2.4187 -6.8442 4.4631 14 6 0.7703 -5.8703 5.8011 15 6 -0.2205 -4.8917 5.9034 16 6 -1.0290 -4.8470 7.0190 17 6 -0.8636 -5.7748 8.0357 18 9 -1.6590 -5.7269 9.1267 19 6 0.1147 -6.7527 7.9364 20 6 0.2883 -7.7583 9.0453 21 8 -0.7688 -8.7181 8.9878 22 14 0.2440 -6.8833 10.6895 23 1 -1.0610 -6.1925 10.8476 24 1 0.4157 -7.8742 11.7822 25 1 1.3425 -5.8859 10.7492 26 6 0.9284 -6.8065 6.8254 27 6 0.8782 -3.6537 3.5548 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1299 -0.7217 -1.2491 37 1 1.8930 -0.5143 3.9322 38 1 1.8934 1.0275 3.0423 39 1 0.4400 -0.0001 3.0422 40 1 4.3769 -1.3931 0.6307 41 1 4.3777 0.1485 1.5205 42 1 4.3773 -1.3926 2.4109 43 1 2.8686 -2.7377 3.1864 44 1 3.2233 -5.0060 2.2995 45 1 1.5749 -5.0362 1.5401 46 1 -0.3503 -4.1685 5.1118 47 1 -1.7925 -4.0875 7.1013 48 1 1.2461 -8.2654 8.9293 49 1 -0.7210 -9.3975 9.6743 50 1 1.6897 -7.5687 6.7489 51 1 -0.0765 -3.7345 3.0350 52 1 0.8037 -3.0996 4.4905 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18362370_12496548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:38:09 Heat of formation + Delta-G solvation = -122.408702 kcal Electronic energy + Delta-G solvation = -31827.994847 eV Core-core repulsion = 27446.613868 eV Total energy + Delta-G solvation = -4381.380979 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.29363 -41.91971 -40.35328 -38.94885 -37.64472 -36.93917 -36.66433 -33.24957 -32.16449 -29.98827 -29.45816 -29.21415 -27.95846 -27.72044 -27.44632 -26.65371 -24.84511 -23.46154 -22.53758 -20.51606 -20.45217 -19.02442 -18.78973 -18.61492 -18.36169 -17.86868 -17.27856 -16.78014 -16.46130 -16.12874 -16.03866 -15.52709 -15.31395 -15.28995 -15.02622 -14.92929 -14.87676 -14.76558 -14.64395 -14.41663 -14.22559 -14.04826 -13.83836 -13.72537 -13.54882 -13.45207 -13.37788 -13.19820 -13.03224 -13.01896 -12.97395 -12.83611 -12.49146 -12.31000 -12.21883 -11.89403 -11.80342 -11.63836 -11.42927 -11.20410 -11.04895 -10.64280 -10.47900 -10.19153 -10.15451 -9.95223 -9.77008 -0.49662 -0.03977 1.06261 1.10208 1.41558 1.50301 1.58025 1.59310 1.74173 1.88846 1.94654 2.28067 2.52761 2.98375 3.01869 3.13154 3.26188 3.52528 3.56439 3.66772 3.83919 3.93449 4.01897 4.02627 4.04276 4.08161 4.13080 4.29262 4.35808 4.40807 4.48082 4.53880 4.55392 4.61025 4.61285 4.63186 4.66151 4.72726 4.75621 4.76931 4.83686 4.91196 4.97837 5.01807 5.02316 5.07699 5.09986 5.24846 5.28556 5.32487 5.40066 5.43251 5.49394 5.56849 6.48520 6.49748 7.00412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.135 4.135 5 Si 1.286 2.714 6 C -0.511 4.511 7 C -0.512 4.512 8 O -0.604 6.604 9 C 0.078 3.922 10 C 0.104 3.896 11 N -0.643 5.643 12 C 0.597 3.403 13 O -0.526 6.526 14 C -0.144 4.144 15 C -0.063 4.063 16 C -0.159 4.159 17 C 0.134 3.866 18 F -0.118 7.118 19 C -0.120 4.120 20 C -0.081 4.081 21 O -0.541 6.541 22 Si 0.932 3.068 23 H -0.225 1.225 24 H -0.255 1.255 25 H -0.251 1.251 26 C -0.009 4.009 27 C 0.070 3.930 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.082 0.918 49 H 0.383 0.617 50 H 0.150 0.850 51 H 0.106 0.894 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.027 4.123 -0.091 4.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.418 4.418 3 C -0.195 4.195 4 C -0.192 4.192 5 Si 1.418 2.582 6 C -0.613 4.613 7 C -0.614 4.614 8 O -0.561 6.561 9 C 0.020 3.980 10 C -0.018 4.018 11 N -0.380 5.380 12 C 0.388 3.612 13 O -0.402 6.402 14 C -0.147 4.147 15 C -0.082 4.082 16 C -0.178 4.178 17 C 0.115 3.885 18 F -0.096 7.096 19 C -0.121 4.121 20 C -0.190 4.190 21 O -0.348 6.348 22 Si 0.752 3.248 23 H -0.147 1.147 24 H -0.179 1.179 25 H -0.174 1.174 26 C -0.028 4.028 27 C -0.053 4.053 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.120 0.880 46 H 0.166 0.834 47 H 0.166 0.834 48 H 0.100 0.900 49 H 0.231 0.769 50 H 0.168 0.832 51 H 0.124 0.876 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.016 4.051 0.164 4.054 hybrid contribution 0.158 -0.050 0.230 0.283 sum 0.174 4.001 0.393 4.024 Atomic orbital electron populations 1.21521 0.93736 1.02019 1.01892 1.25789 1.00733 1.02671 1.12628 1.21561 1.00815 0.94861 1.02226 1.21523 1.00664 1.00252 0.96780 0.76783 0.63117 0.53107 0.65213 1.27059 1.07124 1.09664 1.17425 1.27059 1.24810 1.04922 1.04627 1.85435 1.78493 1.46299 1.45898 1.23352 0.96373 0.91993 0.86308 1.23301 1.00859 0.92245 0.85418 1.48986 1.48231 1.21123 1.19658 1.17521 0.82290 0.79914 0.81427 1.90836 1.38884 1.33298 1.77193 1.19812 0.99487 0.99275 0.96159 1.21694 0.92587 0.96552 0.97323 1.21149 1.02520 1.00489 0.93597 1.17923 0.89975 0.95933 0.84710 1.91596 1.71982 1.95702 1.50320 1.19259 0.98046 0.97117 0.97718 1.24634 0.93727 0.94324 1.06338 1.86516 1.48308 1.42208 1.57745 0.86203 0.82786 0.80769 0.75049 1.14699 1.17868 1.17414 1.21015 0.96715 0.95939 0.89142 1.23910 0.98424 0.82802 1.00136 0.92657 0.92749 0.92122 0.92489 0.92436 0.92482 0.92100 0.92735 0.92657 0.91436 0.90559 0.90690 0.90666 0.90561 0.91463 0.87741 0.89358 0.87978 0.83442 0.83437 0.89975 0.76879 0.83189 0.87599 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.21 7.85 37.16 0.29 0.51 16 2 C -0.37 0.70 0.53 -90.62 -0.05 0.65 16 3 C -0.14 0.25 7.85 37.16 0.29 0.55 16 4 C -0.14 0.17 7.85 37.16 0.29 0.47 16 5 Si 1.29 -3.95 8.24 -169.99 -1.40 -5.35 16 6 C -0.51 1.50 8.65 101.05 0.87 2.37 16 7 C -0.51 1.13 8.64 101.05 0.87 2.00 16 8 O -0.60 1.46 8.61 -35.23 -0.30 1.16 16 9 C 0.08 -0.22 3.92 -26.08 -0.10 -0.32 16 10 C 0.10 -0.12 8.45 -8.51 -0.07 -0.19 16 11 N -0.64 -0.03 3.67 -186.24 -0.68 -0.71 16 12 C 0.60 1.68 8.00 -12.39 -0.10 1.58 16 13 O -0.53 -3.38 17.14 5.31 0.09 -3.29 16 14 C -0.14 -0.20 5.87 -104.97 -0.62 -0.81 16 15 C -0.06 0.05 9.13 -39.20 -0.36 -0.31 16 16 C -0.16 0.07 10.01 -39.58 -0.40 -0.33 16 17 C 0.13 0.22 6.67 -39.27 -0.26 -0.04 16 18 F -0.12 -0.31 12.82 2.25 0.03 -0.28 16 19 C -0.12 -0.20 4.80 -104.61 -0.50 -0.70 16 20 C -0.08 -0.02 2.79 36.01 0.10 0.08 16 21 O -0.54 -0.46 12.86 -35.23 -0.45 -0.92 16 22 Si 0.93 0.24 26.09 -169.99 -4.43 -4.20 16 23 H -0.22 -0.40 5.29 56.52 0.30 -0.10 16 24 H -0.25 -0.05 7.11 56.52 0.40 0.35 16 25 H -0.25 -0.27 7.11 56.52 0.40 0.14 16 26 C -0.01 -0.02 9.20 -39.20 -0.36 -0.38 16 27 C 0.07 -0.22 5.96 -8.37 -0.05 -0.27 16 28 H 0.05 -0.12 7.79 -51.93 -0.40 -0.53 16 29 H 0.05 -0.05 8.14 -51.92 -0.42 -0.48 16 30 H 0.06 -0.10 7.97 -51.93 -0.41 -0.51 16 31 H 0.06 -0.13 7.79 -51.93 -0.40 -0.54 16 32 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.06 -0.14 7.79 -51.93 -0.40 -0.55 16 34 H 0.06 -0.08 7.96 -51.93 -0.41 -0.49 16 35 H 0.05 -0.04 8.14 -51.93 -0.42 -0.47 16 36 H 0.05 -0.09 7.79 -51.93 -0.40 -0.50 16 37 H 0.07 -0.23 7.96 -51.93 -0.41 -0.64 16 38 H 0.08 -0.21 7.79 -51.93 -0.40 -0.61 16 39 H 0.07 -0.22 7.79 -51.93 -0.40 -0.63 16 40 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 41 H 0.08 -0.17 7.79 -51.93 -0.40 -0.58 16 42 H 0.07 -0.16 7.31 -51.93 -0.38 -0.54 16 43 H 0.11 -0.43 6.50 -51.93 -0.34 -0.77 16 44 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 45 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 46 H 0.15 -0.50 4.20 -52.48 -0.22 -0.72 16 47 H 0.15 -0.40 8.06 -52.49 -0.42 -0.82 16 48 H 0.08 -0.15 7.77 -51.93 -0.40 -0.55 16 49 H 0.38 -1.39 8.74 45.56 0.40 -0.99 16 50 H 0.15 0.19 7.60 -52.49 -0.40 -0.21 16 51 H 0.11 -0.44 8.13 -51.93 -0.42 -0.86 16 52 H 0.09 -0.44 6.76 -51.93 -0.35 -0.79 16 LS Contribution 417.11 15.07 6.29 6.29 Total: 0.00 -7.91 417.11 -9.04 -16.96 By element: Atomic # 1 Polarization: -6.48 SS G_CDS: -8.03 Total: -14.51 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.14 Total: 4.85 kcal Atomic # 7 Polarization: -0.03 SS G_CDS: -0.68 Total: -0.71 kcal Atomic # 8 Polarization: -2.38 SS G_CDS: -0.67 Total: -3.05 kcal Atomic # 9 Polarization: -0.31 SS G_CDS: 0.03 Total: -0.28 kcal Atomic # 14 Polarization: -3.71 SS G_CDS: -5.84 Total: -9.54 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -7.91 -9.04 -16.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_12496548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.453 kcal (2) G-P(sol) polarization free energy of solvation -7.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds